| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027673 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114511 | Gp0116007 | Ga0209278 |
| Sample Name | Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 B green DNA (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 536921534 |
| Sequencing Scaffolds | 33 |
| Novel Protein Genes | 35 |
| Associated Families | 28 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Not Available | 10 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 5 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → unclassified Phyllobacteriaceae → Phyllobacteriaceae bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 2 |
| All Organisms → Viruses | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Milwaukee, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.023 | Long. (o) | -87.895 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000331 | Metagenome / Metatranscriptome | 1285 | Y |
| F001488 | Metagenome / Metatranscriptome | 686 | Y |
| F001506 | Metagenome / Metatranscriptome | 681 | Y |
| F012678 | Metagenome / Metatranscriptome | 278 | Y |
| F021307 | Metagenome / Metatranscriptome | 219 | Y |
| F021521 | Metagenome / Metatranscriptome | 218 | Y |
| F028939 | Metagenome / Metatranscriptome | 190 | Y |
| F029662 | Metagenome / Metatranscriptome | 187 | Y |
| F034767 | Metagenome / Metatranscriptome | 174 | Y |
| F035199 | Metagenome / Metatranscriptome | 172 | Y |
| F042355 | Metagenome / Metatranscriptome | 158 | Y |
| F045749 | Metagenome / Metatranscriptome | 152 | Y |
| F051119 | Metagenome / Metatranscriptome | 144 | N |
| F057918 | Metagenome / Metatranscriptome | 135 | Y |
| F058681 | Metagenome | 134 | Y |
| F061006 | Metagenome / Metatranscriptome | 132 | Y |
| F063250 | Metagenome / Metatranscriptome | 129 | N |
| F065810 | Metagenome / Metatranscriptome | 127 | Y |
| F075465 | Metagenome / Metatranscriptome | 119 | Y |
| F075867 | Metagenome / Metatranscriptome | 118 | N |
| F079646 | Metagenome / Metatranscriptome | 115 | Y |
| F085200 | Metagenome / Metatranscriptome | 111 | N |
| F087278 | Metagenome / Metatranscriptome | 110 | Y |
| F090323 | Metagenome | 108 | N |
| F093756 | Metagenome / Metatranscriptome | 106 | N |
| F096902 | Metagenome / Metatranscriptome | 104 | Y |
| F098921 | Metagenome / Metatranscriptome | 103 | N |
| F099163 | Metagenome / Metatranscriptome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209278_1000097 | All Organisms → cellular organisms → Eukaryota | 134756 | Open in IMG/M |
| Ga0209278_1000177 | Not Available | 72661 | Open in IMG/M |
| Ga0209278_1000344 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 41037 | Open in IMG/M |
| Ga0209278_1000358 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 39917 | Open in IMG/M |
| Ga0209278_1000618 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 26007 | Open in IMG/M |
