Basic Information | |
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Family ID | F069724 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 123 |
Average Sequence Length | 39 residues |
Representative Sequence | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIP |
Number of Associated Samples | 111 |
Number of Associated Scaffolds | 123 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 17.24 % |
% of genes near scaffold ends (potentially truncated) | 77.24 % |
% of genes from short scaffolds (< 2000 bps) | 86.99 % |
Associated GOLD sequencing projects | 104 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.28 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (57.724 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (13.008 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.642 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (44.715 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 16.67% β-sheet: 0.00% Coil/Unstructured: 83.33% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.28 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Freshwater Freshwater Lake Freshwater Lake Freshwater Lake Hypolimnion Sediment Bog Forest Soil Salt Marsh Sediment Wetland Watersheds Soil Soil Vadose Zone Soil Serpentine Soil Glacier Forefield Soil Peatlands Soil Arctic Peat Soil Soil Soil Grasslands Soil Hardwood Forest Soil Soil Soil Natural And Restored Wetlands Tropical Peatland Palsa Soil Forest Soil Groundwater Sand Soil Fen Palsa Bog Sediment Miscanthus Rhizosphere Ectomycorrhiza Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
beta3_all_00866560 | 2124908028 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPRIGQRPF |
B3_GZOS_CLC_02297100 | 2124908035 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSSYFNIGRDIPRIGQRPF |
WSSedL2TaDRAFT_10087711 | 3300000317 | Wetland | MALLSFRGIDTPSLQAQGEQRLPPIFNIQRDIPRA |
JGI12635J15846_106839272 | 3300001593 | Forest Soil | MLDVFMALLSFRGIDTPSLPAQGEQRRSAYFNIGRD |
JGI12053J15887_101154723 | 3300001661 | Forest Soil | MVDVFMALLSSRGFDTPSLSAQGEQRRSTYFNIGRDIPQND |
JGI26346J50198_10171922 | 3300003351 | Bog Forest Soil | MALLSLRGFDTPSLPAQGGQRLLSYFNINRDIPLQTHDAHA |
Ga0062385_100451583 | 3300004080 | Bog Forest Soil | MALLSLRGFDTPSLPAQGGQRLLSYFNINRDIPACTAKSDLR* |
Ga0066700_107718271 | 3300005559 | Soil | VLNLFMALLSFRGFDTPSLQAQGEQRRSSFFNIGRDIP |
Ga0066693_102581641 | 3300005566 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIDRDI |
Ga0066705_100262644 | 3300005569 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIP* |
Ga0066652_1003049862 | 3300006046 | Soil | AVVIMVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIP* |
Ga0099794_100743851 | 3300007265 | Vadose Zone Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDIS |
Ga0099828_102368751 | 3300009089 | Vadose Zone Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDISSET* |
Ga0099827_115376101 | 3300009090 | Vadose Zone Soil | ILFMALLSFRGIITPSLPAQGEQRRPSFFNIGRDIP* |
Ga0116220_102524822 | 3300009525 | Peatlands Soil | MALLSFRGISTPSLPAQGEQRRFSFFNIRRDIPMSFQYGERA* |
Ga0116220_105648021 | 3300009525 | Peatlands Soil | SFRGISTPSLPAQGEQRRFSYFNIQRDIPVQLPWHI* |
Ga0105072_10105952 | 3300009818 | Groundwater Sand | MALLLLRGFSTPSLLAQGEQRLPSYFNIDRDIPHESIG* |
Ga0126311_101156663 | 3300010045 | Serpentine Soil | MALLAPRGFSTPSLPAQGGQRRLLFLNIDRDIAGFPPDPPL* |
Ga0126306_101136443 | 3300010166 | Serpentine Soil | MALLSFRGIDTPSLPAQGEQRRPIYFNIDRDISGDF |
