3300028012: Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE4

Overview

Basic Information

• IMG/M Taxon OID: 3300028012
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128948 | Gp0306253 | Ga0265346
• Sample Name: Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE4
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27762496
• Sequencing Scaffolds: 22
• Novel Protein Genes: 28
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae	1
Not Available	7
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella → Nematostella vectensis	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Frigoriglobus → Frigoriglobus tundricola	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → unclassified Bacillus (in: Bacteria) → Bacillus sp. FJAT-21352	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → valley → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9992
  • Long. (^o): 10.7901
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F002981	Metagenome / Metatranscriptome	516	Y
F003931	Metagenome / Metatranscriptome	461	Y
F005599	Metagenome / Metatranscriptome	395	Y
F008834	Metagenome / Metatranscriptome	327	Y
F009084	Metagenome / Metatranscriptome	323	Y
F013200	Metagenome / Metatranscriptome	273	Y
F017942	Metagenome / Metatranscriptome	237	Y
F018297	Metagenome	235	Y
F018655	Metagenome / Metatranscriptome	233	Y
F022041	Metagenome / Metatranscriptome	216	Y
F028233	Metagenome / Metatranscriptome	192	Y
F034258	Metagenome / Metatranscriptome	175	Y
F035664	Metagenome / Metatranscriptome	171	Y
F036881	Metagenome / Metatranscriptome	169	Y
F040248	Metagenome / Metatranscriptome	162	Y
F045449	Metagenome / Metatranscriptome	153	Y
F046733	Metagenome / Metatranscriptome	151	Y
F061340	Metagenome / Metatranscriptome	132	Y
F061804	Metagenome / Metatranscriptome	131	Y
F097713	Metagenome / Metatranscriptome	104	Y
F103676	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0265346_100014	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae	6706
Ga0265346_100570	Not Available	1111
Ga0265346_100601	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella → Nematostella vectensis	1086
Ga0265346_100810	Not Available	960
Ga0265346_100839	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella → Nematostella vectensis	948
Ga0265346_100842	All Organisms → cellular organisms → Bacteria → Acidobacteria	948
Ga0265346_101077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	861
Ga0265346_101253	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	813
Ga0265346_101587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	752
Ga0265346_102034	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	690
Ga0265346_102049	Not Available	689
Ga0265346_102319	Not Available	663
Ga0265346_102825	Not Available	624
Ga0265346_102921	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Frigoriglobus → Frigoriglobus tundricola	617
Ga0265346_103388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	590
Ga0265346_103570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	581
Ga0265346_103905	All Organisms → cellular organisms → Bacteria → Proteobacteria	565
Ga0265346_104084	All Organisms → cellular organisms → Bacteria	556
Ga0265346_104265	Not Available	549
Ga0265346_104267	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549
Ga0265346_105062	Not Available	523
Ga0265346_105325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → unclassified Bacillus (in: Bacteria) → Bacillus sp. FJAT-21352	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265346_100014	Ga0265346_1000142	F061340	LKSFIEIKYIFKMNLTRKQITFLSHVPSDIKVDMTSGXRHHYFDGFSIGVISSFIESIGDDKIYLLIPLFSNAKSLQIATLNLSQPFLVDNKSNPDLIDEFIIDQXNSSGFNKKQDISFTFSFKFKRVXFSYI
Ga0265346_100570	Ga0265346_1005701	F009084	DGKTVTESFPTPAALRKAQREVDEFRRLQKLNDELLSINEKICDLRPVEQRSGWTEQEKKRLLQSIRRLRGK
Ga0265346_100601	Ga0265346_1006011	F018655	LYRVVDSIYIVVDYLYWVVDFLYRVLDFLYRVVDSLYRVMDSLYRVVDSLYRVVDSLYRVVNSLYRVVDSLYRVVNSLYIVVDYLYRVFDSLYRVVDSFYRVVDSF
Ga0265346_100601	Ga0265346_1006012	F017942	VVDSVYIVLNSFYRVVDSLFRVVDSQYRVVDSIYIVVDYLYRVVDSLYRVVDSLYRVVDSLYRVVDSLYRVVDYLYIVVDYLYRVFDSLYRIVDSLHRVVDSFYSLVDTLYRVMNSIYIVVDYLYRVVDSLHRVLDSLYIVMDGLPL
Ga0265346_100601	Ga0265346_1006013	F018655	VDSLYRAVNSVYKVVDSPYRVVDSIYRVVDSLYRIVDSLYRVVDSISMVVDYLYRVVNSLYRVVDSLHRVVDSFYREVDSLYKVVDSLYR
Ga0265346_100810	Ga0265346_1008101	F017942	YRVVDSLIRVVDSQYRVVDSIYMVVDYLYRVVDSLCSLMDSLYGVVDSLYRVVDSLYRVVDSLYRVMDSLYRVVDSLYIVVDYLYRVFDSLYRIVDSLHRVVDSLYRVVDSFYRVVNSIYIVVDYLYRVVDSLCRVLDSPLQGGGLPLQGHGIHLWGSGLPL
Ga0265346_100810	Ga0265346_1008102	F017942	VVDSIYIVLDSLFKVVDSQYRVVDSIYIVMDYLYRVVDSLYRVVDSLYRVVDSLYMVVDYLFRVFDSLYRVVDSHYRVVDSLYGVVDSVYRVVDSLYRVVDSLYRVVVSIYGVVDSLYRVVDSLYRVVDSLYMVV
Ga0265346_100839	Ga0265346_1008392	F017942	VVDSFYREVDSLYRVVDPLYRVVDSLYSAVDSFYIVVDYLYRVFDSLYIIVDSLHRVVDSLYRVVDSLHRVVNSIYIVVDYLYRVVDSLYRVVNSLYMVVDSLYRVVDSLYIVVDSLYRVVDSL
Ga0265346_100842	Ga0265346_1008423	F040248	GSSSEIQRTAVAKKPYEKPTFRYEKVFVTSALTCGKITSTQSGCGLNTRVS
Ga0265346_101077	Ga0265346_1010771	F097713	TVPTVSGAAFAVMPPARLTNYVFAHSRYSSGLDQRGVLADLLIESEEARPAVNEAAHVAP
Ga0265346_101244	Ga0265346_1012442	F018297	VVQQWFNSGSTQVQQWFNSGSTVVQQWFNSGSTVVQQRYNSSSTVVQQWFNSGSTVVQQWFNRGTTVEQQWYNSGSTVVNQWFNSGSTVVQKRYSIFTAVVHSGSTVVQQRNNSGLTVVQKWFNCGSTVVQQWFNSGSTVVQQRYNSGLRLVQQWYSNGTTVVQQWFNNGTTVVQQWFNSGSTLVQQWFNSGSTVVQQWFNNGSTVVRQRYNSGTAVV
Ga0265346_101253	Ga0265346_1012531	F036881	VEYDAVNKLFFVAQPNSSVSAQGSSIYIFDTNSNLKGTLNGFSFSNAFNVVPMHIALNPATKTGFVDGPSATVNEIESFSY
Ga0265346_101587	Ga0265346_1015871	F035664	AASGGIIVEIIGTNFTLALGSWRLRFVLAIEDSDEAPKGRVAPPHRLRVVPEDEFVR
Ga0265346_102034	Ga0265346_1020341	F022041	MKFANTRFATVSKSLFMGLALLMATSAFAGTKASLELHYPTNVNGTKLKPGEYKLQWEGSGPNVELSIMS
Ga0265346_102049	Ga0265346_1020491	F000247	VYTNIINAALSYKRTLYIEVARTNCLTSSLNIFIDKTLVPSFSALFTYLSIDRKLYYNSGLSLNKSIDLTSTNL
Ga0265346_102319	Ga0265346_1023191	F034258	MNDLYRQAVSLSFFAKGAAATVGVLIIHAAFRVLEKTLPRRFGRADARYKIRKLIVFSGYFSILLFLAFL
Ga0265346_102619	Ga0265346_1026192	F018297	VSGTTVVQQWFNSGSTVVQQWYNSGSTVQQWYNSGTTVVQQWFNSGSTVVQQWFNNGSTVVEQWFNRGSTEVQQWYISGSTVVQQWFNNGITVVQQWFNSGSTVVQQWFNSGSTVVQQWFNSGSTVVQLWF
Ga0265346_102825	Ga0265346_1028252	F008834	MIRSRLSYVRFHLKVLTLLLPACAYFIAIELRFGFNFFLSTHSPTGLPSYWHLALLTTIVWAIAAEEFGLWTEEQLYARAKKSRRLLEALAFTYMIVMAVAFLYRGASYSRLVIAVSAVSLFCIATIARIFFRVF
Ga0265346_102921	Ga0265346_1029212	F045449	AAAVAAGLWLLRSDLPRALRRRKGAVYPAVAQGGPKKY
Ga0265346_103388	Ga0265346_1033882	F005599	RAVTRVKPEQASKVEMRMPTRLQNGEGRTDGEAIDTCTRSIRRGSGHGTPEG
Ga0265346_103570	Ga0265346_1035701	F013200	AEYSGFRTAVGFEAKSYSYFMRTNIFPKIGKNLGLQTWNKDYYGLDTMFYEERGTDDFGKFASYVKWISVALEHAGKPTKTHEEINKLQMYNAPLKVLITYAAQGAESESLLRKYEAVMRDSDAFTDFATLRQQLVIFGTPRTVMDWQFYAYESDGFVLMLPG
Ga0265346_103905	Ga0265346_1039051	F061804	DMTVKANVALALLKLSAKMDQHSDSIDYDLTGVASIDLPFLRQLPFHQTGSFSLEGFQ
Ga0265346_104084	Ga0265346_1040841	F002981	TLDNVAAVDIPDQNSTMAALTFTVHNVSDKILYVHTLQGVLKQPSGDTSSADAVSAVDFDRYYQAFPSLKTGAQPALPPETTIQPGETVSRTIIVAFPVPLDKFNQRQSVGVTIWPYDETVPIVMTK
Ga0265346_104265	Ga0265346_1042651	F003931	EFFDGYDNKGNLFADGFTGDRSGFALVELPVGSTKFVTVKTSNAPEFPGSVQWDGTYLTVFDQYTASTYQYAVSGTTATLKNTIQFTGASDCAQTWIVKGLLYCGDAGTNGGEVFKYPDGGSPIATFTGNFDFPLGVTAAKK
Ga0265346_104267	Ga0265346_1042671	F028233	QVAALLNSTAPYMLVSVAPQLLGRASLESKNPQQAVTDFAPCLRYRGVTLQEGSGADTQAPDYPLCLLGTARAQAQFDKAAAIKSYQQLLDIWKNADADFIPAQEAKREFAALNAPAKN
Ga0265346_105062	Ga0265346_1050621	F046733	PLADQHEKAPARTVVFLVRLEVLRQLANALAQQRDLYFWTSGIRCVRTVLVNEGLFLLSG
Ga0265346_105325	Ga0265346_1053251	F017942	FYRVVESLFMVVDSQYRVVDSIYIVVDYLYRVVDSLCRVMDSLYRIVDSLYRVVDSLYRVVVSLYRVVDPLYRVVDSLYIVVDYLYRVFDSFYRIVDSLHRLVDSLYRVVDSLYRVVNSIYIVVYYLYRVVDSLCRVLDSLYIVLDGLPL
Ga0265346_105738	Ga0265346_1057381	F103676	MNSVVITTVVIPGFVSVLLFLVFTYLHEQSRLPYFRAWQLAWAAYCL