NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F045449

Metagenome / Metatranscriptome Family F045449

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F045449
Family Type Metagenome / Metatranscriptome
Number of Sequences 153
Average Sequence Length 42 residues
Representative Sequence AVGLWLLRSELPNDLRRRKAAYPAVAEGESKEILGAGTQP
Number of Associated Samples 129
Number of Associated Scaffolds 153

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.65 %
% of genes near scaffold ends (potentially truncated) 99.35 %
% of genes from short scaffolds (< 2000 bps) 88.24 %
Associated GOLD sequencing projects 121
AlphaFold2 3D model prediction Yes
3D model pTM-score0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (86.275 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(11.765 % of family members)
Environment Ontology (ENVO) Unclassified
(24.837 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(49.673 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.00%    β-sheet: 0.00%    Coil/Unstructured: 50.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.29
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 153 Family Scaffolds
PF05995CDO_I 28.76
PF04519Bactofilin 6.54
PF07722Peptidase_C26 5.88
PF13781DoxX_3 5.88
PF02604PhdYeFM_antitox 3.27
PF13545HTH_Crp_2 2.61
PF01850PIN 1.96
PF13761DUF4166 1.96
PF027395_3_exonuc_N 1.96
PF13432TPR_16 1.31
PF02630SCO1-SenC 1.31
PF05050Methyltransf_21 1.31
PF02810SEC-C 0.65
PF07719TPR_2 0.65
PF03852Vsr 0.65
PF13391HNH_2 0.65
PF03992ABM 0.65
PF00115COX1 0.65
PF14559TPR_19 0.65
PF01435Peptidase_M48 0.65
PF01339CheB_methylest 0.65
PF05168HEPN 0.65
PF00481PP2C 0.65
PF069833-dmu-9_3-mt 0.65
PF04343DUF488 0.65

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 153 Family Scaffolds
COG5553Predicted metal-dependent enzyme of the double-stranded beta helix superfamilyGeneral function prediction only [R] 28.76
COG1664Cytoskeletal protein CcmA, bactofilin familyCytoskeleton [Z] 6.54
COG2161Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM familyDefense mechanisms [V] 3.27
COG4118Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressorDefense mechanisms [V] 3.27
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 1.96
COG1225PeroxiredoxinPosttranslational modification, protein turnover, chaperones [O] 1.31
COG1999Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC familyPosttranslational modification, protein turnover, chaperones [O] 1.31
COG2201Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domainsSignal transduction mechanisms [T] 1.31
COG0631Serine/threonine protein phosphatase PrpCSignal transduction mechanisms [T] 0.65
COG1895HEPN domain protein, predicted toxin of MNT-HEPN systemDefense mechanisms [V] 0.65
COG2250HEPN domain protein, predicted toxin of MNT-HEPN systemDefense mechanisms [V] 0.65
COG2764Zn-dependent glyoxalase, PhnB familyEnergy production and conversion [C] 0.65
COG3189Uncharacterized conserved protein YeaO, DUF488 familyFunction unknown [S] 0.65
COG3727G:T-mismatch repair DNA endonuclease Vsr, very short patch repair proteinReplication, recombination and repair [L] 0.65
COG3865Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferaseGeneral function prediction only [R] 0.65


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms86.27 %
UnclassifiedrootN/A13.73 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000567|JGI12270J11330_10098303Not Available1289Open in IMG/M
3300000789|JGI1027J11758_12170621Not Available668Open in IMG/M
3300001356|JGI12269J14319_10351035All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300003219|JGI26341J46601_10068928All Organisms → cellular organisms → Bacteria1073Open in IMG/M
3300004080|Ga0062385_10890499All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales590Open in IMG/M
3300004476|Ga0068966_1247562All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium607Open in IMG/M
3300005332|Ga0066388_106536697All Organisms → cellular organisms → Bacteria588Open in IMG/M
3300005533|Ga0070734_10255315All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1005Open in IMG/M
3300005534|Ga0070735_10834219Not Available542Open in IMG/M
3300005537|Ga0070730_10656495All Organisms → cellular organisms → Bacteria667Open in IMG/M
3300005541|Ga0070733_10218446All Organisms → cellular organisms → Bacteria1249Open in IMG/M
3300005541|Ga0070733_11092397All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300005542|Ga0070732_10238288All Organisms → cellular organisms → Bacteria1089Open in IMG/M
3300005563|Ga0068855_100639188All Organisms → cellular organisms → Bacteria1144Open in IMG/M
3300005712|Ga0070764_10060036All Organisms → cellular organisms → Bacteria1966Open in IMG/M
3300005712|Ga0070764_10230512All Organisms → cellular organisms → Bacteria1048Open in IMG/M
3300005712|Ga0070764_10234223All Organisms → cellular organisms → Bacteria1040Open in IMG/M
3300005712|Ga0070764_10378609Not Available832Open in IMG/M
3300005921|Ga0070766_10847275All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium624Open in IMG/M
3300006028|Ga0070717_11240080Not Available678Open in IMG/M
3300006050|Ga0075028_100140517All Organisms → cellular organisms → Bacteria1267Open in IMG/M
3300006052|Ga0075029_100399712All Organisms → cellular organisms → Bacteria893Open in IMG/M
3300006052|Ga0075029_101224019All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300006059|Ga0075017_100149525All Organisms → cellular organisms → Bacteria1661Open in IMG/M
3300006086|Ga0075019_10119614All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1525Open in IMG/M
3300006102|Ga0075015_100916192All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium532Open in IMG/M
3300006162|Ga0075030_100061909All Organisms → cellular organisms → Bacteria3101Open in IMG/M
3300006162|Ga0075030_100441344All Organisms → cellular organisms → Bacteria1036Open in IMG/M
3300006173|Ga0070716_100036568All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2708Open in IMG/M
3300006174|Ga0075014_100172848All Organisms → cellular organisms → Bacteria1072Open in IMG/M
3300006800|Ga0066660_10239702All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1411Open in IMG/M
3300006893|Ga0073928_10049840All Organisms → cellular organisms → Bacteria3787Open in IMG/M
3300006954|Ga0079219_11946214All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300009012|Ga0066710_104219072All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300009523|Ga0116221_1043759All Organisms → cellular organisms → Bacteria2126Open in IMG/M
3300009623|Ga0116133_1164276All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300009623|Ga0116133_1171505Not Available575Open in IMG/M
3300010043|Ga0126380_11074609All Organisms → cellular organisms → Bacteria684Open in IMG/M
3300010043|Ga0126380_11621780All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300010048|Ga0126373_10597724All Organisms → cellular organisms → Bacteria1155Open in IMG/M
3300010341|Ga0074045_10098125All Organisms → cellular organisms → Bacteria2031Open in IMG/M
3300010341|Ga0074045_10102102All Organisms → cellular organisms → Bacteria1983Open in IMG/M
3300010358|Ga0126370_10664207All Organisms → cellular organisms → Bacteria910Open in IMG/M
3300010361|Ga0126378_11132544All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300010366|Ga0126379_10160614All Organisms → cellular organisms → Bacteria → Acidobacteria2109Open in IMG/M
3300010379|Ga0136449_101101326All Organisms → cellular organisms → Bacteria1264Open in IMG/M
3300010398|Ga0126383_10249467All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1741Open in IMG/M
3300010401|Ga0134121_10493312All Organisms → cellular organisms → Bacteria1126Open in IMG/M
3300011120|Ga0150983_11817378All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1010Open in IMG/M
3300011271|Ga0137393_10211987All Organisms → cellular organisms → Bacteria → Acidobacteria1637Open in IMG/M
3300012200|Ga0137382_11185182All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300012203|Ga0137399_10070871All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2614Open in IMG/M
3300012354|Ga0137366_10238304All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1351Open in IMG/M
3300012357|Ga0137384_10440178All Organisms → cellular organisms → Bacteria1074Open in IMG/M
3300012924|Ga0137413_11273485All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300012927|Ga0137416_10519191All Organisms → cellular organisms → Bacteria1028Open in IMG/M
3300013297|Ga0157378_11637509All Organisms → cellular organisms → Bacteria690Open in IMG/M
3300014168|Ga0181534_10020122All Organisms → cellular organisms → Bacteria3385Open in IMG/M
3300014169|Ga0181531_10214682All Organisms → cellular organisms → Bacteria1170Open in IMG/M
3300014200|Ga0181526_10888538All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300014201|Ga0181537_10038802All Organisms → cellular organisms → Bacteria3258Open in IMG/M
3300014495|Ga0182015_10800297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus592Open in IMG/M
3300015195|Ga0167658_1042341All Organisms → cellular organisms → Bacteria1148Open in IMG/M
3300015241|Ga0137418_10505842Not Available965Open in IMG/M
3300017822|Ga0187802_10171394All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300017934|Ga0187803_10337139All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300017938|Ga0187854_10204565All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium871Open in IMG/M
3300017943|Ga0187819_10278887All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia974Open in IMG/M
3300017970|Ga0187783_10259187All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1271Open in IMG/M
3300017975|Ga0187782_10798687All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300017988|Ga0181520_10845803All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium614Open in IMG/M
3300017995|Ga0187816_10135854All Organisms → cellular organisms → Bacteria1062Open in IMG/M
3300018042|Ga0187871_10206511All Organisms → cellular organisms → Bacteria1097Open in IMG/M
3300018085|Ga0187772_10083741All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA1172027Open in IMG/M
3300018085|Ga0187772_10156298All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae1511Open in IMG/M
3300018085|Ga0187772_10524710All Organisms → cellular organisms → Bacteria837Open in IMG/M
3300018468|Ga0066662_11196252All Organisms → cellular organisms → Bacteria769Open in IMG/M
3300019158|Ga0184580_116995All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales785Open in IMG/M
3300019256|Ga0181508_1087731All Organisms → cellular organisms → Bacteria668Open in IMG/M
3300019260|Ga0181506_1138755Not Available849Open in IMG/M
3300019888|Ga0193751_1034797All Organisms → cellular organisms → Bacteria2316Open in IMG/M
3300019890|Ga0193728_1352864All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium527Open in IMG/M
3300020579|Ga0210407_10293926All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia maris1268Open in IMG/M
3300020580|Ga0210403_10140725All Organisms → cellular organisms → Bacteria1970Open in IMG/M
3300020580|Ga0210403_10340182All Organisms → cellular organisms → Bacteria1228Open in IMG/M
3300020580|Ga0210403_10852865All Organisms → cellular organisms → Bacteria → Acidobacteria721Open in IMG/M
3300020582|Ga0210395_10050732All Organisms → cellular organisms → Bacteria3039Open in IMG/M
3300020582|Ga0210395_11204658Not Available556Open in IMG/M
3300020583|Ga0210401_10039423All Organisms → cellular organisms → Bacteria4482Open in IMG/M
3300021171|Ga0210405_10717457All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales771Open in IMG/M
3300021181|Ga0210388_11504079All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300021404|Ga0210389_10136984All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae1895Open in IMG/M
3300021405|Ga0210387_11063539All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300021432|Ga0210384_11327458All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300021478|Ga0210402_10281081All Organisms → cellular organisms → Bacteria → Acidobacteria1539Open in IMG/M
3300022522|Ga0242659_1064084All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales673Open in IMG/M
3300022557|Ga0212123_10155722All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia maris1756Open in IMG/M
3300022557|Ga0212123_10190324All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1533Open in IMG/M
3300022730|Ga0224570_107693Not Available665Open in IMG/M
3300023046|Ga0233356_1018636All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60800Open in IMG/M
3300025320|Ga0209171_10102801All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia maris1745Open in IMG/M
3300025498|Ga0208819_1068163All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium790Open in IMG/M
3300025812|Ga0208457_1087548All Organisms → cellular organisms → Bacteria → Acidobacteria582Open in IMG/M
3300025906|Ga0207699_11186966All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300025928|Ga0207700_10277165All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1441Open in IMG/M
3300025929|Ga0207664_11348063All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300025929|Ga0207664_11497138All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300025939|Ga0207665_10129964All Organisms → cellular organisms → Bacteria1787Open in IMG/M
3300025949|Ga0207667_10812173All Organisms → cellular organisms → Bacteria931Open in IMG/M
3300026467|Ga0257154_1021107All Organisms → cellular organisms → Bacteria → Acidobacteria946Open in IMG/M
3300026467|Ga0257154_1073455All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300026557|Ga0179587_11092894Not Available525Open in IMG/M
3300027072|Ga0208238_1009747Not Available806Open in IMG/M
3300027565|Ga0209219_1015023All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1846Open in IMG/M
3300027867|Ga0209167_10722168All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300027867|Ga0209167_10737755All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300027869|Ga0209579_10558046All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales622Open in IMG/M
3300027898|Ga0209067_10208170All Organisms → cellular organisms → Bacteria1053Open in IMG/M
3300027898|Ga0209067_10358045All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium811Open in IMG/M
3300027986|Ga0209168_10570928Not Available542Open in IMG/M
3300028012|Ga0265346_102921All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Frigoriglobus → Frigoriglobus tundricola617Open in IMG/M
3300028047|Ga0209526_10720996All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300028776|Ga0302303_10328297Not Available513Open in IMG/M
3300028906|Ga0308309_10360828All Organisms → cellular organisms → Bacteria1240Open in IMG/M
3300029882|Ga0311368_10700374All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300029903|Ga0247271_100603All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae9881Open in IMG/M
3300029908|Ga0311341_10297762All Organisms → cellular organisms → Bacteria → Proteobacteria960Open in IMG/M
3300029999|Ga0311339_10057280All Organisms → cellular organisms → Bacteria5155Open in IMG/M
3300030020|Ga0311344_11373876All Organisms → cellular organisms → Bacteria → Acidobacteria520Open in IMG/M
3300030058|Ga0302179_10329048Not Available673Open in IMG/M
3300030509|Ga0302183_10129510All Organisms → cellular organisms → Bacteria → Acidobacteria993Open in IMG/M
3300030730|Ga0307482_1103799All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales781Open in IMG/M
3300031234|Ga0302325_13344430Not Available507Open in IMG/M
3300031258|Ga0302318_10408486All Organisms → cellular organisms → Bacteria → Proteobacteria685Open in IMG/M
3300031474|Ga0170818_103535256All Organisms → cellular organisms → Bacteria872Open in IMG/M
3300031525|Ga0302326_10099052All Organisms → cellular organisms → Bacteria5231Open in IMG/M
3300031708|Ga0310686_100444819All Organisms → cellular organisms → Bacteria845Open in IMG/M
3300031708|Ga0310686_112780781All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium618Open in IMG/M
3300031718|Ga0307474_11048088All Organisms → cellular organisms → Bacteria645Open in IMG/M
3300031754|Ga0307475_10230826Not Available1482Open in IMG/M
3300031754|Ga0307475_11446289Not Available529Open in IMG/M
3300031823|Ga0307478_10061264All Organisms → cellular organisms → Bacteria2818Open in IMG/M
3300031823|Ga0307478_10625967All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium900Open in IMG/M
3300031823|Ga0307478_11808686All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300031897|Ga0318520_10857655Not Available571Open in IMG/M
3300031962|Ga0307479_10769492All Organisms → cellular organisms → Bacteria939Open in IMG/M
3300032160|Ga0311301_12936997All Organisms → cellular organisms → Bacteria → Acidobacteria515Open in IMG/M
3300032515|Ga0348332_10875672Not Available621Open in IMG/M
3300032515|Ga0348332_14603568All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales898Open in IMG/M
3300032783|Ga0335079_10093629All Organisms → cellular organisms → Bacteria → Acidobacteria3407Open in IMG/M
3300032829|Ga0335070_11343959Not Available653Open in IMG/M
3300033412|Ga0310810_10723123All Organisms → cellular organisms → Bacteria920Open in IMG/M
3300034163|Ga0370515_0154882All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales982Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil11.76%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds7.19%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil6.54%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.88%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.23%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.58%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa4.58%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.92%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil3.92%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.92%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog3.27%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.27%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.27%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.61%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.61%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.61%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring2.61%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.61%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog1.96%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.31%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.31%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.31%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.31%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.31%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.31%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.31%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.31%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.65%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.65%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.65%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.65%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.65%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.65%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.65%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.65%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.65%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.65%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000567Peat soil microbial communities from Weissenstadt, Germany - SII-2010EnvironmentalOpen in IMG/M
3300000789Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300003219Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004476Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009623Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300015195Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300017988Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaGEnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019158Soil microbial communities from Bohemian Forest, Czech Republic ? CSI1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019256Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019260Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300019890Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300022522Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300022730Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU2Host-AssociatedOpen in IMG/M
3300023046Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MSEnvironmentalOpen in IMG/M
3300025320Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025498Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150 (SPAdes)EnvironmentalOpen in IMG/M
3300025812Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150 (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026467Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-AEnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027072Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF013 (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027898Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028012Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE4EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028776Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029903Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703EnvironmentalOpen in IMG/M
3300029908II_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030020II_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300030058Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030509Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2EnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031258Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1EnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12270J11330_1009830313300000567Peatlands SoilAAATAGGLWLLRSQLPDDLRRRKATAYPGVAQGQSGEILGSGTQP*
JGI1027J11758_1217062113300000789SoilTGAVAVGLWLLKSELPRDLRRRKQAAYPAVAEGESKEILGAGR*
JGI12269J14319_1035103513300001356Peatlands SoilAVAAGLWLLRSELPGDLRRRKGAVYPVVAQGQSQEISDAGREP*
JGI26341J46601_1006892813300003219Bog Forest SoilLVSVTWLAAVAAGLWLLRSELPGDLRHRKGAVYPVVAQGQSQEISDAGREP*
Ga0062385_1089049923300004080Bog Forest SoilAAAVGLWLLKSQLPNDLRRRKATAYPAVAEGESKEILGSGTQP*
Ga0068966_124756213300004476Peatlands SoilVGLWLLRSQLPNDLRRRKATAYPAVAEGESKEIMGAGTQP*
Ga0066388_10653669713300005332Tropical Forest SoilITWAAAAAAGLWMLKSELPRDLRRRKAAAYPAVAQAESKEILAGGREP*
Ga0070734_1025531513300005533Surface SoilRSELPGDLRRRKRAAYPSVAQGESKEILGAGTEP*
Ga0070735_1083421913300005534Surface SoilLWLLKSELPRDLRRRKQAAYPAVAEGESKEIMSAGR*
Ga0070730_1065649513300005537Surface SoilLGLVSVTWAAAVAVGLWLLRSELPGDLRRRRGAVYPEVAQVETREILGAGK*
Ga0070733_1021844613300005541Surface SoilTAVGLWLLRSQLPNDLRRRKTAYPAVAEGESKEIMGAGTQP*
Ga0070733_1109239723300005541Surface SoilAAAVAAGLWLLRSELPQDLRRKKGTAVYPSVAQGEAKEILGAGREA*
Ga0070732_1023828813300005542Surface SoilWLLRSELPRDLRQRKTAAYPAVAQDESREIMGAGR*
Ga0068855_10063918833300005563Corn RhizosphereWAAAALAGLWLLRSELPRDLRRRKAAAYPVVAHDESKEILGAGR*
Ga0070764_1006003643300005712SoilAAGLWLLKSQLPNDLRRRKATAYPAVAEGESKEILGSGTRP*
Ga0070764_1023051233300005712SoilGLWLVGSELPGDLRRRKGAVYPAVAAGETKEILGAGREP*
Ga0070764_1023422323300005712SoilAAGLWLLKSQLPNDLRRRKATAYPAVAEGESKEILGSGTQP*
Ga0070764_1037860923300005712SoilWGAAAALGLWLLKSQLPGDLRRRKQVAYPAVAQNETKEIMGAGTQP*
Ga0070766_1084727513300005921SoilSVTWAAATALGLWLLKSELPRDLRRRKQAAYPAVAEGESKEILGAGR*
Ga0070717_1124008023300006028Corn, Switchgrass And Miscanthus RhizosphereAAATAVGLWLLRSQLPNDLRRRKTAYPAVAEGESKEIMGAGTQP*
Ga0075028_10014051713300006050WatershedsLLKSDLPRALRRRKGAVYPAVAQNESKEILGAGR*
Ga0075029_10039971223300006052WatershedsTWAAAAAAGLWLLKSELPRDLRRRRAAAYPAVAQAESKEILGAGREP*
Ga0075029_10122401913300006052WatershedsAAVAAGLWLLKSDLPRDLRRRKGAVYPAVAQGESKEILGAGREP*
Ga0075017_10014952513300006059WatershedsLGLITVTWAAAVAGGLWLLRSELPGDLRRRKAAAYPAVAQGETKEILGAGREP*
Ga0075019_1011961413300006086WatershedsAAAAGLWLLKSELPRDLRRRRAAAYPAVAQAESKEILGAGREP*
Ga0075015_10091619223300006102WatershedsGLWLLRSDLPRELRRRKGAVYPAVAQGETKEILGAGTQP*
Ga0075030_10006190933300006162WatershedsMVQSELPGELRRKKAAAYPAVAQDGSKEIMGSGTQP*
Ga0075030_10044134413300006162WatershedsLGLWLLKSELPRDLRRRRAAAYPAVAQAESKEIMGAGREP*
Ga0070716_10003656853300006173Corn, Switchgrass And Miscanthus RhizosphereWAAAVAAGLWLLKSELPRDIRRRRKTAAYPAVAEGESKEILGAGR*
Ga0075014_10017284813300006174WatershedsLWLLRSELPGDLRRRKGAVYPAVAQGGSKEILGAGTQP*
Ga0066660_1023970233300006800SoilVTWAAATALGLWLLKSELPRDLRRRRAAAYPAVAQAQSKEIMSAGREP*
Ga0073928_1004984053300006893Iron-Sulfur Acid SpringWLLRSELPGDLRRRKVTAYPGVAEGQSKEILGAGTQP*
Ga0079219_1194621423300006954Agricultural SoilTWMAAAMAGLWLMRSELPRDLRRRKAAAYPVVAHDESKEILGAGR*
Ga0066710_10421907213300009012Grasslands SoilAAAVAAGLWLLRSELPADLRRRKGAVYPVVAQGQTKEISEAGTQP
Ga0116221_104375933300009523Peatlands SoilWAAATAGGLWLLRSQLPDDLRRRKATAYPGVAQGQSGEILGSGTQP*
Ga0116133_116427623300009623PeatlandTQLALVSLTWAAAVAAGLWLLRSELPADLRRRKGAVYPSVAQGEAKEILDAGREP*
Ga0116133_117150523300009623PeatlandAAGLWLLRSELPGDLRRRKVTAYPGVAEGQSKEILGAGTQP*
Ga0126380_1107460923300010043Tropical Forest SoilVAAGLWLVNSELPRDLRRRRAAAYPAVAQGQSKEILGAGR*
Ga0126380_1162178023300010043Tropical Forest SoilATWAAGAAAGLWLLKSELPRDLRRRRVTAYPAVAQDESNEILGAGREP*
Ga0126373_1059772433300010048Tropical Forest SoilWLLGSELPRDLRRRRQTAYPAVAQAESKEIMGAGREP*
Ga0074045_1009812513300010341Bog Forest SoilAVGLWLLRSELPGDLRRRKGAVYPAVAQGGSKEILGSGREP*
Ga0074045_1010210243300010341Bog Forest SoilVAAGLWLLGSELPLDLRRRKGAVYPAVAQGGSREILGSGREP*
Ga0126370_1066420713300010358Tropical Forest SoilTWTAAVAAGLWLLKSELPRDLRRRRAAAYPAVAQTESKEILGAGREP*
Ga0126378_1113254413300010361Tropical Forest SoilAAAAAGLWLLRSELPRDLRRRRAAAYPAVAQDQSKEILGAGK*
Ga0126379_1016061443300010366Tropical Forest SoilAWAAAAWAGLWLLGSELPRDLRRRRRTAYPAVAHAESKEIMGAGREP*
Ga0136449_10110132633300010379Peatlands SoilWLAAVAAGLWLLRSELPGDLRRRKGAVYPVVAQGQSKEISDAGREP*
Ga0126383_1024946743300010398Tropical Forest SoilGLWLLKSELPGDLRRRRAAAYPAVAQAQSKEILDVGREP*
Ga0134121_1049331233300010401Terrestrial SoilLWLLRSELPGDLRRRKGAVYPVVAQGESKEISDAGTQP*
Ga0150983_1181737813300011120Forest SoilTWAAAVAAGLWLLRSDLPRALRRRKGAVYPAVAQGETKEILGAGTQP*
Ga0137393_1021198733300011271Vadose Zone SoilAGLWLLRSELPKDLWRRRVAEYPAVAGVQPEETRGAGAHP*
Ga0137382_1118518223300012200Vadose Zone SoilVAAGLWLLRSELPADLRRRKGAVYPVVAQGQTKEISEAGTQP*
Ga0137399_1007087143300012203Vadose Zone SoilWAAAVAGGLWLLRSRLPLDLRRRKATAYPGVAQGESTEIIRTGGQP*
Ga0137366_1023830413300012354Vadose Zone SoilSLTWAAAVAAGLWLLRSELPRDLRRRKGAVYPVVAQGQSKEMSEAGTQP*
Ga0137384_1044017813300012357Vadose Zone SoilLRSELPGDLRRRKGAVYPSVAQGQSKEILGAGTQP*
Ga0137413_1127348523300012924Vadose Zone SoilAAAAVAAGLWLLRSELPGDLRRRKTAVHPSVAHGESKEILGAGREP*
Ga0137416_1051919123300012927Vadose Zone SoilGLWLLRSRLPLDLRRRKATAYPGVAQGESTEIIRTGAQP*
Ga0157378_1163750913300013297Miscanthus RhizosphereTGTWAAAVAAALWLLRAELPGDLRRRKGAVYPVVAQGESKEISDAGTQP*
Ga0181534_1002012253300014168BogAGLWLTRSELPGDLRRRKVTAYPGVAEGQSKEILGAGREP*
Ga0181531_1021468233300014169BogAAVAAGLWLLRSELPADLRRRKGAVYPSVAQGESKEILGAGREP*
Ga0181526_1088853823300014200BogLWLLRSELPGDLRRRKGAVYPVVAQGQSKEISDAGREP*
Ga0181537_1003880243300014201BogLWLLRSELPQDLRRRKGAVYPAGAQGESKEILSAGR*
Ga0182015_1080029723300014495PalsaVLKSQLPNELRPRKKIAYPAVAQSEGKEILDAGTQP*
Ga0167658_104234113300015195Glacier Forefield SoilAVGLWLLRSQLPNDLRRRKATAYPAVAEGESKEIMGAGTQP*
Ga0137418_1050584213300015241Vadose Zone SoilVFRARQWLLRSQLPNDLRRRKTAYPAVAEGESKEIMGAGTQP*
Ga0187802_1017139413300017822Freshwater SedimentAVLAGLWLLRSELPRDLRRRRQTAYPAVAQVESKEIMGAGRD
Ga0187803_1033713913300017934Freshwater SedimentGLWLLKSELPRDLRRRRAAAYPSVAQAESKEILGAGREP
Ga0187854_1020456513300017938PeatlandTWAAATLAGLWLLKSQLPSDLRRRKQIAYPAVAHNEGKEILGAGTEP
Ga0187819_1027888713300017943Freshwater SedimentAAVAAGLWLLRSELPGDLRRRKGAVYPAVAQGGSREILGSGREP
Ga0187783_1025918743300017970Tropical PeatlandWLLRSELPADLRRRKGAVYPAVAQGGSKEILGAGTQP
Ga0187782_1079868733300017975Tropical PeatlandVAAGLWLLKSDLPRDLRRRKGAVYPAVAQGESNEILDAGREP
Ga0181520_1084580323300017988BogAAAALLGLWLLRSQLPNDLRRRKKTAYPGVAEGESKEIMGAGREP
Ga0187816_1013585443300017995Freshwater SedimentLLRSELPQALRRRKGAVYPAVAQGGSREIVGSGREP
Ga0187871_1020651113300018042PeatlandAGLWLTRSELPGDLRRRKATAYPGVAEGQGEEIMDAGREP
Ga0187772_1008374143300018085Tropical PeatlandGLRLLRSQLPNDLRRRKAAYPAVAEGEGKEILGAGTQP
Ga0187772_1015629813300018085Tropical PeatlandGLWLLGSELPRDLRRRKGAVYPAVAQGGSREILGSGREP
Ga0187772_1052471023300018085Tropical PeatlandGLWLLGSELPQDLRRRKGAVYPAVAQGGSREILGSGTQP
Ga0066662_1119625213300018468Grasslands SoilMAGLWLMRSELAGDLRRRNAAAYPAVAQDESREILGAGR
Ga0184580_11699523300019158SoilAVAVGLWLLRSQLPNDLRRRKKTAYPGVAEGESKEIMGAGTQP
Ga0181508_108773123300019256PeatlandVAAGLWLLRSELPQDLRRRKGAVYPAVAQGESKEILSAGR
Ga0181506_113875513300019260PeatlandLRSQLPNDLRRRKATAYPAVAQVEGKEIMGAGTQP
Ga0193751_103479713300019888SoilVAGGLWLLGSELPGDLRRRKGAVYPSVAQGETKEILGAGTQP
Ga0193728_135286413300019890SoilAVGLWLLKSQLPNDLRRRKAAYPAVAEGESKEILGAGTQP
Ga0210407_1029392633300020579SoilATAVGLWLLKSQLPNDLRRRKTAYPAVAEGESKEIMGAGTQP
Ga0210403_1014072513300020580SoilGRVSITGLAAVAAGLWLLRSELPGDLRRRKGAVFPAVAQGGGKEILGAGREP
Ga0210403_1034018213300020580SoilLVSLTWLAAVAAGLWLLGSELPGDLRRRKGAVYPSVAAGETKEILGAGREP
Ga0210403_1085286523300020580SoilVTWAAATALGLWLLRSELPRDLRRRKQAAYPAVAEGESKEILGAGR
Ga0210395_1005073253300020582SoilGLWLLKSELPRDLRRRKQAAYPAVAEGESKEILGAGR
Ga0210395_1120465813300020582SoilLLRSELPGDLRRRKETAYPGVAEGESKEILGAGREP
Ga0210401_1003942313300020583SoilAATGVGLRLLKSQLPNELRPRKKIAYPAVAQSEGKEILDAGTQP
Ga0210405_1071745713300021171SoilAVGLWLLRSELPNDLRRRKAAYPAVAEGESKEILGAGTQP
Ga0210388_1150407913300021181SoilVAGLWLLKSELPGDLRRKRQVAYPAAAHRGTGEILETGREP
Ga0210389_1013698443300021404SoilVGLGLLKSQLPNDLRRRKTAYPAVAEGESKEIMGAGTQP
Ga0210387_1106353913300021405SoilLKSELPRDLRRRRAAAYPALAQAQSKEIMGAGREP
Ga0210384_1132745813300021432SoilLVSVTWAAAVAAGLWLLRSELPGDLRRRKGAVYPEVAQGQTKEISDAGTQP
Ga0210402_1028108143300021478SoilWAAAVAAGLWLLRSELPGDLRRRKGAVYPAVAQGESKEILGAGREP
Ga0242659_106408423300022522SoilAAAAVGLWLLRSRLPNDLRRRKVTAYPAVAEGESKEILGSGTQP
Ga0212123_1015572233300022557Iron-Sulfur Acid SpringAVAAGLWLLRSELPGDLRRRKVTAYPGVAEGQSKEILGAGTQP
Ga0212123_1019032443300022557Iron-Sulfur Acid SpringLKSQLPNDLRRRKQIAYPAVAHNEGKEILGAGTEP
Ga0224570_10769313300022730RhizosphereGAVGLWLLRSQLPNDLRRRKATAYPAVAEGESKEILGSGTQP
Ga0233356_101863613300023046SoilWLLRSQLPNDLRRRRTAYPAVAEGESKEIMGAGTQP
Ga0209171_1010280133300025320Iron-Sulfur Acid SpringGLWLLRSELPGDLRRRKVTAYPGVAEGQSKEILGAGTQP
Ga0208819_106816333300025498PeatlandVTWAAATLAGLWLLKSQLPSDLRRRKQIAYPAVAHNEGKEILGAGTEP
Ga0208457_108754823300025812PeatlandLKSQLPNDLRRRRKIAYPAVAEAEGKEIMGAGTQP
Ga0207699_1118696613300025906Corn, Switchgrass And Miscanthus RhizosphereLGLVSVTWAAAVAAGLWLLRSELPGDLRRRKAAVYPSVAHGGSKEILGAGREP
Ga0207700_1027716533300025928Corn, Switchgrass And Miscanthus RhizosphereLALVSLTWAAATASGLWLLRSELPGDLRRRKGAVYPAVAQGEAKEILGAGR
Ga0207664_1134806333300025929Agricultural SoilAQLALVSITWAAAVAAGLWVLRSELPRDLRRRKGAVYPAVAQGESKEILGAGR
Ga0207664_1149713823300025929Agricultural SoilAAVAAGLWLLRSELPGDLRRRKAAVYPSVAHGESKEILGAGREP
Ga0207665_1012996433300025939Corn, Switchgrass And Miscanthus RhizosphereWAGGVAGGLWILRSTLLADLRRRKVTAYPHVAEQQAEEISGGVKP
Ga0207667_1081217313300025949Corn RhizosphereLAGLWLLRSELPRDLRRRKAAAYPVVAHDESKEILGAGR
Ga0257154_102110723300026467SoilLRLLKSQLPNELRPRKKIAYPAVAQREGKEIVDAGTQP
Ga0257154_107345523300026467SoilAAVAAGLWLLRSELPGDLRRRKRAAYPEVAHRESKEILGAGTQL
Ga0179587_1109289423300026557Vadose Zone SoilWLLRSQLPNDLRRRRKATAYPAVAQGESKEIMDAGTQP
Ga0208238_100974713300027072Forest SoilWLLKSQLPGDLRRRKQVAYPAVAQNETKEIMGAGTQP
Ga0209219_101502313300027565Forest SoilGLWLLRSRLPLDLRRHKATAYPGVAQGESTEIMRTGAQP
Ga0209167_1072216823300027867Surface SoilTAVGLWLLRSQLPNDLRRRKTAYPAVAEGESKEIMGAGTQP
Ga0209167_1073775523300027867Surface SoilAAAVAAGLWLLRSELPQDLRRKKGTAVYPSVAQGEAKEILGAGREA
Ga0209579_1055804623300027869Surface SoilTWAAAAALGLWLLKSQLPGDLRRRRQASYPAVAQGESKEIMSAGREP
Ga0209067_1020817033300027898WatershedsLWLLKSELPHDLRRRRTAAYPAVAQAESREIMGAGREP
Ga0209067_1035804513300027898WatershedsAAAAGLWLLKSELPRDLRRRRAAAYPAVAQAESKEILGAGREP
Ga0209168_1057092813300027986Surface SoilLWLLKSELPRDLRRRKQAAYPAVAEGESKEIMSAGR
Ga0265346_10292123300028012Plant LitterAAAVAAGLWLLRSDLPRALRRRKGAVYPAVAQGGPKKY
Ga0209526_1072099623300028047Forest SoilLLRSDLPGDLRRRKGAVYPAVAQGESKEILGAGTQP
Ga0302303_1032829713300028776PalsaGLWLLRSELPGDLRRRKATAYPGVAEGQGEEIMGSGTQP
Ga0308309_1036082813300028906SoilGLWLLKSQLPNDLRRRKATAYPAVAEGESKEILGSGTRP
Ga0311368_1070037413300029882PalsaAAAVAAGLWLLRSELPGDLRRRKRAAYPVVAQGGAKEILGAGREP
Ga0247271_10060393300029903SoilGLWLLRSELPGDLRRRKGAVYPAVAQSGSKEILEAGTQP
Ga0311341_1029776213300029908BogATALGLWLLRSQLPNDLRRRKATAYPAVAQGEGKEILAAGTQP
Ga0311339_1005728043300029999PalsaAAGLWLLRSELPGDLRRRKVTAYPGVAEGQSKEILGAGTQP
Ga0311344_1137387623300030020BogALGLWLLRSQLPRDLRRRKVTAYPAVAQGEGKEILAAGTQP
Ga0302179_1032904813300030058PalsaAAGLWLLRSELPGDLRRRKATAYPGVAEGQGEEIMGSGTQP
Ga0302183_1012951013300030509PalsaLRSQLPSDLRRRKATAYPAVAEGEGKEIMGAGVQP
Ga0307482_110379913300030730Hardwood Forest SoilLWLLRSQLPNDLRRRKTVAYPAVAEGESKEILGSGTQP
Ga0302325_1334443013300031234PalsaSAGLWLTRSQLPGDLRRRKRQAYPAVAQGEAAEILGAGTKP
Ga0302318_1040848613300031258BogALGLWLLRSQLPNDLRRRKATAYPAVAQGEGKEILAAGTQP
Ga0170818_10353525633300031474Forest SoilAGLWLLRSELPGDLRRRKGAGYPSVAQGQSKEILGAGTQP
Ga0302326_1009905243300031525PalsaWAAAVAAGLWLLRSELPGDLRRRKVTAYPGVAEGQSKEILGAGTQP
Ga0310686_10044481923300031708SoilLGLVSVTWLAAVAAGLWLLGSELPGDLRRRKGAVYPVVAQGQAKEISDAGRQP
Ga0310686_11278078123300031708SoilGLWLLKSQLPNDLRRPKVTAYPAVAEGEGKEILGAGTQP
Ga0307474_1104808823300031718Hardwood Forest SoilLRLLKSQLPNELRPRKGISYPAVAQSEGKEILDAGTQP
Ga0307475_1023082623300031754Hardwood Forest SoilVTWAAATAVGLWLLKSQLPNDLRRRKTAYPAVAEGESKEIMGAGTQP
Ga0307475_1144628913300031754Hardwood Forest SoilTAVGLWLLKSQLPNDLRRRKTAYPAVAEGESKEIMGAGTQP
Ga0307478_1006126453300031823Hardwood Forest SoilWGAATALGLVLLKSQLPNDLRRRKQSPFPAVAHGETKEILGAGTKP
Ga0307478_1062596733300031823Hardwood Forest SoilWGAATALGLVLLKSQLPNDLRRRKQSPFPAVAHGETKEILGAGTQP
Ga0307478_1180868613300031823Hardwood Forest SoilLLRSDLPRDLRRRKGAVYPSVAQGEGKEILSVGTQP
Ga0318520_1085765523300031897SoilALVSLTWLAAAAAGLWLLKSELPRDLRRRKQAAYPGVAEGESKEILGAGR
Ga0307479_1076949213300031962Hardwood Forest SoilGLWLLRSRLPLDLRRRKATAYPGVAQGESTEIIRTGAQP
Ga0311301_1293699723300032160Peatlands SoilWLLRSELPRDLRRRKGTVYPAVAQGESKEILAAGTQP
Ga0348332_1087567213300032515Plant LitterAAATAVGLWLLKSQLPNDLRRRKATAYPAVAEGESKEIMGAGTQP
Ga0348332_1460356823300032515Plant LitterLRSQLPNDLRRRKATAYPGIAEGESKEIMRAGTQP
Ga0335079_1009362913300032783SoilAAAVAAGLWLLRSELPGDLRRRRGAVYPVVAQGQSKEISDTGTEP
Ga0335070_1134395923300032829SoilTWAGAVAAGLWLLKSELPAELRQRRKAAYPAVAQAESKEILGSGTQP
Ga0310810_1072312313300033412SoilTWMAAAMAGLWLMRSELPRDLRRRKAAAYPAVAQDESREILGAGR
Ga0370515_0154882_844_9813300034163Untreated Peat SoilWAAATALGLWLLKSQLPNDLRRRKTAYPAVAEGESKEIMGAGTQP


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