NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027465

3300027465: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-A (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027465 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0095510 | Gp0091526 | Ga0207626
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-A (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size30848037
Sequencing Scaffolds44
Novel Protein Genes46
Associated Families46

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium13
Not Available10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria11
All Organisms → cellular organisms → Bacteria → Terrabacteria group3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_91
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeagricultural fieldagricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001160Metagenome / Metatranscriptome762Y
F002206Metagenome / Metatranscriptome584Y
F002375Metagenome / Metatranscriptome566Y
F002575Metagenome / Metatranscriptome547Y
F005404Metagenome / Metatranscriptome402Y
F005968Metagenome / Metatranscriptome385Y
F008918Metagenome / Metatranscriptome326Y
F010168Metagenome / Metatranscriptome307Y
F013046Metagenome / Metatranscriptome275Y
F013555Metagenome / Metatranscriptome270Y
F015774Metagenome / Metatranscriptome252Y
F016218Metagenome / Metatranscriptome249Y
F017030Metagenome243N
F017112Metagenome / Metatranscriptome242Y
F017623Metagenome / Metatranscriptome239Y
F025844Metagenome / Metatranscriptome200Y
F025886Metagenome / Metatranscriptome200Y
F028017Metagenome / Metatranscriptome193Y
F031917Metagenome / Metatranscriptome181Y
F032015Metagenome / Metatranscriptome181Y
F034093Metagenome175Y
F040280Metagenome / Metatranscriptome162Y
F040930Metagenome161N
F041998Metagenome / Metatranscriptome159Y
F043382Metagenome / Metatranscriptome156Y
F045004Metagenome / Metatranscriptome153Y
F045447Metagenome / Metatranscriptome153Y
F047757Metagenome / Metatranscriptome149Y
F047941Metagenome / Metatranscriptome149Y
F051849Metagenome143Y
F057755Metagenome / Metatranscriptome136Y
F058060Metagenome / Metatranscriptome135N
F059436Metagenome / Metatranscriptome134N
F062656Metagenome / Metatranscriptome130Y
F064009Metagenome / Metatranscriptome129Y
F064969Metagenome128Y
F065025Metagenome / Metatranscriptome128Y
F066993Metagenome / Metatranscriptome126Y
F070430Metagenome / Metatranscriptome123Y
F072777Metagenome121Y
F077503Metagenome / Metatranscriptome117Y
F095960Metagenome / Metatranscriptome105Y
F098849Metagenome103N
F099511Metagenome / Metatranscriptome103Y
F100918Metagenome / Metatranscriptome102N
F103538Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207626_100038All Organisms → cellular organisms → Bacteria1737Open in IMG/M
Ga0207626_100464All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium975Open in IMG/M
Ga0207626_100623Not Available901Open in IMG/M
Ga0207626_100666All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria885Open in IMG/M
Ga0207626_100871Not Available825Open in IMG/M
Ga0207626_101187All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria766Open in IMG/M
Ga0207626_101194All Organisms → cellular organisms → Bacteria765Open in IMG/M
Ga0207626_101242Not Available757Open in IMG/M
Ga0207626_101299All Organisms → cellular organisms → Bacteria → Terrabacteria group749Open in IMG/M
Ga0207626_101341All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium742Open in IMG/M
Ga0207626_101387All Organisms → cellular organisms → Bacteria → Terrabacteria group737Open in IMG/M
Ga0207626_101601All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9710Open in IMG/M
Ga0207626_101824All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria687Open in IMG/M
Ga0207626_101840All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria685Open in IMG/M
Ga0207626_101916All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium679Open in IMG/M
Ga0207626_102129All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium662Open in IMG/M
Ga0207626_102190Not Available657Open in IMG/M
Ga0207626_102228All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria655Open in IMG/M
Ga0207626_102402All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria643Open in IMG/M
Ga0207626_102418Not Available642Open in IMG/M
Ga0207626_102432All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium641Open in IMG/M
Ga0207626_102580Not Available630Open in IMG/M
Ga0207626_102593All Organisms → cellular organisms → Bacteria629Open in IMG/M
Ga0207626_102672All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium624Open in IMG/M
Ga0207626_102677All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium624Open in IMG/M
Ga0207626_102911All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium609Open in IMG/M
Ga0207626_103087All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes599Open in IMG/M
Ga0207626_103350All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium586Open in IMG/M
Ga0207626_103449All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium582Open in IMG/M
Ga0207626_103530Not Available578Open in IMG/M
Ga0207626_103685All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria571Open in IMG/M
Ga0207626_103702Not Available571Open in IMG/M
Ga0207626_103820Not Available565Open in IMG/M
Ga0207626_103827Not Available565Open in IMG/M
Ga0207626_103853All Organisms → cellular organisms → Bacteria → Terrabacteria group563Open in IMG/M
Ga0207626_103861All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria563Open in IMG/M
Ga0207626_103925All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium561Open in IMG/M
Ga0207626_103942All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium560Open in IMG/M
Ga0207626_104126All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria554Open in IMG/M
Ga0207626_104164All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium552Open in IMG/M
Ga0207626_104955All Organisms → cellular organisms → Bacteria528Open in IMG/M
Ga0207626_105326All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium517Open in IMG/M
Ga0207626_105396All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria515Open in IMG/M
Ga0207626_105711All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207626_100038Ga0207626_1000382F059436MNRSAEDGEWSSPHSGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLEPPMVGADISASEGPTEAVPGVGSGRGTQERGQSKRPRIAAGRAATPVGSKRPTGGGRPRAVWQRRRATRG
Ga0207626_100464Ga0207626_1004642F005404VSPRIVIASAAVTTLVVFTVWLTDLSMERAILLAPVLVIGAAAVAGLVVFWGKVGWESLRQARHPRLLIAAAAGFVLLLVGLTLLGVQLPRE
Ga0207626_100623Ga0207626_1006232F045004GNVNLNLNALMPTPGNAELVVYILAAILVAIIALAADSVDAPAWVDWFKWVTAAYLISRGIAKASRVLER
Ga0207626_100666Ga0207626_1006662F008918TRSVARWTALAGAAYVVLFVVGVILLFSGAPDGDAPPAKVIQWYSDSGHRDQINIGWVVAGLGIFFFLWFVATLRRAVMSVDGEGILTTVVTIGGSVYAAVAFASIAVNNGIRTMSDDTYRHLVFPELIHAANDASYVMHATGAAGLGAMIIALSLALMWGAVWPKWAGWLGVVVGILAIGSIVFFTQFIFLLWILVVSILMFMRGVPTARAV
Ga0207626_100871Ga0207626_1008712F103538MWILIVYVLIVVVGEAVVVGIGLTLDRTFAAASLPVSLTLFFAVL
Ga0207626_101187Ga0207626_1011871F017623VHLHGLIDVLPIKEVGMSASREDPTAAAGGDEIQLSAAGDHVKGEFRCADCGYAITVCRELPPCAMCGCESWQAGLWRPFGRALATSTLARD
Ga0207626_101194Ga0207626_1011941F041998LELLDKGFPPLRVGPAEQRLGFLPGQLEAVQRCSDRLATAPQPEPLASPMDKAAQRPARGWIGPNYGRRRGRALGGVDDLAEFGSAVRAKKGRRPPVRRNVSAAGPWAL
Ga0207626_101242Ga0207626_1012422F051849MCPVCLTSAALIAASATSSGGLTAFMMNKFYRRKKTNQARGKQNESKR
Ga0207626_101299Ga0207626_1012991F064009HPLNVDKATLDRVSVSKRHTPQSADEAARPRDPGKQEARPIPRSG
Ga0207626_101341Ga0207626_1013411F064969MDIPVQYFQSVIAIELAVSGALLWQIRFFESKTARRQGDPLPDARLRLGLALVLGMTVFGSLWAMADEGPRWAAVAVTIGLALSL
Ga0207626_101387Ga0207626_1013871F066993RLLLRPGPFDAFRATLRPRERYAVDVPPGQKGPSITRGGVVRAYSAFYFLPAIQVPRAQRVFHYRFK
Ga0207626_101387Ga0207626_1013872F010168VRATGLLGANLLIAAVGLGTLPLLGVARSWRELLSRCGLAYLCGLVLVGIVSAHLALVHVSVGWIALSVLAAAAVVVTVWRLHGTEPPRLGRPGWVEIAGLGAFAALVVEYARAFRVAPLNRYDAWAIWALKGHALYAFGWADPVVFAGTSYRFANLDYPLLLPSLEAIDFRAMDAFDT
Ga0207626_101601Ga0207626_1016011F031917LIDHVNNLKLQHLVELSKLGDGCVAIEEEIAGWLAEHDVVFAGHTIPFVLMPHFVSPGQLGRVKRAVACLSAVLDRFCDAYADDERLRDELAVPPAEDALIRLDPGFSRP
Ga0207626_101824Ga0207626_1018242F002575MAKTPDADGQAREFIDRVVESHRKNGYGVKLSKKRYEEAVARVAASFRGLADASKGRAA
Ga0207626_101840Ga0207626_1018401F047941TISGGTFNKNATCVAACFTDDFVKAFFGASAVFTCDGATNSTDCKFNFNYTAPARAANRPRLLVRKWQDRGKGSGTTLQEHFHGDIASS
Ga0207626_101916Ga0207626_1019162F040280VPPSDEKAAVLAYSATFVVMALLHLVWWNYARRNRRLIADTTPDSALRAVDRAYFPGVPMYGTVLVVAFFSPLAAVVLTLAIAAFYLPSAALFDRGG
Ga0207626_102129Ga0207626_1021292F001160PMQVEKTIAFITEDEPAGLEIRINFGVFAGRDATAAELEELGKLLVPEAGEVSIVGEQRHEMAEDAEVVVHQVLVAVSPKRVPDDPLEKRAFCERLVTLAEIWARQRFNERHAELTEL
Ga0207626_102190Ga0207626_1021901F098849MHIPIHIKVICKQDSVEKVREFLSPNKLIHVMEFHDVKTTDKDMGIVDISGVVFDDEDIPLIENNLKHYGQVKINRGKVRILTLNTILSSLIVAGIVFVALLAHGFNEEFYKEVFEHHNTKVISETALTIGLSSVAGF
Ga0207626_102228Ga0207626_1022282F025886MQIAEEIRCGCGYLLFGDEEEDMLRDADEHVRTVHPELVGTLSPLELARPLDEDEPAS
Ga0207626_102402Ga0207626_1024022F072777VGERRPTSRLNEVWAVWLLFGTVAVFVFITYWRLPPAVLWKTTNTGFVGGAGRAFVFLSFSAALAAVATLPIVTDRLADRRAAVLAAVAFVLCATVAYPGVQTESHLDPKWSNTFAV
Ga0207626_102418Ga0207626_1024182F034093TRQTLRSQKPLLERACGFESRPGHGKLHAQGALCIASKARRMAELISFVPTLCALSLVVFGLGGYQPTAPIVLWTIAGAIMGGPVAVNLFGFAGWLVMVVAGTVACTAYAAGRRRPAFAPVPARSVPGVTK
Ga0207626_102432Ga0207626_1024321F015774VFRLACTVQPKAQPAGNTVTVAGARPETNTTNNQATATVQITAPFVPPPVYCVAVSKITPNQLFVGRKTTLTIHLTKHGQAAKGIRVRIKGPKLNLTTKPSNAQGLVKQVVKLKKAGIATFTPLASKHCNTKRVGVTGVFTPPVTG
Ga0207626_102580Ga0207626_1025801F005968VLGAIWTYLIPVFVLGGLLFLLIVLNLLARVQGGRYVRPLAQGLMKLPWVGKQLKKASQTTLERKNPELASAIQKLERSGATRDPMRAQQALSRLSARERKAWLEAAGEQDALPEAMNRQQRRAAQKLKKRR
Ga0207626_102593Ga0207626_1025931F025844VRAETRHSLKEDRFSRATINAAERTVHWTVEHQKKLII
Ga0207626_102672Ga0207626_1026722F017112MANVGDRLTVLAFAVFVLAAIVGLAFLAGYLIGRILL
Ga0207626_102677Ga0207626_1026771F028017QPRGMMVLTLSGSKVDEITFFADPALPGRFGLPERI
Ga0207626_102911Ga0207626_1029111F058060VKRLWASFGIRLQALLLGVLVCVACGTQGRIKDICGCLALEPDAADYRHNAKHVAIPSGTPQEIDVATILAWPQDLALPIDQPRTGRELQLMHISQAFLENASVNPGDCDVHMEISQVASKTAPRVVIETPIDSEYCSARRTLQSQLKQKGFQLDIQHGGDLAQPLPV
Ga0207626_103087Ga0207626_1030871F099511GFDHVPTEEELTEIADRWRPYRSLAVSYLFASEYDEGP
Ga0207626_103350Ga0207626_1033501F013046ASLATAGDDEYVEFWPAGALAKGQFSCTACGGRVTVHQVLPRCTVCGERLWERAEWSPFARADTPH
Ga0207626_103449Ga0207626_1034491F045447MILTTILERGGTTMKNVLAAAVLVLVLAPLAQAAGPVQSTSPWDRTRVIAAGPDACSFAIQVHSFGTIHTWTYPDGTVKTILQNFHIEWTNLDTGKVAATPLGGPAIEYPDGTIVINGNNARFVAPGEGPVYADLGRTITTVEGVVFSAGQHSETLFPN
Ga0207626_103530Ga0207626_1035301F017030KDDADVRKEFDAKLKQAIEDIKAKLEREIADRKQADIDIKADLGREISDRKQADTDLGRKIGEAADPETLKACVIGFARYKSGTDMDKEVSDSLPATLVAVPSTWTIEDCRKLATTLAHQSGMTIRGFKPACIFREAGADPKISLGVGIPDDIGGAWSVNWWPLYLSEAKPFNKGFTPGPNCGW
Ga0207626_103685Ga0207626_1036851F100918LGYLAARRSRAPRLFLAALAVLAVLLVQVGLGELQYRLHLPWYLVLLHVGVAATAWAGIVALITAFWRPPAWLAVGRA
Ga0207626_103702Ga0207626_1037022F065025MTRKVLVRVALTLIVTGGCLAYILWQLNVRRTAHILVHSNLGWFAGAVLVMLSGVP
Ga0207626_103820Ga0207626_1038201F047757VSDRIQEVAERANVPEDFVRQLVGANALPGGEGELELAAAVRRARLLWSWTAAGLSVETVLALVNRGALSLAFLDAPVMALPERLDRSYEQLAADRGVPMSFLQALHQSL
Ga0207626_103827Ga0207626_1038271F070430MKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQLA
Ga0207626_103853Ga0207626_1038532F002375MHHGHRRRRGRFGHRWYDRENVLERLESYQRDLEQELADVSDLIQRLKAGEAATGTAEPQSV
Ga0207626_103861Ga0207626_1038612F002206MRGVIDETRSERTTRLLVSRLDALAKVAVGLHHSDATRLVELASVATMHAIALETLHADRAEEIWRQAHARH
Ga0207626_103925Ga0207626_1039252F062656MRRLWLLLLCALVFAPSSAAAGKTVDRGIVVRVQPPRLVIRELDGSRVRFATNRATIVTLAGRRVPLRRLRRGDVATI
Ga0207626_103942Ga0207626_1039421F057755MPRLLFPLLALALTFGVAAARPAPAESTHLKLIVGVTDDTAKWMTRQDGIVGVHRDLRLMAVRVTIPWRPGQVGPTKLQKVYLHRIGRMLQLNDRIVLSVYNVARYAPTTRLRRNRYCAFLRGAVRRLPLIDDVEIWNEANSPTYWPQSTGAPGYAALLGRCY
Ga0207626_104126Ga0207626_1041261F077503MSTTPPEQPTTPQQPGGGYGSSGPNVNLNLSALMPTPGNAELVVYILAMVL
Ga0207626_104164Ga0207626_1041641F040930MSTSLESIRVADRIVTAISRWLAHHSSDDELRHELEVIDLVELTPTQAEAVLELQNELEVNTERPAVEMIAREALEAIAVAD
Ga0207626_104955Ga0207626_1049551F043382MTAEQMIYRAEQAQRLLERYRELERERESAGFYEDALEARRLRLEQEASVTYWRGRAS
Ga0207626_105326Ga0207626_1053261F016218VSPSQRSSLFREVNDRIYELLESAEPDLPGEFLCECGADCDHRVQLLPAAFATLRQTGRIVRSPKCNGAVLELRGVPALS
Ga0207626_105396Ga0207626_1053961F013555LQDARKLVAESWCHGADARDANGFEVDPWDDDAASWSLLGAVVAVLEREASLSGELPLDELGAALYALADLIETDSLVDWNDDQGQTQAKVVAVLDQAAAAYEDSCAVLELSLN
Ga0207626_105619Ga0207626_1056191F032015VFGSLDYIYVPAADVDAEAERYAGTLGAELIWKVRAMGTTVACVRVDEAGDDPSSRDVHL
Ga0207626_105711Ga0207626_1057111F095960DLIAATLVEGISNAYEVVLEESSHTPVLEETERYLEAISMFMRQCE

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