3300027640: Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027640
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0103000 | Gp0061308 | Ga0209347
• Sample Name: Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 588151591
• Sequencing Scaffolds: 44
• Novel Protein Genes: 45
• Associated Families: 39

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	23
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9
All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Thermoanaerobaculaceae → Thermoanaerobaculum → Thermoanaerobaculum aquaticum	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Clay → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → borehole → clay soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Mt. Terri, Switzerland
• Coordinates
  • Lat. (^o): 47.379
  • Long. (^o): 7.1648
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F001605	Metagenome / Metatranscriptome	664	Y
F001750	Metagenome / Metatranscriptome	642	Y
F001931	Metagenome / Metatranscriptome	615	Y
F002064	Metagenome	597	Y
F002279	Metagenome	575	Y
F002324	Metagenome	571	Y
F002338	Metagenome / Metatranscriptome	569	Y
F002548	Metagenome / Metatranscriptome	549	Y
F004903	Metagenome / Metatranscriptome	419	Y
F006090	Metagenome	382	Y
F006775	Metagenome	365	Y
F011178	Metagenome / Metatranscriptome	294	Y
F012395	Metagenome / Metatranscriptome	281	Y
F013826	Metagenome / Metatranscriptome	268	Y
F013963	Metagenome / Metatranscriptome	267	Y
F020065	Metagenome	226	Y
F021852	Metagenome / Metatranscriptome	217	Y
F032404	Metagenome / Metatranscriptome	180	Y
F034623	Metagenome / Metatranscriptome	174	Y
F039554	Metagenome	163	Y
F039817	Metagenome	163	Y
F041974	Metagenome / Metatranscriptome	159	Y
F043603	Metagenome	156	Y
F046478	Metagenome / Metatranscriptome	151	N
F048519	Metagenome	148	Y
F048553	Metagenome	148	Y
F052044	Metagenome / Metatranscriptome	143	N
F057405	Metagenome	136	Y
F065095	Metagenome / Metatranscriptome	128	Y
F066113	Metagenome / Metatranscriptome	127	Y
F067094	Metagenome	126	Y
F068101	Metagenome / Metatranscriptome	125	Y
F076426	Metagenome	118	Y
F081525	Metagenome	114	Y
F087671	Metagenome	110	Y
F088355	Metagenome / Metatranscriptome	109	Y
F097999	Metagenome	104	Y
F105419	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209347_1001086	All Organisms → cellular organisms → Bacteria	50484
Ga0209347_1001309	All Organisms → cellular organisms → Bacteria	42474
Ga0209347_1001436	All Organisms → cellular organisms → Bacteria	38900
Ga0209347_1003097	All Organisms → cellular organisms → Bacteria	20238
Ga0209347_1003861	All Organisms → cellular organisms → Bacteria	16655
Ga0209347_1005836	All Organisms → cellular organisms → Bacteria	11375
Ga0209347_1005909	All Organisms → cellular organisms → Bacteria	11259
Ga0209347_1006131	All Organisms → cellular organisms → Bacteria	10910
Ga0209347_1006573	All Organisms → cellular organisms → Bacteria	10216
Ga0209347_1006583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10199
Ga0209347_1007355	All Organisms → cellular organisms → Bacteria	9214
Ga0209347_1008511	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	8074
Ga0209347_1008596	All Organisms → cellular organisms → Bacteria → Proteobacteria	7999
Ga0209347_1009051	All Organisms → cellular organisms → Bacteria → Proteobacteria	7610
Ga0209347_1009655	All Organisms → cellular organisms → Bacteria	7168
Ga0209347_1009676	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7151
Ga0209347_1009980	All Organisms → cellular organisms → Bacteria	6937
Ga0209347_1010093	All Organisms → cellular organisms → Bacteria	6860
Ga0209347_1010238	All Organisms → cellular organisms → Bacteria	6767
Ga0209347_1010796	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Thermoanaerobaculaceae → Thermoanaerobaculum → Thermoanaerobaculum aquaticum	6427
Ga0209347_1012245	All Organisms → cellular organisms → Bacteria	5706
Ga0209347_1012938	All Organisms → cellular organisms → Bacteria → Proteobacteria	5420
Ga0209347_1013543	All Organisms → cellular organisms → Bacteria	5190
Ga0209347_1013968	All Organisms → cellular organisms → Bacteria	5031
Ga0209347_1017064	All Organisms → cellular organisms → Bacteria → Proteobacteria	4141
Ga0209347_1018863	All Organisms → cellular organisms → Bacteria	3769
Ga0209347_1020147	All Organisms → cellular organisms → Bacteria	3529
Ga0209347_1020702	All Organisms → cellular organisms → Bacteria	3437
Ga0209347_1021492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3322
Ga0209347_1022476	All Organisms → cellular organisms → Bacteria	3187
Ga0209347_1023228	All Organisms → cellular organisms → Bacteria	3084
Ga0209347_1042231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1783
Ga0209347_1043859	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1726
Ga0209347_1044288	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1710
Ga0209347_1053080	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1459
Ga0209347_1053795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1441
Ga0209347_1055253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1408
Ga0209347_1066164	All Organisms → cellular organisms → Bacteria	1205
Ga0209347_1076875	All Organisms → Viruses → Predicted Viral	1061
Ga0209347_1120097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	733
Ga0209347_1122697	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	719
Ga0209347_1135220	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664
Ga0209347_1137761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	654
Ga0209347_1173005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	544

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209347_1001086	Ga0209347_10010868	F002279	MAAQPVTPPRPQYDWAKLVGHSLKQNGPWATWEKLVEARRAYPEDMLLRGYAEIVRNTIVRDLLAGPKGLQAAPKLTPDFLADFDRFNLTAQEGYLISLIDGRITLEMLLKLTPFDNFTTLFNMAKLEHQKAITIPS
Ga0209347_1001309	Ga0209347_100130916	F001750	MMTKIEVEISGELSRQIERIVRDGWFPSEEALAQEALQQFVEAKSFLGDSPRMLKRFAADALNESKPDTALKFVDRGLSLLATQEHPDLTLYQRLVELRVQILMVLGRGSEALEALEDARELLPNNPAITRWIDRVRKTGLPATVGD
Ga0209347_1001436	Ga0209347_10014368	F001519	MSLVNAVCAEISVYQGIGECTGTLVERRAVRGKAGLCKSMRDLATKSRVLGDGYYYIPVDLWPEEAGPVVINKMDWTVIGSLSRSRSERKRTRRASAGDD
Ga0209347_1003097	Ga0209347_100309715	F002548	MPKFEYESQAETGPAFIERRRLRRVRMIVELTLNLISSDRTTSYREARSLVECARKAILELYPGFESHYELMVRPHFCRVLHERWPEDEIRYADPHEMVN
Ga0209347_1003861	Ga0209347_10038618	F020065	VAIFAVMKKSQIQQIKEGRAMHEKTWSGRLQPFGPKVQLNGPNAVNLTTVPSSAKEKYNGGIDPKPETTGAK
Ga0209347_1005836	Ga0209347_10058363	F043603	MNNIAQTRSTRFESILSATYLLPGMLAVNTAALMALNHLGGIPQWVKAAAALFLAF
Ga0209347_1005909	Ga0209347_10059094	F068101	MSERFPDEHERAAAGLDFDTSALFENAAEWGTRMIENGPEALLDEIEEMLPEAWREQIQTFPIVAVALGFGVGVFLGMKKSHEVIAAGTSLVSAAAMANVNQVMDKVKEGR
Ga0209347_1006131	Ga0209347_10061311	F006775	MQLGKDSCACGHIIDQHDGGRGGPCSFCACSAGEPPTAFQVGLIHSLHEVSVMLARLVKEVQGAKGG
Ga0209347_1006573	Ga0209347_100657311	F001519	MTLVNSLCAEISVYQGVGETTGVLVERSAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPVDLWPKANEPIVVHKHDWTVISSIPRTTRTSKKGAVAK
Ga0209347_1006583	Ga0209347_10065838	F052044	MADADRLGKIASIGQDLITTQLTMATQTPSQALEGTWVLGYCIGIFDALAQRADLDDAEGFSLITLGFLGLFADPADPEAAAFIRHSLDRQDSPRFQEGATAGGTDVFDWVADRTKAPTALFEHLTR
Ga0209347_1007355	Ga0209347_10073558	F048519	GTAPSVRGPVYRGLICEKVYDRLENFVRHPNEPTVGHAELRWHYANPTPLYELFETKINKPLDKPFATHVSFWFEKNQWKFSVNVRKAD
Ga0209347_1008511	Ga0209347_10085119	F041974	MDSMFWGLFGLFAAFVVLLAVVAVLRRRVGGGFGPTERSDGSMTVSPTGYSEKHEGHGKTIGPTDNNAAKY
Ga0209347_1008596	Ga0209347_10085965	F001931	MTNEALQQQRLDILSGVVSTLLSELKGGSGDKDRRRQVEEWMRTLAEKYPEFEIEAGLRDYYLAEAQRLRGEFDKSSDLTERLGLGRSIESFLDRAAEYDRRITDR
Ga0209347_1009051	Ga0209347_10090514	F087671	MMKSCDEHKHEHRDLPCPWPDCPNSEGADDAFEVSRHTGAGKMTRAEGHFVKAPPPRKFQRAKWECEKCGAIGWTWMEEGAERRMDRCPHRKPGTVVPRR
Ga0209347_1009655	Ga0209347_10096555	F002279	MATPIRIVANMSSTPTSPPKQDWARLVGESVKQHGVWHTYGRLLEARRVYPDDLSLRGYVEIVRNTIVRDFLGHPRGMQAVPKLSADFLSHFDRFNLNAQEGYLVSLIDGRLSIQKLIILSPFDPFTTIFILAKLQQEKAITVP
Ga0209347_1009676	Ga0209347_10096762	F001605	MSEIPPRQALPEAQSLAQLPLKILEEVIRQLRSTRNDIIRFAVWNIRNVTDDDFNKIDDQKLLGYFRQDLLETRFLSKGRRIDLVQLWNWFDNEMSGVEPLLVDGQEVFLNIQDKDLEKVRKRIAEIDAFLPALRGDDLEAFKRVKYKLRRTVMRLTYDLHHLFKRLEKYRKNYFVSGAGAPRADRIPLEAVVDIPEPPMPEEEHDEVEA
Ga0209347_1009980	Ga0209347_10099801	F021852	MTAFEDRIRRMAREAIVELGRDESEIADVIEPPGADYCVVTFTDPEHKPIEIPKPLGAGESQELDEIRRALQYRFGS
Ga0209347_1010093	Ga0209347_10100933	F006090	MSLLIERKISLPTPRLQGKEVLTGPDPAVCKVKGVMFGGRRQFLLDTLGQEGFTAFTEKLSPETRSYVRTPLASSWCEFSSLIELDRAIHDHLDADALLKMGAASAELGVGRIYRFLDSTELTQFFEKSALFHDQYQKFGKVRFEKTTDGGRMIYSDYPCYSPIFCASAIGYFMEAILRHGGTSPSVTETKCQCRGDATCTYEMKWA
Ga0209347_1010238	Ga0209347_10102384	F002064	MSAVAAAPGTGLTGQQLGLIFQYTVEAYKVFQKFAENVPNPVARTMFKQFAVDEREARDLLEIKEAAIEGSKVRVTLGADMIFNELLEGEMSFRETAEFLIARERTMQRKVRELIGSAGAGDRNLLLHVESLKRSHIVELERELELIKHDRDWWKREDAEWRIVHGSPE
Ga0209347_1010796	Ga0209347_10107966	F057405	MEPQGEPAWYERETPADVIRRIKRTAFVAAGVFAVFSAVYGGFRGFLGLTCSAAVTMISFLWLEEIVDVLLQPAAHLHARRLTLRTLARFALLGVALTVTIIIARFNAVSVLLGFSIIVVGICGEALYSLYRSFAG
Ga0209347_1012245	Ga0209347_10122453	F081525	MRTALFASLVALTVAGSASAACMNKFVARSERPHQVVTLLTGKLTFQEAQALAAAIQKKQAPPVQWVDANGRTISSQFGELKVVRPMPVGCDGRASGVVVIATFPNAVPPVRKMMVKLGDDNVVEFEEQQ
Ga0209347_1012938	Ga0209347_10129382	F002324	MGEVRLFQICYEGELTVDVSHVMRRLGAEPNFDQSWQVFLPEGRHAAPLVRYLRTSLAPEARLLVACTQFTTARDFLLVKHSLTPDADYSELHGALERLGPVIPLPFESTFVIQTNDRTDVQTLGTALGELCPDESLMVTGVSHDWAYSDAGLSRMCVAGASDVELQFRGF
Ga0209347_1013543	Ga0209347_10135432	F004903	VSRYLQKISLKPYSDAEIWTGWELENRTGEVEGLVLADGMSDEELRSQYGVTEFQKIPAEYLEIGEFRPRQE
Ga0209347_1013968	Ga0209347_10139682	F067094	MSYTNWLRRQVQKLEAEIGRTSIFDTAAPPTARDLQELRSKVVIHTYLKQQLLRRETITPVADDEEFDTQEFLIRRTG
Ga0209347_1017064	Ga0209347_10170644	F011178	MSASTAVMHITIKDRGTHLREKLRVRLDQAAELRCEQHGEPVTAVTIHARENGWFDARWTTCCPDLEQRAVAIVKDRC
Ga0209347_1018863	Ga0209347_10188635	F065095	MAGTEQKEVIERSIVRARDGVGDRIDELDRHLRTNLDPKTIAKTYAPQMIAGGAVLGVIVGFGLPKVFRKLVTWGVPLAIVAMTIKNARERDELEGLS
Ga0209347_1020147	Ga0209347_10201473	F039817	MHEPTPRQLPERTGKHLCVQCLASISLDEYLRNDHICDECAAKDEYPLASTPDEKPAKKR
Ga0209347_1020702	Ga0209347_10207022	F066113	VLLQTGSEGWQVYQNMGPEFPLRIITDDGECQVVDTPEALLESLDSIDSTDPANRVWVRDVLDRTVRLRMVGGVVEVLELWR
Ga0209347_1021492	Ga0209347_10214923	F012395	MRYDWVYILATIIFVSIVVTMVLAVASYFAYKVREARRPKTAGELRREGQVKVFFVPYRP
Ga0209347_1022476	Ga0209347_10224761	F001750	MAKVTADIPSELHRQIERIVRDGWYPDEESVVREAIAHFVDSKTFLGDSPRMLHRFAADALNDSKPDVALKFVSRGISLLAHQKMTDFALYQALAELRVQTLLVLERQPEALAAAEEAREILPNNPVIARWIEKLSVKRG
Ga0209347_1023228	Ga0209347_10232284	F013826	MAVCWRCPRCNEVSCEEDVNAQGHPLACDHCERPFLPQQTICVICDAPNPWARRDSLHYWCRECGNTQTFYGYTATA
Ga0209347_1042231	Ga0209347_10422313	F097999	MENCSYCGTPFPRTRKTRKYCTNRCRTNACLDKKPRLKAADLEALHGVLHAEFASLEEMRERLRLILAPEMPPIPLVDGRAAIPRLD
Ga0209347_1043859	Ga0209347_10438592	F076426	EYLLNYRRDRHLVRSETFSELAELERRMTTIEEIDFFEIGARKPYKLKVRVKADLMRGWLMYVIPWEVETPWRETRVRVAER
Ga0209347_1044288	Ga0209347_10442882	F013963	MNYDLAIMALEGLARAPLSVRNDEGECTLEGSPAAFKELARLCLLLGGVQNAEDAFELTPGVHVTADSPAVRLQLRVE
Ga0209347_1053080	Ga0209347_10530802	F001750	DGWFPSEEALAQEALQQFVEAKSFLGDSPRMLKRFAADALNESKPDTALKFVDRGLSLLATQEHPDLNLYQRLIELRVQILMVLGRGSEALEALEDARELLPNNPAITRWIDRVRKTGLPATVGD
Ga0209347_1053795	Ga0209347_10537953	F002338	MQELKAEKPIESPAGSDPVLRLMDRLADEGFTTEQGPEWWDEYGEIIYRRAEKLPITSGETIFIFTRIPDLNERILRQTSDAVVQTYRAQTIGQKALSVMQSTTVYHCLVCTTDRPHNPSLDEYISRVGGATFIPVVIVPGINEVIYPNLEEKVGVLKPRIEYLQYLLGERRETVDMHKPTIQAMWVTAAVLLLLLVAVIFSFAM
Ga0209347_1055253	Ga0209347_10552532	F032404	MKLEGDLHDIDIIRHLLELAESRFTGAIRFENDGVIKILYLKDGDVLSASTNDRADSVDEILLRAGKVNRDHIRQALGKRKDNETLGDALLALGFIAKK
Ga0209347_1066164	Ga0209347_10661641	F048553	VPIRFTIEERHLTDGKGRPVASQEDVEFHTLDADTVDDAVRLFVRKDEGELIGDVLKFPGFQAIATVRKPNGVFTLQFSPASRQFK
Ga0209347_1076875	Ga0209347_10768752	F034623	ATERLLPHVHIKRYNVPIEIKLDGRRRGSLDHSRKANREANEITLQYKSRQEILLDEELAEEKLVQLLAVIRQLDQTPSGTAELRRRRKLFGVCERIEGETSGQFYARLRHWLDRDIPQRKSPLHAPRQTGD
Ga0209347_1120097	Ga0209347_11200972	F088355	MKNLTTKLNIFAGQKGQLVVAILTIALFVLAAGAPNATIGIGR
Ga0209347_1120097	Ga0209347_11200973	F088355	MKNITTKLNVFAGQKGQLVVAILTIALFVLAAGAPNATIGIGR
Ga0209347_1122697	Ga0209347_11226971	F105419	GCEVTETLAPGASEGEVIMKHGAPDNIVYLGTPYFNPTTGERGEVDKVLYEYRIGGGTTLLGQLFADDRFHNIAYLIEGGRVMGGGYVGEGSGSIILGNDMGVISTPLGTLDLRFGGFLHPKARAGYGGDGTPSGDVGADVPSSRN
Ga0209347_1135220	Ga0209347_11352202	F001519	MSLVNAVCAEISVYQGIGETTGTLVERRAVRGKAGLCKSMRDLATKSRVLGDGYYYLPVDLWPGEAGPVVINKMDWTVIGSLSRSRGDRKRTRRPSAGDD
Ga0209347_1137761	Ga0209347_11377611	F046478	MLHQPTYAPVPMLAADVNCFWALEQDQESYNREVHLPDAYVEVIINVGAPLLLESDYGLLELPRAFVNPLQNKPLRIRAAGFCQMISMQLYPWAVKPILNMDADPSTVHVI
Ga0209347_1173005	Ga0209347_11730051	F039554	MRGHVRKRGTPGSWEYIVDIGEAAAQRCRKCNRRFWIERRPKDVCPVCGSTLKETEERRRQTKAGFATKKECLAEMNKLLVAVEQHSYRTPTKATVRE