Ga0137389_100771512 | 3300012096 | Vadose Zone Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDISSLPTASR* |
Ga0137370_101074791 | 3300012285 | Vadose Zone Soil | MALLSSRGISTPSLQAQGEQRRFSYFNNHRDIAGSI |
Ga0137384_113847302 | 3300012357 | Vadose Zone Soil | MVDVFMVLLSFCGFDTPSLPAQGGQRLPSYFNIDRDIPE |
Ga0137361_115075522 | 3300012362 | Vadose Zone Soil | MALVIMLDVFMALLSFRGISTPSLPAQGEQRRLSDFNIDRDNPDERCGRLL* |
Ga0137373_102523571 | 3300012532 | Vadose Zone Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDISC* |
Ga0137359_102364054 | 3300012923 | Vadose Zone Soil | LNLFMALLSFRGISTPSLPAQGEQRRSFYFNIRRDILFSIP* |
Ga0137419_109992921 | 3300012925 | Vadose Zone Soil | MVDVFMALLSFCGFDTPSLPAQGEQRRSTYFNIGRDIPLGNAAA* |
Ga0075309_10099231 | 3300014268 | Natural And Restored Wetlands | MLDLFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDNSLPLR* |
Ga0182015_100466861 | 3300014495 | Palsa | IFMALLSSRGIITPSLTAQGEQRRSFFFNIPRDIPPTGARAI* |
Ga0182015_109629761 | 3300014495 | Palsa | LLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPIVQ* |
Ga0167645_1055371 | 3300015068 | Glacier Forefield Soil | MVDVFMALLSFRGFDTPSLSAQGEQRRFTYFNIGRDIPMSL |
Ga0137418_100865876 | 3300015241 | Vadose Zone Soil | HALPTGALGIALVIMVDVFMALLSFRGFDTPSLSAQGEQRRFTYFNIGRDIP* |
Ga0137418_105975271 | 3300015241 | Vadose Zone Soil | MALLSFRGFDTPSLSAQGEQRRSSYFNIRRDIPRR |
Ga0187767_102722852 | 3300017999 | Tropical Peatland | MALLSSRGISTPSLQAQGKQRRSSYFNNDWDIAKMK |
Ga0190272_125626762 | 3300018429 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPSAGLESL |
Ga0066667_101218232 | 3300018433 | Grasslands Soil | GIALIIMVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIP |
Ga0193715_10179591 | 3300019878 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIDRDIPESDYRLLMGSGM |
Ga0193723_10459481 | 3300019879 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPGC |
Ga0193727_11830391 | 3300019886 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDI |
Ga0193729_10665041 | 3300019887 | Soil | MALLSFRGISTPSLLAQGEQRRSSFFNIPRDIPLATP |
Ga0193718_10403722 | 3300019999 | Soil | MVDVFMALLSFRGFDTPSLSAQGEQRRFTYFNIGRDIP |
Ga0194111_105119662 | 3300020083 | Freshwater Lake | FMSLLSFRGISTPSLQAQGEQRRSSYFNIGRDIASRALISG |
Ga0187768_10203811 | 3300020150 | Tropical Peatland | MALLSSRGISTPSLQAQGEQRRSSYFNNDRDIATLNVLLSF |
Ga0187768_10205022 | 3300020150 | Tropical Peatland | MALLSFVESSTPSLQAQGEQRRSFFFNIPRDNSQAD |
Ga0179592_104446612 | 3300020199 | Vadose Zone Soil | AVAVVILVFMALLSFRGISTPSLSAQGEQRRPSFFNIRRDIP |
Ga0194126_102094781 | 3300020603 | Freshwater Lake | MALLSFRGFNTPSLPAQGEQRRSSYFNIDRDIPSR |
Ga0210378_100621682 | 3300021073 | Groundwater Sediment | MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPVTVLARRI |
Ga0210381_101623062 | 3300021078 | Groundwater Sediment | MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPPNMN |
Ga0210379_100675651 | 3300021081 | Groundwater Sediment | MALLSFRGISTPSLPAQGEQRRSFYFNIRRDIPKRAG |
Ga0210379_102216271 | 3300021081 | Groundwater Sediment | MVDVFMALLSFRGFDTPSLQAQGEQRRSTYFNIGRDIPSLDPGS |
Ga0210379_102338212 | 3300021081 | Groundwater Sediment | LVIMVDVFMALLSFRGFDTPSLQAQGEQRRSTYFNIGRDIPHGPR |
Ga0193719_100760141 | 3300021344 | Soil | MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPCFGGSNL |
Ga0224557_10725031 | 3300023101 | Soil | MALLSFRGISTPSLQAQGEQRRSSYFNNDRDIASMRSPR |
