Sample 3300026912

Basic Information
IMG/M Taxon OID	3300026912 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0099864 \| Gp0111015 \| Ga0208520
Sample Name	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300026912 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0099864 | Gp0111015 | Ga0208520

Sample Name

Soil and rhizosphere microbial communities from Laval, Canada - mgHPB (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	48571008
Sequencing Scaffolds	33
Novel Protein Genes	39
Associated Families	39

Dataset Contents

Total Genome Size

48571008

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Archaea	3
Not Available	17
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Ciceribacter → Ciceribacter ferrooxidans	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Ciceribacter → Ciceribacter ferrooxidans

Ecosystem Assignment (GOLD)
Name	Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Ecosystem Assignment (GOLD)

Name

Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → rhizosphere → soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Laval, Canada
Coordinates	Lat. (^o)	45.54	Long. (^o)	-73.72	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Laval, Canada

Coordinates

Lat. (^o)

45.54

Long. (^o)

-73.72

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000708	Metagenome / Metatranscriptome	926	Y
F001436	Metagenome / Metatranscriptome	695	Y
F002896	Metagenome / Metatranscriptome	522	N
F003146	Metagenome / Metatranscriptome	505	Y
F003415	Metagenome / Metatranscriptome	488	Y
F005950	Metagenome / Metatranscriptome	385	Y
F007932	Metagenome / Metatranscriptome	342	Y
F008309	Metagenome / Metatranscriptome	335	Y
F009014	Metagenome / Metatranscriptome	324	Y
F009106	Metagenome / Metatranscriptome	323	Y
F009351	Metagenome / Metatranscriptome	319	Y
F012061	Metagenome / Metatranscriptome	284	Y
F013894	Metagenome	267	N
F017416	Metagenome / Metatranscriptome	241	Y
F020986	Metagenome / Metatranscriptome	221	Y
F021765	Metagenome / Metatranscriptome	217	Y
F025352	Metagenome	202	Y
F028851	Metagenome / Metatranscriptome	190	Y
F032360	Metagenome / Metatranscriptome	180	Y
F040303	Metagenome / Metatranscriptome	162	N
F040709	Metagenome / Metatranscriptome	161	Y
F059930	Metagenome / Metatranscriptome	133	Y
F061213	Metagenome / Metatranscriptome	132	N
F064700	Metagenome / Metatranscriptome	128	Y
F067719	Metagenome / Metatranscriptome	125	N
F069724	Metagenome / Metatranscriptome	123	Y
F076232	Metagenome / Metatranscriptome	118	N
F080175	Metagenome / Metatranscriptome	115	N
F080390	Metagenome / Metatranscriptome	115	N
F082904	Metagenome	113	N
F086124	Metagenome / Metatranscriptome	111	N
F087961	Metagenome	110	Y
F090709	Metagenome	108	Y
F093435	Metagenome / Metatranscriptome	106	Y
F093814	Metagenome / Metatranscriptome	106	Y
F093817	Metagenome / Metatranscriptome	106	N
F095438	Metagenome / Metatranscriptome	105	N
F099252	Metagenome / Metatranscriptome	103	N
F099530	Metagenome / Metatranscriptome	103	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208520_1000059	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1952	Open in IMG/M
Ga0208520_1000084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1792	Open in IMG/M
Ga0208520_1000261	All Organisms → Viruses → Predicted Viral	1401	Open in IMG/M
Ga0208520_1000447	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
Ga0208520_1000454	All Organisms → cellular organisms → Archaea	1207	Open in IMG/M
Ga0208520_1000500	Not Available	1173	Open in IMG/M
Ga0208520_1000793	All Organisms → cellular organisms → Archaea	1026	Open in IMG/M
Ga0208520_1000946	Not Available	973	Open in IMG/M
Ga0208520_1001371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	869	Open in IMG/M
Ga0208520_1001630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
Ga0208520_1001634	Not Available	823	Open in IMG/M
Ga0208520_1002504	Not Available	729	Open in IMG/M
Ga0208520_1002586	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
Ga0208520_1002787	Not Available	704	Open in IMG/M
Ga0208520_1003086	Not Available	682	Open in IMG/M
Ga0208520_1003122	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
Ga0208520_1003278	All Organisms → cellular organisms → Archaea	670	Open in IMG/M
Ga0208520_1003650	Not Available	647	Open in IMG/M
Ga0208520_1003709	Not Available	643	Open in IMG/M
Ga0208520_1003892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634	Open in IMG/M
Ga0208520_1004541	Not Available	604	Open in IMG/M
Ga0208520_1004679	Not Available	598	Open in IMG/M
Ga0208520_1005045	Not Available	586	Open in IMG/M
Ga0208520_1005709	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
Ga0208520_1006564	All Organisms → cellular organisms → Bacteria → Terrabacteria group	540	Open in IMG/M
Ga0208520_1006665	Not Available	538	Open in IMG/M
Ga0208520_1006716	Not Available	537	Open in IMG/M
Ga0208520_1007032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Ciceribacter → Ciceribacter ferrooxidans	529	Open in IMG/M
Ga0208520_1007491	Not Available	518	Open in IMG/M
Ga0208520_1007655	Not Available	515	Open in IMG/M
Ga0208520_1007770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M
Ga0208520_1007994	Not Available	508	Open in IMG/M
Ga0208520_1008317	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208520_1000059	Ga0208520_10000591	F000708	MTKPDLALSQIAARFTQHDVEWSRGAFMIIDRRTTNPIARLRPIPDTDRFELFYWSNAKGRWTTFGNFGRMKLMLESAHEIVESDPMFRIPRCR
Ga0208520_1000084	Ga0208520_10000842	F009014	MGVGRKSPGAVMAYDPAVRWRARAWALVAYLAVLAAVAGIVLFALRYQPLSAANFASESVAQSDSKMVRVGYENGGAFSFGFLVVNDGPLPVKIQRIEVTGQSDLLVTVGLETAANRYAGSLGQGDPSLDKFLPFTLAGGDRRWIAVRTRFGNCGRFAAGASETYTRFKVTYSVLGFTKHAWVPLPKDIGVDSPPDYACPTRAA
Ga0208520_1000261	Ga0208520_10002612	F005950	MTYAKQKVKAKIHRTSDYDDKHTGIRDFPDEKAMLHYGLSKVHKVIIKKYAKDDEFMAIARKTRGIKFDYDMELYDHTDTDVKESKMS
