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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F103676 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 101 |
| Average Sequence Length | 47 residues |
| Representative Sequence | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYS |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 101 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 93 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.58 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (7.921 % of family members) |
| Environment Ontology (ENVO) | Unclassified (18.812 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.495 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 56.76% β-sheet: 0.00% Coil/Unstructured: 43.24% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.58 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 101 Family Scaffolds |
|---|---|---|
| PF00749 | tRNA-synt_1c | 83.17 |
| PF03966 | Trm112p | 2.97 |
| PF01979 | Amidohydro_1 | 0.99 |
| PF00578 | AhpC-TSA | 0.99 |
| PF07681 | DoxX | 0.99 |
| COG ID | Name | Functional Category | % Frequency in 101 Family Scaffolds |
|---|---|---|---|
| COG0008 | Glutamyl- or glutaminyl-tRNA synthetase | Translation, ribosomal structure and biogenesis [J] | 83.17 |
| COG2259 | Uncharacterized membrane protein YphA, DoxX/SURF4 family | Function unknown [S] | 0.99 |
| COG4270 | Uncharacterized membrane protein | Function unknown [S] | 0.99 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 7.92% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 6.93% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 6.93% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 5.94% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 4.95% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 4.95% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 4.95% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 4.95% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 3.96% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 3.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.97% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 2.97% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 2.97% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 2.97% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 2.97% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 1.98% |
| Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 1.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.98% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 1.98% |
| Watersheds | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds | 0.99% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 0.99% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.99% |
| Sediment | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.99% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.99% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil | 0.99% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.99% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.99% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 0.99% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.99% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.99% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.99% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.99% |
| Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 0.99% |
| Biofilm | Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm | 0.99% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.99% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.99% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.99% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 0.99% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2170459010 | Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!) | Environmental | Open in IMG/M |
| 3300003505 | Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924) | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300005169 | Soil and rhizosphere microbial communities from Laval, Canada - mgHPA | Environmental | Open in IMG/M |