Ga0209697_100907681 | 3300025316 | Freshwater Lake Hypolimnion | MALLSFRGFDTPSLQAQGEQRLLYNFNIDRDISYGPRVAPYWQRG |
Ga0208586_10084913 | 3300025588 | Arctic Peat Soil | MVDVFMALLSFRGISTPSLSAQGEQRRSTYFNIGREYVMQS |
Ga0208220_10275613 | 3300025627 | Arctic Peat Soil | MVDVFMALLSFRGISTPSLSAQGEQRRSTYFNIGRDIPI |
Ga0208849_10408362 | 3300025664 | Arctic Peat Soil | MVDVFMALLSFRGISTPSLSAQGEQRRSTYFNIGRDIPR |
Ga0208002_10114781 | 3300026029 | Natural And Restored Wetlands | MLDLFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDNS |
Ga0208535_10042991 | 3300026045 | Natural And Restored Wetlands | MLDLFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDNSQPRP |
Ga0208780_10181041 | 3300026046 | Natural And Restored Wetlands | MLDLFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDNSN |
Ga0207648_102967751 | 3300026089 | Miscanthus Rhizosphere | MVDVFMALLSFRGISTPSLPAQGEQRRSSYFNIPRGNSALCYHQDIQVTV |
Ga0209155_10623833 | 3300026316 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIDRDIPFS |
Ga0209471_11080822 | 3300026318 | Soil | MVGVFMALLSFRGFDTPSLPAQGEQRRSTYFNIDRDIPRAEMA |
Ga0247847_10256132 | 3300026450 | Soil | MALLSSRGISTPSLPAQGEQRRSSIFNIPRDILEAISS |
Ga0208126_10009152 | 3300026843 | Soil | MALLLLRGFSTPSLLAQGEQRLPSFFNIRRDIPLMIFPD |
Ga0208892_10007642 | 3300026850 | Soil | MALLLLRGFSTPSLLAQGEQRLPSYFNIRRDIPYCA |
Ga0208889_10099642 | 3300026891 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIP |
Ga0208520_10016301 | 3300026912 | Soil | MALLSFRGFGTPSLPAQGEQRRSTYFNIGRDIPRP |
Ga0208761_10012671 | 3300026995 | Soil | MALLLLRGFSTPSLLAQGEQRLPSFFNIRRDIPACG |
Ga0209876_10246692 | 3300027041 | Groundwater Sand | MALLLLRGFSTPSLLAQGEQRLPSYFNIDRDIPMIWHSS |
Ga0209524_10091121 | 3300027521 | Forest Soil | MALLSSRGISTPSLQAQGEQRRSSYFNNHQDIADF |
Ga0208890_10308922 | 3300027523 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPS |
Ga0209887_10222073 | 3300027561 | Groundwater Sand | MALLLLRGFSTPSLLAQGEQRLPSYFNIDRDIPARK |
Ga0208042_10984752 | 3300027568 | Peatlands Soil | MALLSFRGISTPSLPAQGEQRRFSFFNIRRDIPMSFQYGERA |
Ga0208042_11227051 | 3300027568 | Peatlands Soil | MALLSFRGISTPSLPAQGEQRRFSYFNIQRDIPVQLPWHI |
Ga0209106_11157971 | 3300027616 | Forest Soil | MALLSFVGISTPSLPAQGEQRRSSIFNIPRDIPIDR |
Ga0209117_10393321 | 3300027645 | Forest Soil | MLDVFMALLSFRGIDTPSLPAQGEQRRSAYFNIGR |
Ga0209388_10788851 | 3300027655 | Vadose Zone Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDISNAGR |
Ga0208565_10597642 | 3300027662 | Peatlands Soil | MALLSSRGISTPSLQAQGEQRRSSYFNIHRDIALASAISFD |
Ga0208696_10702661 | 3300027696 | Peatlands Soil | MALLSSRGISTPSLQAQGEQRRSSYFNIHRDIASRSD |
Ga0209447_102138802 | 3300027701 | Bog Forest Soil | MALLSLRGFDTPSLPAQGGQRLLSYFNINRDIPLGFLKRLC |
Ga0209328_100290944 | 3300027727 | Forest Soil | MALLSSRGISTPSLQAQGKQRRSSYFNNDRDIAGVDRRDRH |
Ga0209656_100332534 | 3300027812 | Bog Forest Soil | MALLSFRGFDTPSLPAQGEQRRFSFFNIRRDIGYTGSRTA |
Ga0209283_101369911 | 3300027875 | Vadose Zone Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDISDESPR |
Ga0209590_101457681 | 3300027882 | Vadose Zone Soil | MVDLFMALLSFRGFDTPSLPAQGEQRRSFYFNIDRDISPLP |
Ga0209067_101922161 | 3300027898 | Watersheds | MALLSSRGISTPSLQAQGEQRRSSYFNNDRDIAPKGFN |
Ga0209857_10149112 | 3300027957 | Groundwater Sand | MALLLLRGFSTPSLLAQGEQRLPSYFNIDRDIPDL |
Ga0255358_10105111 | 3300028069 | Soil | MALLSSRGISTPSLPAQGEQRRSSIFNIPRDILIEAIA |
Ga0302166_101118472 | 3300028652 | Fen | MALLSFRGFDTPSLSAQGEQRRSTYFNIGRDIPAAIA |
Ga0302165_102278841 | 3300028678 | Fen | MALLSFRGFDTPSLSAQGEQRRSTYFNIGRDIPGAGWAIAT |
Ga0307287_100525571 | 3300028796 | Soil | MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPNIHST |
Ga0307305_101213171 | 3300028807 | Soil | MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPNDQSRI |
Ga0307302_100786602 | 3300028814 | Soil | MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPKL |
Ga0307296_101204712 | 3300028819 | Soil | MALLSLRGFDTPSLTAQGGQRLPFYFNIDRDIPCND |
Ga0302146_101244401 | 3300028867 | Bog | MALLSSRGISTPSLPAQGEQRRSSIFNIPRDIPRQWIKNG |
Ga0307308_100908851 | 3300028884 | Soil | MVDVFMALLSFRGFDTPSPPAQGEQRRSTYFNIGRDIPGKHHG |
Ga0239579_10086751 | 3300029442 | Freshwater Lake | MALLSFHGFDTQSLQAQGQQRLPHIFNIQRDIPANDSAVCC |
Ga0302175_100781471 | 3300030014 | Fen | MALLSFRGFDTPSLSAQGEQRRSTYFNIGRDIPTQCL |
Ga0311353_104513111 | 3300030399 | Palsa | MALLSFVGISTPSLKAQGEQRRSFLFNIPRDIPPLLIDRELVAA |
Ga0310039_104040052 | 3300030706 | Peatlands Soil | MALLSFRGISTPSLQAQGEQRCSSYFNNDRDIAHI |
Ga0308187_102441411 | 3300031114 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIDRDIPSLGA |
Ga0307500_100190592 | 3300031198 | Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPQ |
Ga0307513_107132421 | 3300031456 | Ectomycorrhiza | MVDVFMALLSSRGFDTPSLSAQGEQRRSTYFNNGRD |
Ga0302320_114091412 | 3300031524 | Bog | MALLSSRGISTPSLPAQGEQRRSSIFNIPRDIPELIAGFHILSN |
Ga0265313_102483852 | 3300031595 | Rhizosphere | VIGLFMALLSFRGISTPSLPAQGEQRRFSFFNIHRDIPVIKL |
Ga0307468_1002980282 | 3300031740 | Hardwood Forest Soil | MVDVFMALLSFCGFDTPSLPAQGEQRRSTYFNIARDIP |
Ga0307468_1010945432 | 3300031740 | Hardwood Forest Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPH |
Ga0307477_101710631 | 3300031753 | Hardwood Forest Soil | MALLSFVESSTPSLQAQGEQRRSFFFNIPRDNSHS |
Ga0307475_102387791 | 3300031754 | Hardwood Forest Soil | MVDVFMALLSFRGISTPSLPAQGEQRRSSLFNIGRDIPPK |
Ga0307478_116245621 | 3300031823 | Hardwood Forest Soil | MALLSFVESSTPSLQAQGEQRRSFFFNIPRDNSRA |
Ga0326597_104222341 | 3300031965 | Soil | MALLSFVGFDTPSLPAQGEQRLPHIFNIGRDIPVHNVQKTLSFAA |
Ga0315540_100850561 | 3300032061 | Salt Marsh Sediment | MALLSFVGFDTPSLPAQGEQRLPHIFNINRDIPRGTI |
Ga0311301_104568781 | 3300032160 | Peatlands Soil | MALLSFRGISTPSLPAQGEQRRFSYFNIQRDIPGYGLGKDS |
Ga0307470_114043922 | 3300032174 | Hardwood Forest Soil | MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIPRWTYERG |
Ga0307470_118831871 | 3300032174 | Hardwood Forest Soil | MVDVFMALLSFCGFDTPSLPAQGEQRRSTYFNIAWDIPSAS |
Ga0315276_103670392 | 3300032177 | Sediment | MALLSFRGFDTPSLPAQGEQRRSSYFNINRDITRNW |
Ga0315276_125597731 | 3300032177 | Sediment | AAIVIDFFMALLSFRGFDTPSLPAQGEQRRSSYFNINRDITPWISSL |
Ga0315275_104512591 | 3300032401 | Sediment | MALLSFRGFDTPSLPAQGEQRRSSYFNINRDITTVE |
Ga0315275_114835381 | 3300032401 | Sediment | NAAAIVIDFFMALLSFRGFDTPSLPAQGEQRRSSYFNINRDIPHP |
Ga0335077_119132772 | 3300033158 | Soil | RLFMALLSFVESSTPSLQAQGEQRRSFFFNIPRDIS |
Ga0214472_101679491 | 3300033407 | Soil | VDFFMALLSFIGFDTPSLPAQGEQRLPHIFNIGRDIPSLDK |
Ga0214472_103300892 | 3300033407 | Soil | MALLSFRGFDTPSLPAQGEQRRSSYFNIDRDIPRRNVWT |
Ga0364928_0015171_1349_1468 | 3300033813 | Sediment | MALLLLRGFSTPSLLAQGEQRLPSYFNIRRDIPALNAEG |
Ga0335028_0238072_995_1108 | 3300034071 | Freshwater | FMALLASRGFDTPSLAAQGRQRRSRFLNIGRDIPELR |
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