| Ga0209278_1007654 | All Organisms → cellular organisms → Bacteria | 5055 | Open in IMG/M |
| Ga0209278_1010714 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae | 4111 | Open in IMG/M |
| Ga0209278_1011316 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix | 3972 | Open in IMG/M |
| Ga0209278_1018547 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya | 2903 | Open in IMG/M |
| Ga0209278_1044285 | Not Available | 1653 | Open in IMG/M |
| Ga0209278_1048317 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1561 | Open in IMG/M |
| Ga0209278_1065296 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → unclassified Phyllobacteriaceae → Phyllobacteriaceae bacterium | 1276 | Open in IMG/M |
| Ga0209278_1083076 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 1086 | Open in IMG/M |
| Ga0209278_1086797 | All Organisms → Viruses | 1055 | Open in IMG/M |
| Ga0209278_1088249 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1043 | Open in IMG/M |
| Ga0209278_1093798 | Not Available | 1001 | Open in IMG/M |
| Ga0209278_1108879 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana | 907 | Open in IMG/M |
| Ga0209278_1125114 | All Organisms → cellular organisms → Bacteria | 825 | Open in IMG/M |
| Ga0209278_1126375 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 819 | Open in IMG/M |
| Ga0209278_1137450 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris | 773 | Open in IMG/M |
| Ga0209278_1156746 | Not Available | 706 | Open in IMG/M |
| Ga0209278_1157874 | Not Available | 703 | Open in IMG/M |
| Ga0209278_1180693 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae | 641 | Open in IMG/M |
| Ga0209278_1182608 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 636 | Open in IMG/M |
| Ga0209278_1189065 | Not Available | 621 | Open in IMG/M |
| Ga0209278_1200729 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 596 | Open in IMG/M |
| Ga0209278_1216176 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 565 | Open in IMG/M |
| Ga0209278_1222029 | Not Available | 555 | Open in IMG/M |
| Ga0209278_1228185 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora | 544 | Open in IMG/M |
| Ga0209278_1228224 | Not Available | 544 | Open in IMG/M |
| Ga0209278_1241491 | All Organisms → cellular organisms → Eukaryota → Sar | 523 | Open in IMG/M |
| Ga0209278_1247254 | Not Available | 514 | Open in IMG/M |
| Ga0209278_1254036 | Not Available | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209278_1000097 | Ga0209278_1000097114 | F034767 | MIFGSKIFGATYDILRGVNATVWGGVEGAEKVGKIVKTGLSGADVVIGTSHALEDFGCNDVVCGSLDVIGSVSSAVGLVIGNIPRTKHLTLITGSITVGCRSVRYYCKRYGTFWGCTVAAGQGIKEAIKFTIKD |
| Ga0209278_1000177 | Ga0209278_100017766 | F001506 | MNRILYESRCRCKEKISITPKRKLSARNEGKGLPYPHEMMSKTFQIRYDKKLSSLAKFILNSFQNKYIYYAIDDILYLLKSNPVERESLLGLLYSPVLSLHNNLCINFFDIWIQEVYLNERSKVNKFLSSQSQNLEPFTEITIKFLYKTRVPVKKSDSLW |
| Ga0209278_1000344 | Ga0209278_100034434 | F001506 | MNRILYEIRCKCNEEISITKKRKSTNRSEGKPLLYPNPTELTSKTFQIKYEKPLSSVAKFLLNSFQNKYLYYAIDDLLYLLNSNVSERDNLLALLYSPVLSLQNNLSINFFDIWIQEIYINEIVNTNKFLNNNTQNFESVNYIIIKLLYRTKIPVKKQESLW |
| Ga0209278_1000358 | Ga0209278_100035831 | F001488 | MARLELTLNFPKHFHIKTFNVKSEPMLSPLAKSILQSVQFKHFYYVRDDIDYRLRSHPMERDFLLQALFSIAISLQNNLSINFFDMWIYEIYISKVSNPNKFLKKSSQNKELDEYITIKLAYGINTSQEKKIIF |
| Ga0209278_1000618 | Ga0209278_100061812 | F001506 | MNRILYENRCKCNEEFSITKKRKSNSRSEGKPLQYPKPSELTSKTFRIEYNEKLSLAAKFILNSFQNKYIYYAIDDILYSFRSNPIERDNLLAVLYSPILSLQNNFLVNFFDIWIRDIYIDEISKTNKFLKKDSENLYKVTYITIKLFYKTRVPIKKQESLW |
| Ga0209278_1007654 | Ga0209278_10076543 | F079646 | MWSPAVAVLATVLGVGLHVASPQTGKWFATVNQLRNGGSADLTIESRNDKQSRARLSFRNVSRDMRIAWDIVAGSCNDQGAPIAPQAAFTQAQTQMDGGGSVTATIPKLESGKRYYIRVFDPQVAPTDQNVWGCANISEKP |
| Ga0209278_1010714 | Ga0209278_10107144 | F021521 | VAGYSHRTAQPPILAVFLPWGGSAGAGRIRPADAKIRE |
| Ga0209278_1011316 | Ga0209278_10113167 | F034767 | MVLGSKLFVVTYDILRGVNNTFWGGAEGIEKATRIVKTGLSGADAVIGVSHALEDFQCNDVVCGSLDVIGSVSSTVGIVLGNIPATKHLTFITGSVTVGCRTIRYYCKKYGTFWGCTVAAGQGVKEVLKFTVKP |
| Ga0209278_1018547 | Ga0209278_10185476 | F001506 | MNRILYEIRCKCNEEISITKKRKSTNRSEGKPLLYPNPTELTSKTFQIKYEKPLSSVAKFLLNSFQNKYLYYAIDDLLYSLNSNLSERDNLLALLYSPVLSLQNNLSINFFDIWIQEIYIHQTLKTNKFLKHNSPTFESSNYIIIKLLYRTKIPVKKQESLW |
| Ga0209278_1033588 | Ga0209278_10335885 | F058681 | VTPNVRGNLPAEARSVSLVRDDASMAADQAYAACRSGS |
| Ga0209278_1044285 | Ga0209278_10442853 | F099163 | MTLYTSAKPGTTLTLKPGAWRTVAVATIPAGAQVHSMLYANVSGRATAGASVVQLDVRALRDGGTDETALQTYTAAVRPDGSWRCRITATWFGGDPGSSMHWQIMPTLNISTATVSGTRYAKGMTN |
| Ga0209278_1047467 | Ga0209278_10474671 | F058681 | VTPNVRAKLPAEAGAVSLVRDDAPSAADQAYSACR |
| Ga0209278_1048317 | Ga0209278_10483173 | F065810 | NEITSKTFQIQYQNKLSVTSRLILNSFQNKYIYYAIDDILYSLKCSSFERDNLLAVLYSPILSLQNNFSVNFFDIWIRQVYIEEVSKPNKFLKANFETSDQITNITIQFFYKTRIPVKKQESLW |
| Ga0209278_1065296 | Ga0209278_10652962 | F093756 | VRHTPAIRLRDCQPGQAVHLRGPKGYPFVSVDGHVRLRYGERGEHYGKLWLSKEDHAAGKPWAVMACLGSEVRHA |
| Ga0209278_1083076 | Ga0209278_10830762 | F085200 | MKKDEDEKPQVAEGARFNGKQGFKKKHNNKQKGQEQTNTASEFFKGFGFSMGPHGAEMYQKTVHKVGLYASMQFKNGSDTTICLLEEKLVKPEIPVLEEEHTAHEKRVWEYRMNDVLKTEKQLEGNLRNLFMVLMSLCDSTIKNKIENTSEYPKLMKRLDTLG |
| Ga0209278_1086797 | Ga0209278_10867972 | F090323 | MSLETEINQLTKSINELNANFERFFNSQSAPTPPQQIEQTPEPEQETFLPEVAKEAPNMTRESLQAFCLEAVKRNVANRDIIKSIMLNNFEARKTGDLADNQINLCYSMIAEATKD |
| Ga0209278_1088249 | Ga0209278_10882494 | F012678 | MLNQHSLEEIADIHNLLVDIKKEYEEGIKPILMKNTPSRFRNPHTVPKLKKIQINRGLGL |
| Ga0209278_1093798 | Ga0209278_10937982 | F051119 | MTIKEAFEQFDALRVANALGLEYDTVCKWRDRDQIPAYWRVKFVNLMNHHGVSISLHDLAGWIK |
| Ga0209278_1108879 | Ga0209278_11088791 | F000331 | MLRTAELDMANTVVPSDIDAFLTDAAWAIRSTYHTVLKASPGAAIFGRDMLFDIPSLADWNKIGDHRQHLTDLNTIRENRSRRDWDYTVGGKVLLRKDGILCKSESRYECDPWTITSVHTNGTIRVQRGTKSER |
| Ga0209278_1125114 | Ga0209278_11251143 | F021307 | MNRILYENRCRCNEEISITKKKKVSTRSEGKPLQYPKSNEITSKTFQIQYQNKLSVTSRLILNSFQNKYIYYAIDDILYSLKCSSFERDNL |
| Ga0209278_1126375 | Ga0209278_11263751 | F045749 | AESEKHAGAIKTFLLKYKISDDFKASGRAPDTKSRQAMIQATISPEQCSVEDLINKHDCAVVNGRILDVTWLAKLCEPDGDMLPPTRTLGHILSDMGYSQIDGRRVYIKKTNTQHYVWFKHSPKNDSQTVKKEVILFFKGDFDEIPF |
| Ga0209278_1137450 | Ga0209278_11374501 | F075465 | AILDNEITEGNYKQNNEVPIEMLDSEKMQYSNDWRTYRERNALLTKHRGQAFSLILGQCTQLLQDRMKQDTDWNMTSTSYNPLELYRLIEKTTLAQTEDQYPFATVYDQELNFYSFRQETMSNPQWYEKFNTKVDVGSAIGVTRQHKVLLEYVAQENHTLTFAALSAEQKQAVREDAEERYISYAFLRQSGAQHGNLKVDLRNDFTTGSNRYPKTRQQTLHLLDKYSKTVVVPKTTSSEGSSFAQKGGRGGRGSRGR |
| Ga0209278_1156746 | Ga0209278_11567462 | F096902 | MSGGSLDYVCYRLDDAVDSIEKRATTPLHKAFAAHLRDISKALHDLEWVFSGDYCEGQEVESLHKVVNKEMELEAATNDARTALKQLQDVLGLDA |
| Ga0209278_1157874 | Ga0209278_11578741 | F075867 | DNEGFKTLHGRIGQLAQNPRYWSVTVRVTTENEDTTGRIVDSFTFKTAERCILSDLRERIKSEVLDKDDYAPVCVECLVTARVMTEGGV |
| Ga0209278_1180693 | Ga0209278_11806931 | F098921 | PDPALTAALKVMLADACWRCSDGDGATCDPCLSELVAAAERDAEARTVLTHLRGMFDPMTGRPAGGGW |
| Ga0209278_1182608 | Ga0209278_11826081 | F087278 | SLPIDRRTPEQKARDVEDILNWKRNPKEHDSPKTDSFKKIDQLLPEKPGQSPKERANDIDNTLTWLRNRGVDEPQFGPEEPFKKTKNLPMPDTRSPDQKAKDLDDIMNWIRNPKEHDSPKTEPFKKIDQLLPEKPGQSPEDRAKDIDNALTWVRNRGVDQPSMEPTSPFDKLNSLPIDRRTPEQKARDVEDILNWKRNPKEHDSPKTDSFKK |
| Ga0209278_1189065 | Ga0209278_11890651 | F061006 | TWLRNFGVGEPQFVPEEPFKITKDVGLPDHRSPEQKANDLDEILSWVRNPRENDRPETESFKMIDQLLPQKPQQSPEDRAHDIDKVLTWVRNFSVEEPVFEPMLPMDHLRSISIDRRSPYEKARDVEAILHWKRNPNEEEGPETEPFKKMDQLLPKKPGQSPEERANDIDNTLTWLRNFGVGEPQFVPEEPFKITKDVGLPDHRSP |
| Ga0209278_1200729 | Ga0209278_12007291 | F075867 | MKTRDAALKPSKKHYLQYDAATFEHEGFKTLNGRVSQLALEPRFWSISVNVRTENYDGTGEVKDHFNFKTSERCKLSDLRDQVKKEVLDKDDYLPVCT |
| Ga0209278_1216176 | Ga0209278_12161761 | F028939 | MKINSAKIRNYKLFKYNLLKLQIYSNEPVGDFSAISNYMLEQIEAYLKQGLKIIFEYHRRQFKILFIGFPVVSKLKQMKLIHFTNHNFISQKS |
| Ga0209278_1222029 | Ga0209278_12220291 | F063250 | MYEDTDYDALERNVKYIPWKGKKEEWYIWHKTFLVRAMTRGYHGILIGLESVPSDEVAKTFAGLTEMTSAQKKKFNNYKLNIRAYADLLQCCTQDIISFGIVDAAKDKELSNGNSKL |
| Ga0209278_1228185 | Ga0209278_12281851 | F057918 | MPKLSKKAIYIKEYEAVVASRVRKACIRFYLDDEDSFEDEIDECMLRELAVLKESRYIFRGLYRQWETTWERVLYDCSYLTDDEFLSHFRMDRSCVMQLNSLVEDDQEFRSVSGKKGKRSSILHVMVLLKFLGSYGNDAALAKLGLMLGISKGA |
| Ga0209278_1228224 | Ga0209278_12282241 | F035199 | DAILRQAMCACIFHNLLIDHPVPPDWLDETLQELEPDDELNHSVEQRGGDTRRNQVFAHMLEGR |
| Ga0209278_1241491 | Ga0209278_12414912 | F021307 | MNRILYEIRCKCNEEISITKKRKSTNRSEGKPLLYPNPTELTSKTFQIKYEKPLSSVAKFLLNSFQNKYLYYAIDDLLYLLN |
| Ga0209278_1247254 | Ga0209278_12472542 | F042355 | MTSDLKRINKKPNSRRKQNTQEPKLVERLIKISRVSK |
| Ga0209278_1254036 | Ga0209278_12540361 | F029662 | MYEDTDYDALERNVKYIPWKGKKEEWYTWHKTFLVRAMTRGYHGILVGLESVPSDEDAKTFAGLTEMTTAQKKKFNNYKLNIRAYADLLQCCTQDIISFGIVDAAKDKELSNGNSKLAWKRLSEKFAGRNNAEKMKLIKQLNESRMGKREDPD |
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