| 3300005537 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 | Environmental | Open in IMG/M |
| 3300005541 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 | Environmental | Open in IMG/M |
| 3300005598 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 | Environmental | Open in IMG/M |
| 3300006047 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 | Environmental | Open in IMG/M |
| 3300006052 | Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013 | Environmental | Open in IMG/M |
| 3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
| 3300006893 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG | Environmental | Open in IMG/M |
| 3300006903 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5 | Host-Associated | Open in IMG/M |
| 3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
| 3300009521 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG | Environmental | Open in IMG/M |
| 3300010047 | Tropical forest soil microbial communities from Panama - MetaG Plot_30 | Environmental | Open in IMG/M |
| 3300010341 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2 | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300010937 | Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139 | Environmental | Open in IMG/M |
| 3300011269 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG | Environmental | Open in IMG/M |
| 3300012200 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG | Environmental | Open in IMG/M |
| 3300012207 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Host-Associated | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014657 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG | Environmental | Open in IMG/M |
| 3300015242 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300017822 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2 | Environmental | Open in IMG/M |
| 3300017823 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3 | Environmental | Open in IMG/M |
| 3300017924 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5 | Environmental | Open in IMG/M |
| 3300017927 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4 | Environmental | Open in IMG/M |
| 3300017975 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018002 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40 | Environmental | Open in IMG/M |
| 3300018012 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5 | Environmental | Open in IMG/M |
| 3300018062 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018090 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300020010 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2 | Environmental | Open in IMG/M |
| 3300020150 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021476 | Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2) | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300021861 | Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300022557 | Paint Pots_combined assembly | Environmental | Open in IMG/M |
| 3300024227 | Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 | Host-Associated | Open in IMG/M |
| 3300025464 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes) | Environmental | Open in IMG/M |
| 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026329 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes) | Environmental | Open in IMG/M |
| 3300026333 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes) | Environmental | Open in IMG/M |
| 3300027063 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes) | Environmental | Open in IMG/M |
| 3300027297 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes) | Environmental | Open in IMG/M |
| 3300027537 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027604 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027773 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027821 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027824 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027853 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027889 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes) | Environmental | Open in IMG/M |
| 3300027895 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027911 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes) | Environmental | Open in IMG/M |
| 3300028012 | Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE4 | Environmental | Open in IMG/M |
| 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028536 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Host-Associated | Open in IMG/M |
| 3300029636 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300030053 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2 | Environmental | Open in IMG/M |
| 3300030114 | I_Fen_E2 coassembly | Environmental | Open in IMG/M |
| 3300030706 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2) | Environmental | Open in IMG/M |
| 3300030707 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2) | Environmental | Open in IMG/M |
| 3300030737 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2 | Environmental | Open in IMG/M |
| 3300031090 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031232 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3 | Environmental | Open in IMG/M |
| 3300031716 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3 | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032059 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032828 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| 3300032897 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| 3300034125 | Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| F62_07196440 | 2170459010 | Grass Soil | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRAWQLA |
| JGIcombinedJ51221_101852912 | 3300003505 | Forest Soil | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWQL |
| Ga0062389_1004141752 | 3300004092 | Bog Forest Soil | MGPGFIGGRMNTIVIPTVVIPGVVSVLLFCVFTYLHEQSRQAYFRAWQLAWAFYSLHY |
| Ga0062595_1000090371 | 3300004479 | Soil | MNSSITASLVLPGVVPLLLFLLFTYLYVQSRQPYFRAWQM |
| Ga0066810_101347321 | 3300005169 | Soil | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRAWQL |
| Ga0070730_105953351 | 3300005537 | Surface Soil | MNSVFITTVLIPGFVSVLLFLVFTYLHEQSRQPYFR |
| Ga0070733_102999491 | 3300005541 | Surface Soil | MNSVVITTVILPGFVSILLFLVFTYLYEQSRQPYFRAWKWAWAFYSLHYVLDTFPSSPI |
| Ga0066706_108453372 | 3300005598 | Soil | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSLHYVLDTFP |
| Ga0075024_1008822211 | 3300006047 | Watersheds | MNSGVVITTVLIPGFVSVLLFLVFTYLYEQSRQAYF |
| Ga0075029_1001384812 | 3300006052 | Watersheds | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSFH |
| Ga0075029_1006441201 | 3300006052 | Watersheds | MLRGVLAAPMNSVVFTTVVIPGVVSALLFLVFYYLHQQSRQSYFFAWQLAWAAYSLHYV |
| Ga0075029_1009524111 | 3300006052 | Watersheds | MNSVVITTVVVPGFVSVLLFLVFTYLHEQSRQAYFRAWKWAWACYSLHYVLDAFPASSLAFFV |
| Ga0075030_1008055921 | 3300006162 | Watersheds | MNSVVITTVVIPGVVSVLLYFVFTYLYAQSRQPYFLAWKWAWA |
| Ga0070712_1003934032 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSFHYILDTFPTS |
| Ga0075434_1022809791 | 3300006871 | Populus Rhizosphere | MNSVVISAVVLPGVVPLLLFLVFTYLHEQSRQPYFRAWQLAW |
| Ga0073928_111969441 | 3300006893 | Iron-Sulfur Acid Spring | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQTYFRAWQLAWAAYSLHYILDTFPKS |
| Ga0075426_109252241 | 3300006903 | Populus Rhizosphere | MNNIALSSMLLPGVVPLLLFLVFTYLYQQSRQPYFR |
| Ga0075435_1005144241 | 3300007076 | Populus Rhizosphere | MNSVVITTAVIPGFVSVLLFLVFTYLHEQSHQPYFRAWQLAWAAYSLHYVLDTF |
| Ga0116222_11874851 | 3300009521 | Peatlands Soil | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRA |
| Ga0126382_117860952 | 3300010047 | Tropical Forest Soil | MNSVVITTALIPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAY |
| Ga0074045_103287951 | 3300010341 | Bog Forest Soil | MGPGVIGGRMNSVAIPTIIIPGVVSVLLFCVFTYLHEQSRQAYFRAWQLAWAFYSLHYALDILS |
| Ga0126379_110098121 | 3300010366 | Tropical Forest Soil | MNSSITASLVLPGIVPLLLFLLFTYLYVQSLQPYFRAWQMAWA |
| Ga0126381_1003373803 | 3300010376 | Tropical Forest Soil | MSGQVISTVVLPGAVALLLFLVFSYLHEQSRQPYFRAWQLAWA |
| Ga0126381_1010797902 | 3300010376 | Tropical Forest Soil | MNSVVITTVLIPGFVSVLLFLVFTYLYEQSRQPYFRAWQLAWAA |
| Ga0137776_16249661 | 3300010937 | Sediment | MNNAALSSMLLPGVVPLLLFLVFTYLYQQSRQPYFRAWQLAWAA |
| Ga0137392_100699054 | 3300011269 | Vadose Zone Soil | MNSIAISVVIIPGFVSVLLFLVFTYLHEQSRQAYFRAWQLAWTAYSLHYALDAFSFY |
| Ga0137382_107286762 | 3300012200 | Vadose Zone Soil | MNSVVITTAVIPGFVSVLLFLVFTYLHEQSHQPYFRAWQL |
| Ga0137381_105515092 | 3300012207 | Vadose Zone Soil | MNSIVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWQW |
| Ga0126369_134031381 | 3300012971 | Tropical Forest Soil | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSLHYVLDTFPSSSVA |
| Ga0157369_115683891 | 3300013105 | Corn Rhizosphere | MNSFDIAAIVLPAVVPLLLFLLFTYLYVQSRQPYFR |
| Ga0182024_104364412 | 3300014501 | Permafrost | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSLHY |
| Ga0181522_109459191 | 3300014657 | Bog | MGPGVIGGRMNSVAIPTIIIPGVVSVLLFCVFTYLHEQSRQAYFRAWQLAWAFYSLHYALDIL |
| Ga0137412_107523571 | 3300015242 | Vadose Zone Soil | MNSVVIPTIVIPGVVSVLLFFVFTYLHEQSRQAYFRAWQLAWAFYSLHYALD |
| Ga0187802_101203411 | 3300017822 | Freshwater Sediment | MNQVVITAVVIPGFVSVLLFLVFTYLHEQSRQPYSRAWQLAWAAYSLHYVLDTFPSSS |
| Ga0187818_100402182 | 3300017823 | Freshwater Sediment | MNSVVITTVVMPGFVSVLLFLVFSYLHEQSRQAYFRAWQ |
| Ga0187820_13310051 | 3300017924 | Freshwater Sediment | MNSVIITTAVVPGVVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYS |
| Ga0187824_103199092 | 3300017927 | Freshwater Sediment | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRAWQ |
| Ga0187782_104176052 | 3300017975 | Tropical Peatland | MNSVVITTVLIPGFVSVLLFLVFTYLYEQSRQQYFR |
| Ga0187868_11564572 | 3300018002 | Peatland | MNSLVITTVVIPGFVSLLLFLVFWYLHEQSRQSYFRAWQLAWAAYSLH |
| Ga0187810_102697811 | 3300018012 | Freshwater Sediment | MSIVFITTVLIPGFVSVLLFLVFWYLHEQSRQAYFRAWQVAWAAYSLHYVLDAFPASP |
| Ga0187784_106227391 | 3300018062 | Tropical Peatland | MNSVVITTVVVPGVVSVLLFLVFLYLYEQSRQPYFRAWLWA |
| Ga0187784_106425211 | 3300018062 | Tropical Peatland | MNSVVITTVLIPGFVSVLLFLVFTYLYEQSRQQYFRAWQLAWAAYSLHYV |
| Ga0187772_109242671 | 3300018085 | Tropical Peatland | MNSVVITTVLIPGIVSVLLFIVITYLHAQSWQAYFRAWQLAWAFYSIHYALKVFPG |
| Ga0187770_105218862 | 3300018090 | Tropical Peatland | MNSVVITSVVVPGIVSVLLFLVFTYLHEQSRQAYFRAWQLAWAAYSLHYVLDAFPSSP |
| Ga0193749_10309141 | 3300020010 | Soil | MNTIVISTLILPGVVALLLFLVFTYLHEQSRQPYFRAWQLG |
| Ga0187768_10486611 | 3300020150 | Tropical Peatland | MNSVVITTVVIPGIASVLLFMLFAYLYEQSRQDYFRAWKWAWAFY |
| Ga0210400_100148651 | 3300021170 | Soil | MNSVVITSVVIPGFVSALLFLVFSYLREQSHQPYFRAWQLAWAAYSLHYVL |
| Ga0210405_109662851 | 3300021171 | Soil | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSLHYILDTFPK |
| Ga0210386_116970322 | 3300021406 | Soil | MNSVATSVVIIPGVVSVLLFLVFTYLHEQSRQPYFRA |
| Ga0210383_107141872 | 3300021407 | Soil | MNSNVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWKWAWAFYSLHYVVDALPWSA |
| Ga0210384_103995811 | 3300021432 | Soil | MNSVVISTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWKWAWAFYSLHYVLDTFPSSP |
| Ga0187846_102072002 | 3300021476 | Biofilm | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSLHYVLDTFPSSSVAFFSV |
| Ga0210409_115566931 | 3300021559 | Soil | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAY |
| Ga0213853_101441602 | 3300021861 | Watersheds | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSLHYVLDTFPSSS |
| Ga0212123_100461825 | 3300022557 | Iron-Sulfur Acid Spring | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYS |
| Ga0228598_10107012 | 3300024227 | Rhizosphere | MDNLVIPAVVIPGFVSVLLFLVFTYLYEQSRQAYFRAW |
| Ga0208076_10812081 | 3300025464 | Arctic Peat Soil | MNSVVITTVLIPGFVSVLLFFVFTYLHEQSRQPYFRAWQLAWAAYS |
| Ga0207687_118069882 | 3300025927 | Miscanthus Rhizosphere | MNSSITASLVLPGVVPLLLFLPFTYLYVQSLQPYFRAWQMAWAAYTL |
| Ga0209375_12764702 | 3300026329 | Soil | MNSVAASVVIIPGVVSVLLFLVFTYLHEQSRQPYFRAWQMAWAAY |
| Ga0209158_10880662 | 3300026333 | Soil | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSLHYVLD |
| Ga0207762_10350922 | 3300027063 | Tropical Forest Soil | MNSVVITTVLVPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAFYSL |
| Ga0208241_10641041 | 3300027297 | Forest Soil | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQSYFRAWQLAWA |
| Ga0209419_10109491 | 3300027537 | Forest Soil | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQAYFRAWQLAWAAYSLHYVLDTFPKSPLAFF |
| Ga0208324_10501961 | 3300027604 | Peatlands Soil | MNSSEVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRA |
| Ga0209810_13700041 | 3300027773 | Surface Soil | MNSILVSTAILPGLVACLLFLLFSYLHEQSRQPYFRAWQLAWA |
| Ga0209811_100877371 | 3300027821 | Surface Soil | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSLHYVLDTFPSSSV |
| Ga0209040_105228511 | 3300027824 | Bog Forest Soil | MNSNVVITTVLIPGFVSALLFGVFSYLYAQSRQPYFLAW |
| Ga0209274_101803772 | 3300027853 | Soil | MNSTGFITTVLIPGFVSVLLFLVFTYLHEQSRQQYFRAWQLAWAAYSLHYVLDTF |
| Ga0209274_103035341 | 3300027853 | Soil | MNSNVVITTVLIPGFVSVLLYLVFTYLYEQSRQPYFRAWKWAWAFYSLHYVLDTFPSSA |
| Ga0209380_105819051 | 3300027889 | Soil | MDNLVIPAVVIPGFVSVLLFLVFTYLYEQSRQAYFRA |
| Ga0209624_100964412 | 3300027895 | Forest Soil | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSL |
| Ga0209698_106477752 | 3300027911 | Watersheds | MNSVVITTAVIPGVVSVLLFLVFTYLREQSRQAYFRAWQLAWAAYCLHY |
| Ga0209698_109621562 | 3300027911 | Watersheds | MNSVVITTVVVPGFVSVLLFLVFTYLHEQSRQAYFRAWKWAWACYSLHYVLDAFPSS |
| Ga0265346_1057381 | 3300028012 | Plant Litter | MNSVVITTVVIPGFVSVLLFLVFTYLHEQSRLPYFRAWQLAWAAYCL |
| Ga0268265_112570861 | 3300028380 | Switchgrass Rhizosphere | MNSSITASLVLPGVVPLLLFLLFTYLYVQSRQPYFRAWQ |
| Ga0137415_103819111 | 3300028536 | Vadose Zone Soil | MNSVATSVVIIPGVVSVLLFLVFTYLHEQSRQPYFRAWQMAW |
| Ga0265338_104837412 | 3300028800 | Rhizosphere | MNSVVITTAVIPGFVSVLLFLVFTYLHEQSRQPYFRA |
| Ga0222749_105926441 | 3300029636 | Soil | MNSNPVVITTLIPGIVSVLLFLVFTYLHEQSRLPYFRAWQLAWAAYSLHYVLD |
| Ga0311338_111961942 | 3300030007 | Palsa | MNSTEFITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRA |
| Ga0302177_105117052 | 3300030053 | Palsa | MDNLVIPAVVIPGVVSVLLFLVFTYLYEQSRQPYFRAWKWAWAAYSLHYVLDAFSF |
| Ga0311333_107743792 | 3300030114 | Fen | MNSIVVDSVLVPATLALLLFLVFTYLHEQSRQPYFRA |
| Ga0310039_101662581 | 3300030706 | Peatlands Soil | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFRAWQWAWAAYSLHYVLDAFPASAI |
| Ga0310038_1000287414 | 3300030707 | Peatlands Soil | MNSVVITTVVIPGTASVLLFMLFAYLYEQSHQAYFRAWKWAWAFYSLHYVLD |
| Ga0310038_102947591 | 3300030707 | Peatlands Soil | MNSVVITTVVIPGVVSVLLYFVFTYLYAQSRQPYFL |
| Ga0302310_104129173 | 3300030737 | Palsa | MNSNVVITTVLIPGFVSVLLYFVFTYLHEQSRQPYFRAWQLAWAAYSVHYVLDIFPTSS |
| Ga0265760_100104931 | 3300031090 | Soil | MNSNVVITTVLIPGFVSVLLYFVFTYLHEQSRQPYFRAWQLAWAAYSVH |
| Ga0170824_1208223402 | 3300031231 | Forest Soil | MNSIVITTVLIPGFVSALLFGVFSYLYAQSRQPYFL |
| Ga0302323_1025150531 | 3300031232 | Fen | MNSIVVDSVLVPATMALLLFLVFTYLHEQSRQPYFRAWQLG |
| Ga0310813_119932551 | 3300031716 | Soil | MNSVVISAVVLPGVVPLLLFLVFTYLHEQSRQPYFR |
| Ga0306917_113967472 | 3300031719 | Soil | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRA |
| Ga0307473_109242742 | 3300031820 | Hardwood Forest Soil | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSLHYVLDTFP |
| Ga0306926_119970762 | 3300031954 | Soil | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSLHYVLDTFPS |
| Ga0318533_107155561 | 3300032059 | Soil | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRVWQLAWAAYSLHY |
| Ga0335079_104710092 | 3300032783 | Soil | MNGVVISTAVIPGFVSVLLFLVFTYLHEQSRQPYFRAW |
| Ga0335078_106599092 | 3300032805 | Soil | MNSVVITTVLIPGFVSVLLFLVFTYLHEQSRQPYFR |
| Ga0335080_106506451 | 3300032828 | Soil | MNSVVITTAVIPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAAYSLH |
| Ga0335069_123172562 | 3300032893 | Soil | MISGLAISTVVIPAVVSVLLFLVFTYLYEQGRQSYFRAWQ |
| Ga0335071_106023712 | 3300032897 | Soil | MNSVVITTAVVPGFVSVLLFLVFTYLHEQSRQPYFRAWQLAWAA |
| Ga0335083_110150441 | 3300032954 | Soil | MNNIFITTVLVPGSVSVLLFLVFSYLYEQSRQPYFRAWQLAWAAYSL |
| Ga0335076_104158302 | 3300032955 | Soil | MNSVVITTVLIPGFVSVLLFLVFTYLREQSRQQYFRAWQLAWAA |
| Ga0370484_0206180_1_165 | 3300034125 | Untreated Peat Soil | MNSVIITTVLIPGFVSVLLFLVFTYLHEQSRQQYFRAWKWAWAFYSLHYVLDTFP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |