Metagenome / Metatranscriptome Family F069724

Basic Information
Family ID	F069724
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	39 residues
Representative Sequence	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIP
Number of Associated Samples	111
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	17.24 %
% of genes near scaffold ends (potentially truncated)	77.24 %
% of genes from short scaffolds (< 2000 bps)	86.99 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Most Common Taxonomy
Group	Bacteria (57.724 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (13.008 % of family members)
Environment Ontology (ENVO)	Unclassified (27.642 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.715 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.67% β-sheet: 0.00% Coil/Unstructured: 83.33%
Feature Viewer

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Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF00872	Transposase_mut	60.16
PF13546	DDE_5	1.63
PF03972	MmgE_PrpD	0.81
PF00239	Resolvase	0.81
PF13565	HTH_32	0.81
PF01609	DDE_Tnp_1	0.81
PF05593	RHS_repeat	0.81
PF00078	RVT_1	0.81
PF08281	Sigma70_r4_2	0.81
PF00216	Bac_DNA_binding	0.81
PF09286	Pro-kuma_activ	0.81
PF01841	Transglut_core	0.81
PF16901	DAO_C	0.81
PF07592	DDE_Tnp_ISAZ013	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	60.16
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.81
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.81
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.81
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.81
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.81
COG3209	Uncharacterized conserved protein RhaS, contains 28 RHS repeats	General function prediction only [R]	0.81
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.81
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.81
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.81
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.81
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.81

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.72 %
Unclassified	root	N/A	42.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.72 %
Unclassified	root	N/A	42.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.72 %
Unclassified	root	N/A	42.28 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.66 %
Unclassified	root	N/A	42.28 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	52.85 %
Unclassified	root	N/A	42.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.28 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	38.21 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.28 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	25.20 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	8.13 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.81 %
alpha proteobacterium BAL199	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium BAL199	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.28 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	25.20 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	8.13 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
alpha proteobacterium BAL199	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium BAL199	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.28 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	8.13 %
Bradyrhizobium daqingense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium daqingense	1.63 %
Bradyrhizobium australiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium australiense	0.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
alpha proteobacterium BAL199	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium BAL199	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908028\|beta3_all_NODE_52397_len_1486_cov_11_876851	Not Available	1536	Open in IMG/M
2124908035\|B3_GZOS_CLC_ConsensusfromContig5949	Not Available	1618	Open in IMG/M
3300000317\|WSSedL2TaDRAFT_1008771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1009	Open in IMG/M
3300001593\|JGI12635J15846_10683927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	592	Open in IMG/M
3300001661\|JGI12053J15887_10115472	Not Available	1440	Open in IMG/M
3300003351\|JGI26346J50198_1017192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium BAL199	703	Open in IMG/M
3300004080\|Ga0062385_10045158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1869	Open in IMG/M
3300005559\|Ga0066700_10771827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	650	Open in IMG/M
3300005566\|Ga0066693_10258164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	691	Open in IMG/M
3300005569\|Ga0066705_10026264	All Organisms → cellular organisms → Bacteria	3081	Open in IMG/M
3300006046\|Ga0066652_100304986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1416	Open in IMG/M
3300007265\|Ga0099794_10074385	Not Available	1668	Open in IMG/M
3300009089\|Ga0099828_10236875	Not Available	1634	Open in IMG/M
3300009090\|Ga0099827_11537610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	579	Open in IMG/M
3300009525\|Ga0116220_10252482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	770	Open in IMG/M
3300009525\|Ga0116220_10564802	Not Available	521	Open in IMG/M
3300009818\|Ga0105072_1010595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium daqingense	1622	Open in IMG/M
3300010045\|Ga0126311_10115666	Not Available	1864	Open in IMG/M
3300010166\|Ga0126306_10113644	Not Available	1973	Open in IMG/M
3300012096\|Ga0137389_10077151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2594	Open in IMG/M
3300012285\|Ga0137370_10107479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1577	Open in IMG/M
3300012357\|Ga0137384_11384730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	551	Open in IMG/M
3300012362\|Ga0137361_11507552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	594	Open in IMG/M
3300012532\|Ga0137373_10252357	Not Available	1424	Open in IMG/M
3300012925\|Ga0137419_10999292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300014268\|Ga0075309_1009923	Not Available	1934	Open in IMG/M
3300014495\|Ga0182015_10046686	All Organisms → cellular organisms → Bacteria	3197	Open in IMG/M
3300014495\|Ga0182015_10962976	Not Available	531	Open in IMG/M
3300015068\|Ga0167645_105537	Not Available	1446	Open in IMG/M
3300015241\|Ga0137418_10086587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2834	Open in IMG/M
3300015241\|Ga0137418_10597527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium australiense	866	Open in IMG/M
3300018429\|Ga0190272_12562676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	557	Open in IMG/M
3300018433\|Ga0066667_10121823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1784	Open in IMG/M
3300019879\|Ga0193723_1045948	Not Available	1289	Open in IMG/M
3300019886\|Ga0193727_1183039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	537	Open in IMG/M
3300019887\|Ga0193729_1066504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1431	Open in IMG/M
3300019999\|Ga0193718_1040372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1025	Open in IMG/M
3300020083\|Ga0194111_10511966	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300020150\|Ga0187768_1020502	Not Available	1406	Open in IMG/M
3300020199\|Ga0179592_10444661	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300020603\|Ga0194126_10209478	Not Available	1386	Open in IMG/M
3300021073\|Ga0210378_10062168	Not Available	1467	Open in IMG/M
3300021078\|Ga0210381_10162306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	763	Open in IMG/M
3300021081\|Ga0210379_10067565	Not Available	1451	Open in IMG/M
3300021081\|Ga0210379_10221627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	817	Open in IMG/M
3300021081\|Ga0210379_10233821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
3300021344\|Ga0193719_10076014	Not Available	1458	Open in IMG/M
3300023101\|Ga0224557_1072503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1490	Open in IMG/M
3300025316\|Ga0209697_10090768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2078	Open in IMG/M
3300025588\|Ga0208586_1008491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2679	Open in IMG/M
3300025627\|Ga0208220_1027561	Not Available	1780	Open in IMG/M
3300025664\|Ga0208849_1040836	Not Available	1440	Open in IMG/M
3300026029\|Ga0208002_1011478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	854	Open in IMG/M
3300026045\|Ga0208535_1004299	Not Available	1455	Open in IMG/M
3300026046\|Ga0208780_1018104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	642	Open in IMG/M
3300026089\|Ga0207648_10296775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1448	Open in IMG/M
3300026316\|Ga0209155_1062383	Not Available	1425	Open in IMG/M
3300026318\|Ga0209471_1108082	Not Available	1196	Open in IMG/M
3300026450\|Ga0247847_1025613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	784	Open in IMG/M
3300026843\|Ga0208126_1000915	Not Available	1264	Open in IMG/M
3300026850\|Ga0208892_1000764	Not Available	1503	Open in IMG/M
3300026891\|Ga0208889_1009964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	585	Open in IMG/M
3300026912\|Ga0208520_1001630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300026995\|Ga0208761_1001267	Not Available	1447	Open in IMG/M
3300027041\|Ga0209876_1024669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300027523\|Ga0208890_1030892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	807	Open in IMG/M
3300027561\|Ga0209887_1022207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium daqingense	1516	Open in IMG/M
3300027568\|Ga0208042_1098475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	740	Open in IMG/M
3300027568\|Ga0208042_1122705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	655	Open in IMG/M
3300027616\|Ga0209106_1115797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300027645\|Ga0209117_1039332	Not Available	1443	Open in IMG/M
3300027655\|Ga0209388_1078885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	948	Open in IMG/M
3300027696\|Ga0208696_1070266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1193	Open in IMG/M
3300027701\|Ga0209447_10213880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300027812\|Ga0209656_10033253	All Organisms → cellular organisms → Bacteria → Proteobacteria	3035	Open in IMG/M
3300027875\|Ga0209283_10136991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1620	Open in IMG/M
3300027882\|Ga0209590_10145768	Not Available	1464	Open in IMG/M
3300027898\|Ga0209067_10192216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1095	Open in IMG/M
3300027957\|Ga0209857_1014911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1537	Open in IMG/M
3300028069\|Ga0255358_1010511	Not Available	1259	Open in IMG/M
3300028652\|Ga0302166_10111847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	615	Open in IMG/M
3300028678\|Ga0302165_10227884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	519	Open in IMG/M
3300028796\|Ga0307287_10052557	Not Available	1499	Open in IMG/M
3300028807\|Ga0307305_10121317	Not Available	1208	Open in IMG/M
3300028814\|Ga0307302_10078660	Not Available	1559	Open in IMG/M
3300028819\|Ga0307296_10120471	Not Available	1410	Open in IMG/M
3300028867\|Ga0302146_10124440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1049	Open in IMG/M
3300028884\|Ga0307308_10090885	Not Available	1450	Open in IMG/M
3300029442\|Ga0239579_1008675	Not Available	2183	Open in IMG/M
3300030014\|Ga0302175_10078147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	738	Open in IMG/M
3300030399\|Ga0311353_10451311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1148	Open in IMG/M
3300030706\|Ga0310039_10404005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	503	Open in IMG/M
3300031114\|Ga0308187_10244141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	649	Open in IMG/M
3300031198\|Ga0307500_10019059	Not Available	1463	Open in IMG/M
3300031456\|Ga0307513_10713242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	709	Open in IMG/M
3300031524\|Ga0302320_11409141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	693	Open in IMG/M
3300031595\|Ga0265313_10248385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	726	Open in IMG/M
3300031740\|Ga0307468_100298028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1168	Open in IMG/M
3300031740\|Ga0307468_101094543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	709	Open in IMG/M
3300031753\|Ga0307477_10171063	Not Available	1514	Open in IMG/M
3300031754\|Ga0307475_10238779	Not Available	1455	Open in IMG/M
3300031823\|Ga0307478_11624562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	533	Open in IMG/M
3300031965\|Ga0326597_10422234	Not Available	1475	Open in IMG/M
3300032061\|Ga0315540_10085056	Not Available	1467	Open in IMG/M
3300032160\|Ga0311301_10456878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1920	Open in IMG/M
3300032174\|Ga0307470_11404392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	576	Open in IMG/M
3300032174\|Ga0307470_11883187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	508	Open in IMG/M
3300032177\|Ga0315276_10367039	Not Available	1538	Open in IMG/M
3300032177\|Ga0315276_12559773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	510	Open in IMG/M
3300032401\|Ga0315275_10451259	Not Available	1441	Open in IMG/M
3300032401\|Ga0315275_11483538	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300033158\|Ga0335077_11913277	Not Available	554	Open in IMG/M
3300033407\|Ga0214472_10167949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2140	Open in IMG/M
3300033407\|Ga0214472_10330089	Not Available	1445	Open in IMG/M
3300033813\|Ga0364928_0015171	Not Available	1488	Open in IMG/M
3300034071\|Ga0335028_0238072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1108	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.56%
Host-Associated	Host-Associated	2.44%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.49%
Aquatic	Environmental → Aquatic	17.07%
Plants	Host-Associated → Plants	2.44%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.36%
Freshwater	Environmental → Aquatic → Freshwater	14.63%
Peat	Environmental → Terrestrial → Peat	7.32%
Marine	Environmental → Aquatic → Marine	1.63%
Sediment	Environmental → Aquatic → Sediment	0.81%
Floodplain	Environmental → Terrestrial → Floodplain	0.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.81%
Roots	Host-Associated → Plants → Roots	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.28%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.13%
Lake	Environmental → Aquatic → Freshwater → Lake	7.32%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.32%
Loam	Environmental → Terrestrial → Soil → Loam	5.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.06%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.25%
Sand	Environmental → Terrestrial → Soil → Sand	3.25%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.81%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.02%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.32%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.06%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.06%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.25%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.25%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.25%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.63%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.63%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.81%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.20%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.88%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.06%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.25%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.25%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.25%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	3.25%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.44%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.44%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.44%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.44%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.63%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.63%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.63%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.63%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.81%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.81%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.81%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.81%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.81%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.81%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.81%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.81%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908028	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
2124908035	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
3300000317	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L2 Tule	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014268	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015068	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8C, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020083	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015033 Kigoma Deep Cast 300m	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020603	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150m	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300025316	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG (SPAdes)	Environmental	Open in IMG/M
3300025588	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025627	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025664	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300026029	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026045	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026046	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1 (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026450	Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T25	Environmental	Open in IMG/M
3300026843	Soil and rhizosphere microbial communities from Laval, Canada - mgHAA (SPAdes)	Environmental	Open in IMG/M
3300026850	Soil and rhizosphere microbial communities from Laval, Canada - mgHAC (SPAdes)	Environmental	Open in IMG/M
3300026891	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB (SPAdes)	Environmental	Open in IMG/M
3300026912	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB (SPAdes)	Environmental	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027041	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300028069	Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T0	Environmental	Open in IMG/M
3300028652	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3	Environmental	Open in IMG/M
3300028678	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_2	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028867	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_3	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300029442	Freshwater lake microbial communities from Alinen Mustajarvi, Finland - AM13	Environmental	Open in IMG/M
3300030014	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032061	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-10	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M
3300034071	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
beta3_all_00866560	2124908028	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPRIGQRPF
B3_GZOS_CLC_02297100	2124908035	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSSYFNIGRDIPRIGQRPF
WSSedL2TaDRAFT_10087711	3300000317	Wetland	MALLSFRGIDTPSLQAQGEQRLPPIFNIQRDIPRA
JGI12635J15846_106839272	3300001593	Forest Soil	MLDVFMALLSFRGIDTPSLPAQGEQRRSAYFNIGRD
JGI12053J15887_101154723	3300001661	Forest Soil	MVDVFMALLSSRGFDTPSLSAQGEQRRSTYFNIGRDIPQND
JGI26346J50198_10171922	3300003351	Bog Forest Soil	MALLSLRGFDTPSLPAQGGQRLLSYFNINRDIPLQTHDAHA
Ga0062385_100451583	3300004080	Bog Forest Soil	MALLSLRGFDTPSLPAQGGQRLLSYFNINRDIPACTAKSDLR*
Ga0066700_107718271	3300005559	Soil	VLNLFMALLSFRGFDTPSLQAQGEQRRSSFFNIGRDIP
Ga0066693_102581641	3300005566	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIDRDI
Ga0066705_100262644	3300005569	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIP*
Ga0066652_1003049862	3300006046	Soil	AVVIMVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIP*
Ga0099794_100743851	3300007265	Vadose Zone Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDIS
Ga0099828_102368751	3300009089	Vadose Zone Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDISSET*
Ga0099827_115376101	3300009090	Vadose Zone Soil	ILFMALLSFRGIITPSLPAQGEQRRPSFFNIGRDIP*
Ga0116220_102524822	3300009525	Peatlands Soil	MALLSFRGISTPSLPAQGEQRRFSFFNIRRDIPMSFQYGERA*
Ga0116220_105648021	3300009525	Peatlands Soil	SFRGISTPSLPAQGEQRRFSYFNIQRDIPVQLPWHI*
Ga0105072_10105952	3300009818	Groundwater Sand	MALLLLRGFSTPSLLAQGEQRLPSYFNIDRDIPHESIG*
Ga0126311_101156663	3300010045	Serpentine Soil	MALLAPRGFSTPSLPAQGGQRRLLFLNIDRDIAGFPPDPPL*
Ga0126306_101136443	3300010166	Serpentine Soil	MALLSFRGIDTPSLPAQGEQRRPIYFNIDRDISGDF
Ga0137389_100771512	3300012096	Vadose Zone Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDISSLPTASR*
Ga0137370_101074791	3300012285	Vadose Zone Soil	MALLSSRGISTPSLQAQGEQRRFSYFNNHRDIAGSI
Ga0137384_113847302	3300012357	Vadose Zone Soil	MVDVFMVLLSFCGFDTPSLPAQGGQRLPSYFNIDRDIPE
Ga0137361_115075522	3300012362	Vadose Zone Soil	MALVIMLDVFMALLSFRGISTPSLPAQGEQRRLSDFNIDRDNPDERCGRLL*
Ga0137373_102523571	3300012532	Vadose Zone Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDISC*
Ga0137359_102364054	3300012923	Vadose Zone Soil	LNLFMALLSFRGISTPSLPAQGEQRRSFYFNIRRDILFSIP*
Ga0137419_109992921	3300012925	Vadose Zone Soil	MVDVFMALLSFCGFDTPSLPAQGEQRRSTYFNIGRDIPLGNAAA*
Ga0075309_10099231	3300014268	Natural And Restored Wetlands	MLDLFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDNSLPLR*
Ga0182015_100466861	3300014495	Palsa	IFMALLSSRGIITPSLTAQGEQRRSFFFNIPRDIPPTGARAI*
Ga0182015_109629761	3300014495	Palsa	LLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPIVQ*
Ga0167645_1055371	3300015068	Glacier Forefield Soil	MVDVFMALLSFRGFDTPSLSAQGEQRRFTYFNIGRDIPMSL
Ga0137418_100865876	3300015241	Vadose Zone Soil	HALPTGALGIALVIMVDVFMALLSFRGFDTPSLSAQGEQRRFTYFNIGRDIP*
Ga0137418_105975271	3300015241	Vadose Zone Soil	MALLSFRGFDTPSLSAQGEQRRSSYFNIRRDIPRR
Ga0187767_102722852	3300017999	Tropical Peatland	MALLSSRGISTPSLQAQGKQRRSSYFNNDWDIAKMK
Ga0190272_125626762	3300018429	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPSAGLESL
Ga0066667_101218232	3300018433	Grasslands Soil	GIALIIMVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIP
Ga0193715_10179591	3300019878	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIDRDIPESDYRLLMGSGM
Ga0193723_10459481	3300019879	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPGC
Ga0193727_11830391	3300019886	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDI
Ga0193729_10665041	3300019887	Soil	MALLSFRGISTPSLLAQGEQRRSSFFNIPRDIPLATP
Ga0193718_10403722	3300019999	Soil	MVDVFMALLSFRGFDTPSLSAQGEQRRFTYFNIGRDIP
Ga0194111_105119662	3300020083	Freshwater Lake	FMSLLSFRGISTPSLQAQGEQRRSSYFNIGRDIASRALISG
Ga0187768_10203811	3300020150	Tropical Peatland	MALLSSRGISTPSLQAQGEQRRSSYFNNDRDIATLNVLLSF
Ga0187768_10205022	3300020150	Tropical Peatland	MALLSFVESSTPSLQAQGEQRRSFFFNIPRDNSQAD
Ga0179592_104446612	3300020199	Vadose Zone Soil	AVAVVILVFMALLSFRGISTPSLSAQGEQRRPSFFNIRRDIP
Ga0194126_102094781	3300020603	Freshwater Lake	MALLSFRGFNTPSLPAQGEQRRSSYFNIDRDIPSR
Ga0210378_100621682	3300021073	Groundwater Sediment	MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPVTVLARRI
Ga0210381_101623062	3300021078	Groundwater Sediment	MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPPNMN
Ga0210379_100675651	3300021081	Groundwater Sediment	MALLSFRGISTPSLPAQGEQRRSFYFNIRRDIPKRAG
Ga0210379_102216271	3300021081	Groundwater Sediment	MVDVFMALLSFRGFDTPSLQAQGEQRRSTYFNIGRDIPSLDPGS
Ga0210379_102338212	3300021081	Groundwater Sediment	LVIMVDVFMALLSFRGFDTPSLQAQGEQRRSTYFNIGRDIPHGPR
Ga0193719_100760141	3300021344	Soil	MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPCFGGSNL
Ga0224557_10725031	3300023101	Soil	MALLSFRGISTPSLQAQGEQRRSSYFNNDRDIASMRSPR
Ga0209697_100907681	3300025316	Freshwater Lake Hypolimnion	MALLSFRGFDTPSLQAQGEQRLLYNFNIDRDISYGPRVAPYWQRG
Ga0208586_10084913	3300025588	Arctic Peat Soil	MVDVFMALLSFRGISTPSLSAQGEQRRSTYFNIGREYVMQS
Ga0208220_10275613	3300025627	Arctic Peat Soil	MVDVFMALLSFRGISTPSLSAQGEQRRSTYFNIGRDIPI
Ga0208849_10408362	3300025664	Arctic Peat Soil	MVDVFMALLSFRGISTPSLSAQGEQRRSTYFNIGRDIPR
Ga0208002_10114781	3300026029	Natural And Restored Wetlands	MLDLFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDNS
Ga0208535_10042991	3300026045	Natural And Restored Wetlands	MLDLFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDNSQPRP
Ga0208780_10181041	3300026046	Natural And Restored Wetlands	MLDLFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDNSN
Ga0207648_102967751	3300026089	Miscanthus Rhizosphere	MVDVFMALLSFRGISTPSLPAQGEQRRSSYFNIPRGNSALCYHQDIQVTV
Ga0209155_10623833	3300026316	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIDRDIPFS
Ga0209471_11080822	3300026318	Soil	MVGVFMALLSFRGFDTPSLPAQGEQRRSTYFNIDRDIPRAEMA
Ga0247847_10256132	3300026450	Soil	MALLSSRGISTPSLPAQGEQRRSSIFNIPRDILEAISS
Ga0208126_10009152	3300026843	Soil	MALLLLRGFSTPSLLAQGEQRLPSFFNIRRDIPLMIFPD
Ga0208892_10007642	3300026850	Soil	MALLLLRGFSTPSLLAQGEQRLPSYFNIRRDIPYCA
Ga0208889_10099642	3300026891	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIP
Ga0208520_10016301	3300026912	Soil	MALLSFRGFGTPSLPAQGEQRRSTYFNIGRDIPRP
Ga0208761_10012671	3300026995	Soil	MALLLLRGFSTPSLLAQGEQRLPSFFNIRRDIPACG
Ga0209876_10246692	3300027041	Groundwater Sand	MALLLLRGFSTPSLLAQGEQRLPSYFNIDRDIPMIWHSS
Ga0209524_10091121	3300027521	Forest Soil	MALLSSRGISTPSLQAQGEQRRSSYFNNHQDIADF
Ga0208890_10308922	3300027523	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPS
Ga0209887_10222073	3300027561	Groundwater Sand	MALLLLRGFSTPSLLAQGEQRLPSYFNIDRDIPARK
Ga0208042_10984752	3300027568	Peatlands Soil	MALLSFRGISTPSLPAQGEQRRFSFFNIRRDIPMSFQYGERA
Ga0208042_11227051	3300027568	Peatlands Soil	MALLSFRGISTPSLPAQGEQRRFSYFNIQRDIPVQLPWHI
Ga0209106_11157971	3300027616	Forest Soil	MALLSFVGISTPSLPAQGEQRRSSIFNIPRDIPIDR
Ga0209117_10393321	3300027645	Forest Soil	MLDVFMALLSFRGIDTPSLPAQGEQRRSAYFNIGR
Ga0209388_10788851	3300027655	Vadose Zone Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDISNAGR
Ga0208565_10597642	3300027662	Peatlands Soil	MALLSSRGISTPSLQAQGEQRRSSYFNIHRDIALASAISFD
Ga0208696_10702661	3300027696	Peatlands Soil	MALLSSRGISTPSLQAQGEQRRSSYFNIHRDIASRSD
Ga0209447_102138802	3300027701	Bog Forest Soil	MALLSLRGFDTPSLPAQGGQRLLSYFNINRDIPLGFLKRLC
Ga0209328_100290944	3300027727	Forest Soil	MALLSSRGISTPSLQAQGKQRRSSYFNNDRDIAGVDRRDRH
Ga0209656_100332534	3300027812	Bog Forest Soil	MALLSFRGFDTPSLPAQGEQRRFSFFNIRRDIGYTGSRTA
Ga0209283_101369911	3300027875	Vadose Zone Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDISDESPR
Ga0209590_101457681	3300027882	Vadose Zone Soil	MVDLFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDISPLP
Ga0209067_101922161	3300027898	Watersheds	MALLSSRGISTPSLQAQGEQRRSSYFNNDRDIAPKGFN
Ga0209857_10149112	3300027957	Groundwater Sand	MALLLLRGFSTPSLLAQGEQRLPSYFNIDRDIPDL
Ga0255358_10105111	3300028069	Soil	MALLSSRGISTPSLPAQGEQRRSSIFNIPRDILIEAIA
Ga0302166_101118472	3300028652	Fen	MALLSFRGFDTPSLSAQGEQRRSTYFNIGRDIPAAIA
Ga0302165_102278841	3300028678	Fen	MALLSFRGFDTPSLSAQGEQRRSTYFNIGRDIPGAGWAIAT
Ga0307287_100525571	3300028796	Soil	MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPNIHST
Ga0307305_101213171	3300028807	Soil	MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPNDQSRI
Ga0307302_100786602	3300028814	Soil	MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPKL
Ga0307296_101204712	3300028819	Soil	MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPCND
Ga0302146_101244401	3300028867	Bog	MALLSSRGISTPSLPAQGEQRRSSIFNIPRDIPRQWIKNG
Ga0307308_100908851	3300028884	Soil	MVDVFMALLSFRGFDTPSPPAQGEQRRSTYFNIGRDIPGKHHG
Ga0239579_10086751	3300029442	Freshwater Lake	MALLSFHGFDTQSLQAQGQQRLPHIFNIQRDIPANDSAVCC
Ga0302175_100781471	3300030014	Fen	MALLSFRGFDTPSLSAQGEQRRSTYFNIGRDIPTQCL
Ga0311353_104513111	3300030399	Palsa	MALLSFVGISTPSLKAQGEQRRSFLFNIPRDIPPLLIDRELVAA
Ga0310039_104040052	3300030706	Peatlands Soil	MALLSFRGISTPSLQAQGEQRCSSYFNNDRDIAHI
Ga0308187_102441411	3300031114	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIDRDIPSLGA
Ga0307500_100190592	3300031198	Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPQ
Ga0307513_107132421	3300031456	Ectomycorrhiza	MVDVFMALLSSRGFDTPSLSAQGEQRRSTYFNNGRD
Ga0302320_114091412	3300031524	Bog	MALLSSRGISTPSLPAQGEQRRSSIFNIPRDIPELIAGFHILSN
Ga0265313_102483852	3300031595	Rhizosphere	VIGLFMALLSFRGISTPSLPAQGEQRRFSFFNIHRDIPVIKL
Ga0307468_1002980282	3300031740	Hardwood Forest Soil	MVDVFMALLSFCGFDTPSLPAQGEQRRSTYFNIARDIP
Ga0307468_1010945432	3300031740	Hardwood Forest Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPH
Ga0307477_101710631	3300031753	Hardwood Forest Soil	MALLSFVESSTPSLQAQGEQRRSFFFNIPRDNSHS
Ga0307475_102387791	3300031754	Hardwood Forest Soil	MVDVFMALLSFRGISTPSLPAQGEQRRSSLFNIGRDIPPK
Ga0307478_116245621	3300031823	Hardwood Forest Soil	MALLSFVESSTPSLQAQGEQRRSFFFNIPRDNSRA
Ga0326597_104222341	3300031965	Soil	MALLSFVGFDTPSLPAQGEQRLPHIFNIGRDIPVHNVQKTLSFAA
Ga0315540_100850561	3300032061	Salt Marsh Sediment	MALLSFVGFDTPSLPAQGEQRLPHIFNINRDIPRGTI
Ga0311301_104568781	3300032160	Peatlands Soil	MALLSFRGISTPSLPAQGEQRRFSYFNIQRDIPGYGLGKDS
Ga0307470_114043922	3300032174	Hardwood Forest Soil	MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPRWTYERG
Ga0307470_118831871	3300032174	Hardwood Forest Soil	MVDVFMALLSFCGFDTPSLPAQGEQRRSTYFNIAWDIPSAS
Ga0315276_103670392	3300032177	Sediment	MALLSFRGFDTPSLPAQGEQRRSSYFNINRDITRNW
Ga0315276_125597731	3300032177	Sediment	AAIVIDFFMALLSFRGFDTPSLPAQGEQRRSSYFNINRDITPWISSL
Ga0315275_104512591	3300032401	Sediment	MALLSFRGFDTPSLPAQGEQRRSSYFNINRDITTVE
Ga0315275_114835381	3300032401	Sediment	NAAAIVIDFFMALLSFRGFDTPSLPAQGEQRRSSYFNINRDIPHP
Ga0335077_119132772	3300033158	Soil	RLFMALLSFVESSTPSLQAQGEQRRSFFFNIPRDIS
Ga0214472_101679491	3300033407	Soil	VDFFMALLSFIGFDTPSLPAQGEQRLPHIFNIGRDIPSLDK
Ga0214472_103300892	3300033407	Soil	MALLSFRGFDTPSLPAQGEQRRSSYFNIDRDIPRRNVWT
Ga0364928_0015171_1349_1468	3300033813	Sediment	MALLLLRGFSTPSLLAQGEQRLPSYFNIRRDIPALNAEG
Ga0335028_0238072_995_1108	3300034071	Freshwater	FMALLASRGFDTPSLAAQGRQRRSRFLNIGRDIPELR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069724

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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