3300026916: Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN109 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026916
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0055415 | Ga0208066
• Sample Name: Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN109 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11292302
• Sequencing Scaffolds: 28
• Novel Protein Genes: 30
• Associated Families: 30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6
All Organisms → cellular organisms → Bacteria → Acidobacteria	7
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Browns Valley, California, USA
• Coordinates
  • Lat. (^o): 39.23550963
  • Long. (^o): -121.2836963
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000132	Metagenome / Metatranscriptome	1972	Y
F000477	Metagenome / Metatranscriptome	1097	Y
F000530	Metagenome / Metatranscriptome	1047	Y
F002831	Metagenome / Metatranscriptome	527	Y
F008320	Metagenome / Metatranscriptome	335	Y
F008568	Metagenome / Metatranscriptome	331	Y
F008902	Metagenome / Metatranscriptome	326	Y
F010844	Metagenome / Metatranscriptome	298	Y
F019716	Metagenome / Metatranscriptome	228	Y
F019883	Metagenome / Metatranscriptome	227	Y
F024398	Metagenome / Metatranscriptome	206	Y
F026671	Metagenome / Metatranscriptome	197	Y
F029256	Metagenome / Metatranscriptome	189	Y
F032380	Metagenome / Metatranscriptome	180	Y
F035013	Metagenome / Metatranscriptome	173	Y
F035893	Metagenome / Metatranscriptome	171	Y
F036890	Metagenome / Metatranscriptome	169	Y
F057571	Metagenome / Metatranscriptome	136	Y
F060413	Metagenome / Metatranscriptome	133	Y
F063976	Metagenome / Metatranscriptome	129	Y
F066040	Metagenome / Metatranscriptome	127	Y
F067006	Metagenome / Metatranscriptome	126	Y
F074106	Metagenome / Metatranscriptome	120	Y
F075771	Metagenome / Metatranscriptome	118	Y
F077543	Metagenome	117	Y
F077845	Metagenome / Metatranscriptome	117	Y
F087158	Metagenome / Metatranscriptome	110	Y
F094240	Metagenome	106	N
F095205	Metagenome / Metatranscriptome	105	Y
F102918	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208066_100362	Not Available	1024
Ga0208066_100376	All Organisms → cellular organisms → Bacteria	1016
Ga0208066_100530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	926
Ga0208066_100850	All Organisms → cellular organisms → Bacteria	813
Ga0208066_100902	All Organisms → cellular organisms → Bacteria → Acidobacteria	802
Ga0208066_100904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802
Ga0208066_100998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780
Ga0208066_101139	All Organisms → cellular organisms → Bacteria	751
Ga0208066_101398	Not Available	704
Ga0208066_101495	All Organisms → cellular organisms → Bacteria	691
Ga0208066_101969	Not Available	632
Ga0208066_102086	Not Available	621
Ga0208066_102101	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	620
Ga0208066_102272	All Organisms → cellular organisms → Bacteria → Acidobacteria	604
Ga0208066_102342	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599
Ga0208066_102408	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	594
Ga0208066_102537	All Organisms → cellular organisms → Bacteria → Acidobacteria	583
Ga0208066_102561	All Organisms → cellular organisms → Bacteria → Acidobacteria	581
Ga0208066_102878	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559
Ga0208066_102916	Not Available	557
Ga0208066_103121	All Organisms → cellular organisms → Bacteria → Acidobacteria	545
Ga0208066_103212	All Organisms → cellular organisms → Bacteria	539
Ga0208066_103622	All Organisms → cellular organisms → Bacteria → Acidobacteria	518
Ga0208066_103623	Not Available	518
Ga0208066_103627	All Organisms → cellular organisms → Bacteria	518
Ga0208066_103795	All Organisms → cellular organisms → Bacteria → Acidobacteria	510
Ga0208066_103825	Not Available	508
Ga0208066_104015	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208066_100362	Ga0208066_1003622	F095205	VSYTMRAALGVAALATLYIGILPNRFIEIVNWALGIAQNPAIAKLTH
Ga0208066_100376	Ga0208066_1003763	F008568	GPLIEVAKAQGFTMEEDPYDIAIGGKTLVRGDFHKDVGSRVMRQSTLAMLAHGYAVSITVIGGTDDEVEDLVDGLSFSASAK
Ga0208066_100530	Ga0208066_1005302	F029256	GIQKINSSGITNDPIAIDVGGGVDYRLHFKNFSWRFQGDGIRTKYASATEYDYRASTGIVWRF
Ga0208066_100850	Ga0208066_1008502	F077543	MLPAGKSLRTLREKLGLTMRDVETSSARVAEKYRNEEFSIPP
Ga0208066_100902	Ga0208066_1009022	F035013	MAGRLEELREELRRLMEEQAQSLKRQTFGGLSAEELGEQDRRLKRIREVSADFLAALKNKLP
Ga0208066_100904	Ga0208066_1009041	F060413	MSQQGLSPEFALGYRAVLLDGFTREAEITKKVIAA
Ga0208066_100998	Ga0208066_1009981	F063976	GDTSEQKTVRYPNGGKPLVIVYHEGKAAEIKPGTPGS
Ga0208066_101139	Ga0208066_1011391	F035893	MLRRKTIIVLTITLAVTLMVSAFSYLYISQTLRLRIDNANETAQQLTRQLAYAAENDPPDFSSTRVDTTDPVAVRRAMVEYLQTDID
Ga0208066_101398	Ga0208066_1013981	F066040	SKISESIAEGAQLMTDKQVADMQAASDAAQAATDAAAAYHPEEVAVDPAEEISMEQVLGPGLHKKPVAAEEAEVPKAETQTV
Ga0208066_101495	Ga0208066_1014952	F008320	MPITQIPFQDPVAPPEKPQPEQLALYDIRNWETMDGDAGVFEPHLLIQLQDDLERSRKREAAWISVIVHLVLAIVLWNANFIGKYMP
Ga0208066_101969	Ga0208066_1019692	F087158	DAPGFVPVLVTGEGTAPAEPGGRIEIVLGPAVVRVGADVDAAALRRVLEAVRGLA
Ga0208066_102086	Ga0208066_1020861	F026671	MCESMDKNRIQGVSVGRAGNLSQSPYPSRMRSVDSATVHRRQLNLPQEICSVSLQRLRWPKGDLTAEQKSAEGILGYAVGELVRHSNTERWSQQIGKPVTVTEGPNEKSGQ
Ga0208066_102101	Ga0208066_1021011	F074106	MDHLRKSELEAKLRHALKEHQHEGLNMIGNADQLLHRLIDAVEEWTEGGFISQKKSA
Ga0208066_102272	Ga0208066_1022722	F000530	PRPFRVKLRGSVLVLVRLPNRRDVRAAFHQLSTSGGVIHFEKPLDEKLEVQLIFHIGETTIRGKAQMLFPMWATQGWMQPFRFVDLSDESRESLDVNLKSFLGETAKGAAAGA
Ga0208066_102342	Ga0208066_1023421	F036890	APQLEVVGGVHEDREVARRQSGLQPRRQLRASNPTGKGDVFIRIKKDKVFQIESATTTFHTGEGITTFDHPEKIASAYRDMKAYTLLTPPNPALGNRPLVFWIDKKRGIAFAFAYYPAEHKRYLYKTIIFEPNKNLCPEEETIGSPKWQAIPAYATEPPAELAPNL
Ga0208066_102408	Ga0208066_1024081	F077845	TSMRCFLEVAGIHKDGPQPLTDLRTIEQQADRAISLAKAISVLVREVPAPSAPWTSLDSLLNELFNDFIVLLHSGLVTLERQWSSAIQVTSSPVLRHILVLFLSKLVGRNTRPLILTISAQANDGRCAIQLKWRPADSAQAALLDAKSTIAKELSYIHEQIYSIGGEVSLIDGHSEILLKVPAATQGSRPDMVVH
Ga0208066_102537	Ga0208066_1025371	F067006	PGQVLRYEVEAAGSFLPISDAVGAMLNPPRGPCDYALASIITLRPQSPNRDGNIPVEARYSETRVTSVRCSLFSESDFEKRVAALQSLPVMFVVGPHGETEMIKTSGGYFKYWDGGDLLRKVTEDLLQTEFSPQPVAEGATWKPRGQFAYSRDHALKDLELSGADLRFRNLLQVDGKTCAWVTSQYVFSPVDLP
Ga0208066_102561	Ga0208066_1025612	F008902	MHRLMAGTTILEHELSELRLLVERQTGILLDCPNSALAAHVAEYLESQELDAPGALLDRLRAADLDPA
Ga0208066_102878	Ga0208066_1028782	F019883	MPDNAFKDFRLFPAISEAWELTRSGLVIIREELYKLELWHSYANPDIPYYVSISIQKNGTWTRMPDPPFAVGRDADQALRDAMAFLTERLAA
Ga0208066_102916	Ga0208066_1029162	F024398	KLEIYHTLYRLNRSFAAIVAHSQTLEAIRFFPAKSLRNFQGFTRELQAEMNQELLEILHGTELEDWNRYGKVRQAREKELSDPDDVFIHAEERRKELAKRKKKARAFVKKSRA
Ga0208066_103121	Ga0208066_1031211	F000477	MATTKKFTPEIDARLYEELVTTAERNGQTKRHVIEEALRFYLHNVVPSQHLVRREVMDAFEQSVSRNRDLLERLAK
Ga0208066_103212	Ga0208066_1032121	F010844	MPLATIHVPPRPYQAVIENGLLLRAGSVLAELLPQASRIFVVTVPPVRTRWGAKLVRSLKAAG
Ga0208066_103622	Ga0208066_1036222	F002831	VASDPQPDSPKTHRRAVYASEAMGLLLIALLLLVLTLIRYWRVIHWSWR
Ga0208066_103623	Ga0208066_1036232	F032380	SGNGCYVETVMPLAIATALRVDLWIDQERLSPSAVVRTRDPGVGMGIEFTGMTEETKKRFQDHLDKMDPIAFVHKEGR
Ga0208066_103627	Ga0208066_1036272	F057571	LSSDRHHVLKAWIAAILWLIVICIESSAWLSAHNTSRILYPLL
Ga0208066_103671	Ga0208066_1036711	F000132	VSGGPYDMLIEKLAAGVVQVQTPIGPRYVMPSFRQRVYLLWMFRNFPILPHAVLSRRQQRLIDQMCGEQRFASMAYADGMDEAPVIGTVEHRPPIAADQLPRRPMAGATRSLAAEARQRS
Ga0208066_103702	Ga0208066_1037021	F075771	GIIQKGDKKMVNGVRCREWMVAMRGAPSGLEHDTVCIGLEDHLPYEMTVDWAHSRTLFSDYNTAIQLDLPEATVQPASVSN
Ga0208066_103795	Ga0208066_1037951	F102918	MRTKKTAVVETKAAMVASIEFIVRASIHEEYVDSDFVQSILGRIVARPQDEEDEEDAGYIRASLVQFGEALDHGITTDRLGDGIDGEISEY
Ga0208066_103825	Ga0208066_1038251	F094240	LTKTDGMRRPVSGRDAVRSQVIDVLKAQIKRRPAMKKVSI
Ga0208066_104015	Ga0208066_1040151	F019716	MVYFHWIAGTILALAWASRIVDAALGMPSVADISRPEWDRTPVLPAGNPR