Ga0208520_1000447	Ga0208520_10004471	F067719	SGLLATVATGHPAIPTGGDFDFTPLLYAAIGILAFRKLRPGLLLLATPLFLLARGLVDSISDVLGLSTLTTASALALPALLLPLPRQLGRHHRPSAG
Ga0208520_1000454	Ga0208520_10004542	F087961	LKLEETAKGVRISVHVYTNEKQTAINEAIATYLETKQMCEKEKIQIAPMEKSK
Ga0208520_1000454	Ga0208520_10004543	F099530	MNDNNEKRREDRNRKMSLEEDKSILEERIDLFEKSLANTGIGLKLTREEIIHIIKSNPAEFLKLLMEMEVFSQEMIKRV
Ga0208520_1000500	Ga0208520_10005003	F003146	MPRRTSKKDSPAKLAGRMKRRWRVVLLRNKGEILGQVEAPDVASAKAAAVDQFELDEIQRNRIMVQELG
Ga0208520_1000793	Ga0208520_10007931	F082904	LELYTIAFYLTSLLLINSGYSDSNDLTGSYEGKGIYRIEDMSATKKGSDYKFFGYVHNVSNKTLYISDIIMEMFNSKDKLIQLIRIGGGIVIESGEKLPYKVIAHHVNFSHLDHYVVTVLNTNKSPDQLFQKVFMEDASSEKIKGVWQMFGLTKV
Ga0208520_1000926	Ga0208520_10009261	F008309	MAVIERIGRSETRPYVIAWGRLTEEDEHRLRARVAASPCAQITVDLREVEEVTDEGCAAIRNVADDMDFLSQTMVVLYVPERDATRSLERTRLL
Ga0208520_1000946	Ga0208520_10009461	F013894	MTYQLEEPFFEEKGKITAQKEIGDNKTQMTFSSNGTFKGNIEVTNSGDLVSLSKGNKGTSAQGQGVVTTKDGSEKANYTFLQVGKTTTKDGKSVLRGVGSAIWSTDSTGKLAFLDNMLSFFIIEVDEMGNFSSKDRELK
Ga0208520_1001154	Ga0208520_10011541	F099252	MTRDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRRSLATLMGRGGKKSAKETSWIPAGMAEAGDRLATA
Ga0208520_1001371	Ga0208520_10013711	F040709	MVASIAWVLWTERKSKQALDKDALDQAWREVPDDPHYIERRHYKERMRIEDEARAAAAKRASVGSDGIGGS
Ga0208520_1001630	Ga0208520_10016301	F069724	MALLSFRGFGTPSLPAQGEQRRSTYFNIGRDIPRP
Ga0208520_1001634	Ga0208520_10016341	F021765	PHEPTKRASPRASSRSGRARMRDVEPETSTGATGPFGSRIVGLGIGLAAFAAFVMLPFLIPVAFYVVANVYALIKGTTFSSDTANTSVVLTLLVFSVAVFPVGLAVAIAYLGRALSPKRRRAPITRCSCTAASVLAKRT
Ga0208520_1001927	Ga0208520_10019271	F093817	MSSFRELPPSARRVILAYVALGAFGVLLRVPEMRTWSWEDVAATAGLALAAALSEQFTVAVRHRTEVENFSVTDAVWVPALILVSPSVLTLSVLLGSLAGHAYRRWAWYKVAFNASQFVVAITVAEFVYRLFDPPSSFSFMTCVACAVAMSCYFAINEISVALIISRVEGIPLREVVVLPGGLNLLHAGGNLTIGMLAALVWHAGPVGLPLLIAPVVLSFFAY
Ga0208520_1002504	Ga0208520_10025043	F020986	MSKQNIGTFVKAGAVGASDIATELDRAFAAARVNALKGGVELGDTIAPLYAIHKALKATHASGELTDQQYTEKGRELLEMLGSAVVSLFIISRKRPPR
Ga0208520_1002586	Ga0208520_10025861	F080175	GDGTGSPAIGEEPARIAVVLGLPHPPQAFVHLLGHGHDPFLVALADDAQDATGLVDGGDGKSSGLADPQAAAVNQAETAAVYRIADRGENAPHFGMGKRLRQPPLLGKPDLFLNSAQSWPSVFR
Ga0208520_1002787	Ga0208520_10027871	F093814	KQREAATTEWGSVVEKLSVRLKQQAVAARAEALARTVEKLRSLHTGLLVRMSDSEFDRVWYGHCPDEAAPKPVALGPNH
Ga0208520_1003086	Ga0208520_10030861	F086124	MTDIIPTAAKAKDLADDCCEALAGLLSRPTTTARRPITERVLAEMQKTLSDESWAEAMGSPIKTYLGFNSIHLCMRFLRSRGHLEQAARIEAALEAAAGRLSKDKDEDVDPTIN
Ga0208520_1003122	Ga0208520_10031221	F001436	VSFRDARHSDIGVVVLLCVSSIAKGVVMDTHKQDVATLIELLKMAAERWPRSEADQVSQSELLREDHSLLEMWPEACRRTGVGRREFPPGVIKLWKQRLGRAN
Ga0208520_1003278	Ga0208520_10032781	F002896	LLESDISRINEADIDAWSQSFKKVVRESKENSGKGVFVPFLMWRLGEISPVEANKYLVKRKHDECRISYDHNNVEYVIWMMALMFMSWSMTNLKRKTQNGHCQNIDHPHGNMNPRRCQEGTKFHQELYNEYVKTLKDLLIHSESEKDH
Ga0208520_1003650	Ga0208520_10036501	F059930	MSILDGSASPQAPAAGSSPPSDRLRVITAGRVGNMEARLGTSGFDVVAAAETEDGLIDAVSADEPDAIVVEADLCTSLEHVRDMAPDAVLIVVGDHTPAGALGRVERGMSGTAMAGLLHALVAEGVGAAVVWGLVPTFRAGAALQVPQRVGLSLLSAKVDLVREHLVNALRDPAQLVTAAGTVALTV
Ga0208520_1003709	Ga0208520_10037091	F007932	FLGDHGDVGNWRCPLGIAALSVETLIILLVVLAAWQARNRAANLAAAPRPAEQRAPEYSRPG
Ga0208520_1003892	Ga0208520_10038922	F093435	DAWTHRRVGAATAERASLETARASVPFPIELPTALPAGFGLASVELVDAGFGTGVTLYLRDEDADAGIGTIRLHLEAASALPPATSAAQSTVEVDGVQGRFTPDRSQLEWIDGGLYRSLDAPGLALEELLAIAASIGGDGTGG
Ga0208520_1004035	Ga0208520_10040351	F080390	MIIVLAIGMFCASIYMLLSGLTVKQREIAITLRKAKRYGTRDQREIETRRSVNDRIVGPLTQQIADITQKILPKSDPNEIHARLMAAGLSRSMSP
Ga0208520_1004541	Ga0208520_10045412	F064700	NVKKALAVALIVGFLLVDFLFFHDIFKAGEAVTFAQYLTGVLSIPVLVVSAFYLLRGTRSVQK
Ga0208520_1004679	Ga0208520_10046791	F061213	RGVLTRMTPEEIQILVLAELPDVPATTGRKPITDCTREDLAFAIDDYYQAAASLSRSAAGETGLWPDWDRHLARVAAAKAELLELMREQMDKARGAAKVSDLWLGPMEAEFRRRRGHRGE
Ga0208520_1005045	Ga0208520_10050451	F017416	MGKILSVASSEVLKTTRRLLLEQEGFSVCSALDLAEVESLGKTEQVDLALIGHGFRGADKRKIANLVNHYYPGLPILEMCFNSPEIPGADFVLSDSPDDLIAAIKLVLAGRRVRGYPDSF
Ga0208520_1005709	Ga0208520_10057091	F009351	GANTIIIPLNSTNDRMIATQRGTIDATVVPVPSDLKAEELGLRRLLQMGSILPIPQAGFATSEEKIKTARQEIVELLKATIEGIDYTWTQREGTIEIIAKWMKLNPVQAAKAYDSVRDTFSKIGVPTEEQAKAYIAMLSSTASLKGDVAAGSIFDFSLAAEAAKEMTQKK
Ga0208520_1006564	Ga0208520_10065641	F003415	VFGSLDYIYVPTADVDAEAQRYAGALGAELAWKVRGMGTTVACLRVAETGPAILLSGHLQGAGAILVYRVQDYAATVGQLRQRNVTVHELEIPHGPCATFTMEGGQRYAVYQLTRPGAVQLFDGRIDP
Ga0208520_1006665	Ga0208520_10066651	F012061	RASNHSLDRSEADSLAFAIKGRFEKRLFPLLASALMVSAPLAHAEMLPAYDSEAICADVAGGSARQELIMRGCLDFQERTRKEIALAWDKVPVPVRESCTKAAEASGDYWRLKSCIDKEVRSTSAVTGH
Ga0208520_1006716	Ga0208520_10067162	F076232	MVKSWLVRLRLARDDGGSLSEDGIRELTDLLTSNGVLPVLENQESGIVLVHMTIDATSDRAARAAAESMLWDRAHDVWVAHGLPPFT
Ga0208520_1006988	Ga0208520_10069881	F040303	VIENIEPVNAPSCYRISLLSSSLEVTARLKSVDDLDLLMNVLESNRAFFVKND
Ga0208520_1007032	Ga0208520_10070321	F028851	MTPQYSLPTRLRDYIAFLLPWAHGHQLKAIGDFVAAIIEQQTACQAQLARYFGKQEAAVKRLSRLLHNERLDPRLLADAVL
Ga0208520_1007491	Ga0208520_10074912	F032360	NTKPFPNPPQSAETQNPAEAASGKSGPQNAKRVALQQNEKEFRAGVERLYRLASELKQEVDKTVTTEIFSVPMYKRTEEIEKVAKLLKSKAKG
Ga0208520_1007655	Ga0208520_10076552	F009106	MKRTICEAFDRWKGALIDQDKQTTRAARHRAHERVTSMEDLIAETLADDIEGVGINLALYVYISGVDPETADSAVEQVLSAYKDCVRVLGRDLMAKVKRLMPASQQDL
Ga0208520_1007770	Ga0208520_10077701	F095438	AAEDEGFAALAVLAAHAVLESLVNQLGRQEIQSFNERARFLPKWHDLCERTIGRQLDAAPDLERLHALRDGVAGFSGPPERLDRRSPTPPPEVPEMLSVETARWAVDAARRVVEEFHQRAGRERPDWLDWVP
Ga0208520_1007994	Ga0208520_10079942	F025352	RDVQMSSALDEFKKPIEEWARALVDGKPMENLLILYKLLYALGCRIDGIDFEIDRLCVAAIKKAKTLS
Ga0208520_1008317	Ga0208520_10083171	F090709	DTLKQHAIDPDVTLPLDKLSWMQNELVKAGNLKAPIDLANIVDASIRGEAIKRAAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026912: Soil and rhizosphere microbial communities from Laval, Canada - mgHPB (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences