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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026878 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0099864 | Gp0111016 | Ga0208891 |
| Sample Name | Soil and rhizosphere microbial communities from Laval, Canada - mgHPC (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 40933453 |
| Sequencing Scaffolds | 38 |
| Novel Protein Genes | 38 |
| Associated Families | 38 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria | 7 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19 | 1 |
| All Organisms → cellular organisms → Archaea | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11 | 1 |
| Not Available | 16 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → rhizosphere → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Laval, Canada | |||||||
| Coordinates | Lat. (o) | 45.54 | Long. (o) | -73.72 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000708 | Metagenome / Metatranscriptome | 926 | Y |
| F000816 | Metagenome / Metatranscriptome | 879 | Y |
| F001213 | Metagenome / Metatranscriptome | 746 | Y |
| F008463 | Metagenome / Metatranscriptome | 333 | Y |
| F008521 | Metagenome / Metatranscriptome | 332 | Y |
| F009014 | Metagenome / Metatranscriptome | 324 | Y |
| F009106 | Metagenome / Metatranscriptome | 323 | Y |
| F010102 | Metagenome | 308 | Y |
| F010126 | Metagenome / Metatranscriptome | 308 | Y |
| F014990 | Metagenome / Metatranscriptome | 258 | Y |
| F015672 | Metagenome / Metatranscriptome | 253 | Y |
| F021978 | Metagenome / Metatranscriptome | 216 | Y |
| F023582 | Metagenome / Metatranscriptome | 209 | N |
| F025734 | Metagenome / Metatranscriptome | 200 | Y |
| F026365 | Metagenome / Metatranscriptome | 198 | Y |
| F026382 | Metagenome / Metatranscriptome | 198 | N |
| F028652 | Metagenome / Metatranscriptome | 191 | Y |
| F031146 | Metagenome / Metatranscriptome | 183 | N |
| F033023 | Metagenome / Metatranscriptome | 178 | N |
| F033192 | Metagenome / Metatranscriptome | 178 | Y |
| F036222 | Metagenome / Metatranscriptome | 170 | Y |
| F038255 | Metagenome / Metatranscriptome | 166 | Y |
| F043551 | Metagenome | 156 | N |
| F045188 | Metagenome / Metatranscriptome | 153 | Y |
| F046352 | Metagenome / Metatranscriptome | 151 | Y |
| F048397 | Metagenome / Metatranscriptome | 148 | N |
| F050357 | Metagenome / Metatranscriptome | 145 | N |
| F051250 | Metagenome / Metatranscriptome | 144 | N |
| F051443 | Metagenome / Metatranscriptome | 144 | Y |
| F056108 | Metagenome / Metatranscriptome | 138 | Y |
| F058980 | Metagenome / Metatranscriptome | 134 | N |
| F069213 | Metagenome / Metatranscriptome | 124 | N |
| F070085 | Metagenome / Metatranscriptome | 123 | Y |
| F073765 | Metagenome / Metatranscriptome | 120 | N |
| F081571 | Metagenome / Metatranscriptome | 114 | Y |
| F086219 | Metagenome / Metatranscriptome | 111 | N |
| F087961 | Metagenome | 110 | Y |
| F088861 | Metagenome / Metatranscriptome | 109 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208891_1000007 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3134 | Open in IMG/M |
| Ga0208891_1000067 | All Organisms → cellular organisms → Bacteria | 1796 | Open in IMG/M |
| Ga0208891_1000376 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1191 | Open in IMG/M |
| Ga0208891_1000406 | All Organisms → cellular organisms → Bacteria | 1168 | Open in IMG/M |
| Ga0208891_1000407 | All Organisms → cellular organisms → Bacteria | 1167 | Open in IMG/M |
| Ga0208891_1000643 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1023 | Open in IMG/M |
| Ga0208891_1000661 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1017 | Open in IMG/M |
| Ga0208891_1000675 | All Organisms → cellular organisms → Bacteria | 1012 | Open in IMG/M |
| Ga0208891_1001004 | All Organisms → cellular organisms → Bacteria | 899 | Open in IMG/M |
| Ga0208891_1001046 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19 | 889 | Open in IMG/M |
| Ga0208891_1001062 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 884 | Open in IMG/M |
| Ga0208891_1001358 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 815 | Open in IMG/M |
| Ga0208891_1001526 | All Organisms → cellular organisms → Archaea | 787 | Open in IMG/M |
| Ga0208891_1001564 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11 | 779 | Open in IMG/M |
| Ga0208891_1001577 | Not Available | 778 | Open in IMG/M |
| Ga0208891_1001740 | Not Available | 757 | Open in IMG/M |
| Ga0208891_1002182 | All Organisms → cellular organisms → Archaea | 709 | Open in IMG/M |
| Ga0208891_1002454 | Not Available | 685 | Open in IMG/M |
| Ga0208891_1002499 | Not Available | 680 | Open in IMG/M |
| Ga0208891_1002605 | Not Available | 671 | Open in IMG/M |
| Ga0208891_1003102 | Not Available | 636 | Open in IMG/M |
| Ga0208891_1003279 | Not Available | 625 | Open in IMG/M |
| Ga0208891_1003402 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia | 619 | Open in IMG/M |
| Ga0208891_1003526 | All Organisms → cellular organisms → Bacteria | 612 | Open in IMG/M |
| Ga0208891_1003882 | All Organisms → cellular organisms → Archaea | 594 | Open in IMG/M |
| Ga0208891_1003921 | All Organisms → cellular organisms → Bacteria | 593 | Open in IMG/M |
| Ga0208891_1004258 | Not Available | 579 | Open in IMG/M |
| Ga0208891_1004459 | Not Available | 571 | Open in IMG/M |
| Ga0208891_1004599 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter | 566 | Open in IMG/M |
| Ga0208891_1005112 | Not Available | 549 | Open in IMG/M |
| Ga0208891_1005120 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 549 | Open in IMG/M |
| Ga0208891_1005295 | Not Available | 543 | Open in IMG/M |
| Ga0208891_1005508 | Not Available | 537 | Open in IMG/M |
| Ga0208891_1005802 | Not Available | 528 | Open in IMG/M |
| Ga0208891_1006322 | Not Available | 515 | Open in IMG/M |
| Ga0208891_1006686 | Not Available | 506 | Open in IMG/M |
| Ga0208891_1006707 | Not Available | 506 | Open in IMG/M |
| Ga0208891_1006897 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208891_1000007 | Ga0208891_10000073 | F081571 | ILHYGWDGNLASMVDGTKIEAQAAAVGYVFVSWFSAGADSSRNFW |
| Ga0208891_1000067 | Ga0208891_10000672 | F000708 | MTKPDLALSQIAARFTQHDVEWSRGAFMIIDRRTTNPIARLRPIPDTDRFELFYWSNAKGRWTTFGNFGRMKLMLESAHEIVESDPMFRIP |
| Ga0208891_1000376 | Ga0208891_10003763 | F036222 | MSTDRYRAPTEPDQDAYEDAWYRALKAKASRRSADPKDDTTDDPQAPVSSSPPAQNEGDAGAR |
| Ga0208891_1000406 | Ga0208891_10004061 | F028652 | AGAGTAIKRGTYSGKTDQDAVATGFRRIQFTVSKGKVTLTTEPIVARGLCLSTDVFTQEGTSSKKLGRNRTFTLTHTFFGSKIDKIHGRFVSSNEVEGYAIYHFFAQDLCLEGKTKVNFKAKHK |
| Ga0208891_1000407 | Ga0208891_10004072 | F008521 | MDAKNQKPNLRSEKIQSTNFLIWIISGLYLLPMVWFLLSTMVAYGAHETEPWLVPTVAALTVSYGILMLLLWPQEKVSPRSTS |
| Ga0208891_1000643 | Ga0208891_10006432 | F010102 | VAELRTWAPTVTSVLASAEACDRVGDLPGACRVSPGEVALVGDVSEAAVAAAVVRLDPDAVVLDVSDGWGAHSLDGPGSREAFARLSELELPMAGSLVGEAAGVGVRILVDRDRIDLLVPSMVSAHVRERIETDCAELLR |
| Ga0208891_1000661 | Ga0208891_10006611 | F025734 | VAHEAIPAYLEQIDELLASPSSADEYEPAALARLERTLTDGYAHALSLEAEQIRLERRMSELAGELNEGNQEQKAEELVQVSRRISRARAELERLRGTLSRLRARATHVRST |
| Ga0208891_1000675 | Ga0208891_10006752 | F069213 | FSSYLETAMAEMAPGIEDKRTLFSLRQLITALRAPVTPKPVQ |
| Ga0208891_1001004 | Ga0208891_10010042 | F031146 | LCAKSGDEPDDRGRKRHGQIADATDPCGDTNFESANFGYCLLVPDGWEAGPAQFGADVTLDQFAPPTGSATVVVEAVDLETGVELDQWSEFVRQRDEDAGLTPGPASEARLDGADALQWDVSVASEGGDTFLMREVVTVSNDVGWRVTLNDLQDGFDTSAVAFRDMLDSWQFA |
| Ga0208891_1001046 | Ga0208891_10010461 | F051250 | MTSSRFMWLVVAGRGHSSEQRGFTENLDDSKAKVNEHAERLRREGRTDWFGFVLDLDRPTVIASPTPGTPPILGWERVYFADGRK |
| Ga0208891_1001062 | Ga0208891_10010621 | F009014 | MGVGRKSPGAVMAYDPAVRWRARAWALVAYLAVLAAVAGIVLFALRYQPLSAANFASESVAQSDSKMVRVGYENGGAFSFGFLVVNDGPLPVKIQRIEVTGQSDLLVTVGLETAANRYAGSLGQGDPSLDKFLPFTLAGGDRRWIAVRTRFGNCGRFAAGASETYTRFKVTYSVLGFTKHAWVPL |
| Ga0208891_1001358 | Ga0208891_10013582 | F051443 | VEPAHVVKAVDEAGLRLVRFLWCGNDGTVRGTADARERCTGH |
| Ga0208891_1001526 | Ga0208891_10015261 | F048397 | ILEKNKCDKCNLTIHPNFIGYHKCDHQNCPICKSPIFPSQYWFHIRSHPGHENDSPPPPKERTFENRGNPNHHSGYGNYRRN |
| Ga0208891_1001564 | Ga0208891_10015642 | F073765 | LIGKIPIKGQKVVEEVYLSEQIQCCECQKTVPIGVEVVTVQKDGPSKKVVKRAFYCRSHSGEYESRARGEG |
| Ga0208891_1001577 | Ga0208891_10015771 | F023582 | MLKSVLRATALLAVALIPSASALAADDDAKIVEGLPPEVADVVTGGSWSEGKQGGFYRAIVVMSGTEQSFGARVYLQWLALSETDPVPKIVATAPIKEVNDQKLGNASIEIEGEETKDNQITIIVSSYDFDADKDITLYVKGTAPGKYAMAK |
| Ga0208891_1001740 | Ga0208891_10017402 | F015672 | MDELHEKHVEIDERWLSEWFEFGFAELSSYLAKHAAFNEYLHKNEID |
| Ga0208891_1002182 | Ga0208891_10021821 | F010126 | KGPASFSIPSMKSSIRSLMVCTCICTAALLLIIIESQTAIAIDTPLSNMSGTNYGFQLESNVTNRTSSDQIAYRNPQYGIFLLFPSNWTFSTSGLPEYTQIAGFYAPLQNLSDPIPARFTISVMSYQQNVSLKDFTNVTLSSLNQTNQIKILSSGATTLAGRPGYQVIFSTLPNMGNPVSFEIMHSWTAVDNKIYVFQYSVESSKFDTYLPTVKQILGSLRINGIG |
| Ga0208891_1002454 | Ga0208891_10024542 | F009106 | MKRTILAAFERWKSALIDQDKQTTQAARHRAHARVTSMEDLIAETPADDVEGVGIKLALYVYMSGVDPETADSAVEQVLSAYKDCVCVLGCDLLAEVKSLMPASQQSV |
| Ga0208891_1002499 | Ga0208891_10024991 | F058980 | MSARVESPPIGGGTLGGSFVIAVVVALSIGAFVGSLVTYAIDSDGGTSPTFVARGTPALTAVDVGYGSKAIEGPMLAERFSGLGSAVVWDAGKLEAMEGRQLAEQFRSEAGSAVVWDAGKLEAMEGRQLAEQFRSEAG |
| Ga0208891_1002605 | Ga0208891_10026052 | F033192 | MTTTRFPTLLVLPATLWLAVSLGDENCSITRPGGVKEPGVTNVKGECCSSFYSNSGNADDCVPPTPDRPDGAKFYTSVSKD |
| Ga0208891_1003102 | Ga0208891_10031021 | F014990 | MGLKDLQDDVEYCQVHGEASGPIGDEAPCPLPHARARCPVCSLGWIGPGPNDSVVLCILTRHIVETHPHTAHATTLRFNAVQVGGSANPDEWCHHEPEQHRRVNVLKPTL |
| Ga0208891_1003279 | Ga0208891_10032792 | F088861 | MRQPSWSGWASIRSNLPRGAGVPLLVAVAIMASLGWVLLARGMFPADGTVTFPSAPYWSERGVVINKLLQGASGLRVGDCVVAVDGRPLEELVRNGPVRTYTVGDVIRYDVRRSDASLDRDCSGPLASVEVTLTAYR |
| Ga0208891_1003402 | Ga0208891_10034022 | F070085 | RGNGLALAWWAGSEAVDLDAAGDVDDAGLIFFAGGEVADLLGGSWAGPVGPVADEEARVEDLEQEGGDGQVKVLRGENPP |
| Ga0208891_1003526 | Ga0208891_10035261 | F021978 | AEAERLARSTRRSKAAESRSVTRRIGRAALAAATWPVKH |
| Ga0208891_1003882 | Ga0208891_10038822 | F087961 | LFSNSHSLKLEETAKGVRISVHVYTNEKQTAINEAIATYLETKQMCEKEKIQIAPMEKSK |
| Ga0208891_1003921 | Ga0208891_10039212 | F008463 | MTRDGTVGRSDATERNLPLHRGIDPVRMMRTRFADPIRASSPSGLHQQAGHMTA |
| Ga0208891_1004258 | Ga0208891_10042582 | F046352 | VDLSRTPTRGELQRALNVRLQALGAIRALEQPEQDAVMASTFLSAFAETNASITRLEKAIGGGDHEVSRALRSLRGDVRHERELAVRAGIAGCGGLAIR |
| Ga0208891_1004459 | Ga0208891_10044591 | F038255 | AMPGKVEAAAALAVFAPMSAVSMTLCTTAFAWLLTRRLIDPLYRTVLIPGFGVFGLLFGAWYVGIG |
| Ga0208891_1004599 | Ga0208891_10045992 | F000816 | MGFVKNTQPHRMRKASKRVLLGETREEEAARLEREIAAHPVTRCEPGECSPSSSRPGWSNKPFIPLSERTVAEGIAKKILRKP |
| Ga0208891_1005112 | Ga0208891_10051122 | F086219 | MNRSAQDGEWSSPHYGGEGDWVPLRRTKVFAGDTVGKSVSDSGRPGIVRRAGMAGIVRHSQTKGRATANANPSLEPPSVGGGYKRERNSGRRGVR |
| Ga0208891_1005120 | Ga0208891_10051203 | F001213 | WFRVEGEDVPVRVGSFLRFDPGTTRVAIAGPEGMTMIGVGARHGSYEPRGPF |
| Ga0208891_1005295 | Ga0208891_10052951 | F043551 | MTYQLEEPFFEEKGKITAQKEIGDNKTQMSFSSNGTFKGNIEVTNSGDFVSLS |
| Ga0208891_1005508 | Ga0208891_10055081 | F050357 | VEGIRLWRANRQKLVGMVYLDKGVIDLDIQDDHERALVEEVFEQTGQVTWSFSRFDEGEWQENIAEPRTERWLWFVVANILYPMGYQADLGISEFGEPTTG |
| Ga0208891_1005802 | Ga0208891_10058022 | F026365 | VRRLIASLYAVALTLALPVAAFAASSTDTGKPTGHDWTLDSIFVIALSIPLILGFLTLIDIARGKHTQRHDH |
| Ga0208891_1006322 | Ga0208891_10063223 | F033023 | VVGGVIGYLVARELTKQDPDDDRPPGVREAMARHPSNRIAVHGRRIAEKAGWKSVEAIQRARANIQRR |
| Ga0208891_1006686 | Ga0208891_10066862 | F045188 | MGSVGIVLTILVVALLWVAAVAFGGDSREDGDRRSGCDRPDRPLRL |
| Ga0208891_1006707 | Ga0208891_10067071 | F026382 | IYVPDDLAELVRHYGLSVSEVAQAALREAVNESGRHFRRELAYVVLEHVKWREVVAGNYPDDPRNRQAVAALRALAEYILALEPDDSRLVHLRDSAEHAKQLDSYVPETGEACGNWGRTLGSYGFYQDCTPEEGLRKLTEASDKDDAEWAALGGDVLAEVTRSVARSL |
| Ga0208891_1006897 | Ga0208891_10068971 | F056108 | VPNDMQEAVALAHLSVATGSGDDDEEVSIGWPAVSDGMPRLLPVPSAWWETPAVTTRALSARPEEA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |