Metagenome / Metatranscriptome Family F073765

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073765
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	72 residues
Representative Sequence	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG
Number of Associated Samples	98
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	62.50 %
% of genes near scaffold ends (potentially truncated)	40.00 %
% of genes from short scaffolds (< 2000 bps)	76.67 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.667 % of family members)
Environment Ontology (ENVO)	Unclassified (28.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.16% β-sheet: 33.78% Coil/Unstructured: 54.05%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF11367	DUF3168	36.67
PF00072	Response_reg	11.67
PF05521	Phage_H_T_join	7.50
PF06199	Phage_tail_2	2.50
PF01042	Ribonuc_L-PSP	1.67
PF13545	HTH_Crp_2	1.67
PF05135	Phage_connect_1	1.67
PF04586	Peptidase_S78	1.67
PF00089	Trypsin	1.67
PF14378	PAP2_3	1.67
PF07394	DUF1501	0.83
PF13596	PAS_10	0.83
PF13505	OMP_b-brl	0.83
PF00484	Pro_CA	0.83
PF01053	Cys_Met_Meta_PP	0.83
PF09550	Phage_TAC_6	0.83
PF09990	DUF2231	0.83
PF11836	Phage_TAC_11	0.83
PF00534	Glycos_transf_1	0.83
PF13432	TPR_16	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.67
COG3740	Phage head maturation protease	Mobilome: prophages, transposons [X]	1.67
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.83
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.83
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.83
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.83
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.83
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.83
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.83
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.83
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.83
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.83
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.67 %
Unclassified	root	N/A	18.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.67 %
Unclassified	root	N/A	18.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.67 %
Unclassified	root	N/A	18.33 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	77.50 %
Unclassified	root	N/A	18.33 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	74.17 %
Unclassified	root	N/A	18.33 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	25.83 %
Unclassified	root	N/A	18.33 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.83 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.33 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.33 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	5.83 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.83 %
Actinobacteria bacterium 13_1_20CM_3_71_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.33 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.33 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	5.83 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.83 %
Actinobacteria bacterium 13_1_20CM_3_71_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.33 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.33 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	5.83 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.83 %
Actinobacteria bacterium 13_1_20CM_3_71_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.33 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.33 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	5.83 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.83 %
Actinobacteria bacterium 13_1_20CM_3_71_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_14199964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1007	Open in IMG/M
2162886013\|SwBSRL2_contig_8566676	Not Available	854	Open in IMG/M
3300000041\|ARcpr5oldR_c000033	All Organisms → cellular organisms → Bacteria → Proteobacteria	27450	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105176092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	870	Open in IMG/M
3300000881\|JGI10215J12807_1057269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	829	Open in IMG/M
3300000881\|JGI10215J12807_1463894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300000890\|JGI11643J12802_11054743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300001978\|JGI24747J21853_1000670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2266	Open in IMG/M
3300003324\|soilH2_10176601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3468	Open in IMG/M
3300003371\|JGI26145J50221_1028912	Not Available	561	Open in IMG/M
3300004114\|Ga0062593_102081117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	633	Open in IMG/M
3300004114\|Ga0062593_102151727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	624	Open in IMG/M
3300004156\|Ga0062589_100031544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2710	Open in IMG/M
3300004156\|Ga0062589_100046924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2380	Open in IMG/M
3300004156\|Ga0062589_100545221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	991	Open in IMG/M
3300004479\|Ga0062595_101545159	Not Available	615	Open in IMG/M
3300004480\|Ga0062592_102528471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300005093\|Ga0062594_100020781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2746	Open in IMG/M
3300005103\|Ga0066813_1009329	Not Available	585	Open in IMG/M
3300005159\|Ga0066808_1007369	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300005165\|Ga0066869_10149538	Not Available	504	Open in IMG/M
3300005206\|Ga0068995_10031561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	882	Open in IMG/M
3300005332\|Ga0066388_100127604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3081	Open in IMG/M
3300005332\|Ga0066388_101309291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1250	Open in IMG/M
3300005336\|Ga0070680_100037042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3941	Open in IMG/M
3300005337\|Ga0070682_100106707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1859	Open in IMG/M
3300005337\|Ga0070682_100562626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	894	Open in IMG/M
3300005347\|Ga0070668_100791579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	842	Open in IMG/M
3300005367\|Ga0070667_100000466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	41622	Open in IMG/M
3300005440\|Ga0070705_100866045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300005467\|Ga0070706_101290318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	670	Open in IMG/M
3300005529\|Ga0070741_10012091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15710	Open in IMG/M
3300005536\|Ga0070697_100168816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1851	Open in IMG/M
3300005544\|Ga0070686_100465787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	974	Open in IMG/M
3300005545\|Ga0070695_100751539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	778	Open in IMG/M
3300005547\|Ga0070693_100869965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	673	Open in IMG/M
3300005547\|Ga0070693_101505855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300005564\|Ga0070664_100727818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	925	Open in IMG/M
3300005578\|Ga0068854_100236809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1452	Open in IMG/M
3300005713\|Ga0066905_101741948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300005713\|Ga0066905_102216183	Not Available	512	Open in IMG/M
3300005713\|Ga0066905_102216184	Not Available	512	Open in IMG/M
3300005937\|Ga0081455_10001954	All Organisms → cellular organisms → Bacteria	24756	Open in IMG/M
3300006058\|Ga0075432_10086034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1145	Open in IMG/M
3300006186\|Ga0075369_10241820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	837	Open in IMG/M
3300006581\|Ga0074048_13488448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2551	Open in IMG/M
3300006755\|Ga0079222_10562351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	858	Open in IMG/M
3300006755\|Ga0079222_12299323	Not Available	538	Open in IMG/M
3300006852\|Ga0075433_10932169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	757	Open in IMG/M
3300006854\|Ga0075425_100202237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2283	Open in IMG/M
3300006854\|Ga0075425_101248866	Not Available	843	Open in IMG/M
3300006871\|Ga0075434_100112646	All Organisms → cellular organisms → Bacteria	2732	Open in IMG/M
3300006954\|Ga0079219_10092405	All Organisms → cellular organisms → Bacteria → Proteobacteria	1459	Open in IMG/M
3300009098\|Ga0105245_10436331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1315	Open in IMG/M
3300009162\|Ga0075423_12098429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300010047\|Ga0126382_10030769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2941	Open in IMG/M
3300010047\|Ga0126382_11339974	Not Available	649	Open in IMG/M
3300010047\|Ga0126382_11649011	Not Available	597	Open in IMG/M
3300010359\|Ga0126376_12355843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	579	Open in IMG/M
3300010359\|Ga0126376_12645522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300010362\|Ga0126377_10424398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1346	Open in IMG/M
3300010371\|Ga0134125_10335426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1678	Open in IMG/M
3300010371\|Ga0134125_11444673	Not Available	749	Open in IMG/M
3300010373\|Ga0134128_10579690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1249	Open in IMG/M
3300010373\|Ga0134128_11246659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	820	Open in IMG/M
3300010396\|Ga0134126_11442367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	760	Open in IMG/M
3300010400\|Ga0134122_10554672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1052	Open in IMG/M
3300012498\|Ga0157345_1048724	Not Available	533	Open in IMG/M
3300012884\|Ga0157300_1032192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	753	Open in IMG/M
3300012896\|Ga0157303_10001109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3626	Open in IMG/M
3300012896\|Ga0157303_10009013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1464	Open in IMG/M
3300012898\|Ga0157293_10002036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2373	Open in IMG/M
3300012900\|Ga0157292_10362443	Not Available	539	Open in IMG/M
3300012901\|Ga0157288_10002039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2570	Open in IMG/M
3300012909\|Ga0157290_10173958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	710	Open in IMG/M
3300012909\|Ga0157290_10440844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300012911\|Ga0157301_10021295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1435	Open in IMG/M
3300012943\|Ga0164241_11408399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300013096\|Ga0157307_1011577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1369	Open in IMG/M
3300014745\|Ga0157377_10817308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	689	Open in IMG/M
3300015371\|Ga0132258_10050435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9515	Open in IMG/M
3300015372\|Ga0132256_100058048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3621	Open in IMG/M
3300015372\|Ga0132256_100554789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1262	Open in IMG/M
3300019356\|Ga0173481_10000450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8771	Open in IMG/M
3300023057\|Ga0247797_1046839	Not Available	615	Open in IMG/M
3300024224\|Ga0247673_1059191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	555	Open in IMG/M
3300025290\|Ga0207673_1003842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1769	Open in IMG/M
3300025912\|Ga0207707_10438988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1118	Open in IMG/M
3300025912\|Ga0207707_11537992	Not Available	526	Open in IMG/M
3300025917\|Ga0207660_11098697	Not Available	648	Open in IMG/M
3300025919\|Ga0207657_10746084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300025922\|Ga0207646_11495234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	585	Open in IMG/M
3300025923\|Ga0207681_10861537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	758	Open in IMG/M
3300025926\|Ga0207659_11930387	Not Available	500	Open in IMG/M
3300025930\|Ga0207701_10142598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2126	Open in IMG/M
3300025933\|Ga0207706_11412075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300025944\|Ga0207661_10571257	Not Available	1037	Open in IMG/M
3300026116\|Ga0207674_10840316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	886	Open in IMG/M
3300026719\|Ga0207438_101220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	627	Open in IMG/M
3300026751\|Ga0207594_102448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	763	Open in IMG/M
3300026878\|Ga0208891_1001564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	779	Open in IMG/M
3300026940\|Ga0207521_102155	Not Available	695	Open in IMG/M
3300026995\|Ga0208761_1003846	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300027453\|Ga0207624_103806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	790	Open in IMG/M
3300027523\|Ga0208890_1082896	Not Available	530	Open in IMG/M
3300027695\|Ga0209966_1118582	Not Available	606	Open in IMG/M
3300027717\|Ga0209998_10026126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1274	Open in IMG/M
3300027717\|Ga0209998_10183105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300027775\|Ga0209177_10031075	All Organisms → cellular organisms → Bacteria → Proteobacteria	1402	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10003057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4368	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10003936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3881	Open in IMG/M
3300031226\|Ga0307497_10014263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2330	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1005732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2959	Open in IMG/M
3300031740\|Ga0307468_100874709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	776	Open in IMG/M
3300031892\|Ga0310893_10000097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14295	Open in IMG/M
3300032075\|Ga0310890_11152561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	629	Open in IMG/M
3300032421\|Ga0310812_10148308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	996	Open in IMG/M
3300033004\|Ga0335084_10410925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1394	Open in IMG/M
3300033513\|Ga0316628_100142883	All Organisms → cellular organisms → Bacteria → Proteobacteria	2785	Open in IMG/M
3300034817\|Ga0373948_0013341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1482	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.33%
Host-Associated	Host-Associated	26.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.50%
Plants	Host-Associated → Plants	26.67%
Aquatic	Environmental → Aquatic	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.83%
Marine	Environmental → Aquatic → Marine	0.83%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.67%
Loam	Environmental → Terrestrial → Soil → Loam	16.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.67%
Sand	Environmental → Terrestrial → Soil → Sand	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.67%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.83%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	15.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.17%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.67%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.33%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.33%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	2.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.67%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.83%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001978	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6	Host-Associated	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003371	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005103	Soil and rhizosphere microbial communities from Laval, Canada - mgLAA	Environmental	Open in IMG/M
3300005159	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005206	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006186	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4	Host-Associated	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300024224	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026719	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A3-11 (SPAdes)	Environmental	Open in IMG/M
3300026751	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-12 (SPAdes)	Environmental	Open in IMG/M
3300026878	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC (SPAdes)	Environmental	Open in IMG/M
3300026940	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-12 (SPAdes)	Environmental	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027453	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-D (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0706.00002800	2162886012	Miscanthus Rhizosphere	MRQLIGKITVTGKVLEEVYLSEQVRCRECQKTVPIGVEVVAIEKGTRPKKVIKRAFYCRSHAGDYESRARGEG
SwBSRL2_0548.00005370	2162886013	Switchgrass Rhizosphere	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG
ARcpr5oldR_00003313	3300000041	Arabidopsis Rhizosphere	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECLKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG*
INPhiseqgaiiFebDRAFT_1051760922	3300000364	Soil	MRQLIGKIAVKARIVEEVYLSEQVRCRECQKTVPIGVEVVTVVKDIRPKKILKRAFYCRSHAGEYEARARGEG*
JGI10215J12807_10572691	3300000881	Soil	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARG
JGI10215J12807_14638942	3300000881	Soil	MRQLIGKIPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGDYESRARG
JGI11643J12802_110547432	3300000890	Soil	MMRLRLKGIRAAKLMRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVRVQKDGPSKKVVKRAFYCRSHAGDYESRARGEG*
JGI24747J21853_10006703	3300001978	Corn, Switchgrass And Miscanthus Rhizosphere	MRQLIGKIPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRXFYCRSHAGDYESRARGEG*
soilH2_101766018	3300003324	Sugarcane Root And Bulk Soil	MRQLLGKIRAGRDVIEEVYLSEQVRCRECQKTVPIGIEVVAVQRQSNPKKILKRTWYCRAHAGDYESRARGET*
JGI26145J50221_10289121	3300003371	Arabidopsis Thaliana Rhizosphere	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVVXRAFYCRSHAGDYESRARGEG*
Ga0062593_1020811172	3300004114	Soil	VRQLIGKIPIKAQVIEEIYLSEQIRCNECQKTMPVGVEVVRVQKEGKSKRVLKRTFYCRAHAGEYESRARGEG*
Ga0062593_1021517272	3300004114	Soil	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVRVQKDGPSKKVVKRAFYCRSHAGDYESRARGEG*
Ga0062589_1000315442	3300004156	Soil	VRQLIGKIPIKGQVVIEEVYLSEQIRCNECQKTAPIGVEVVRVQKEGKSKRVLKRTFYCRAHAGEYESRAQGEG*
Ga0062589_1000469243	3300004156	Soil	MRQLIGKILVTSKVIEEVYLSEQVRCRECQKTVPIGVEVVAIEKGTRPKKVIKRAYYCRSHAGDYESRARGEG*
Ga0062589_1005452212	3300004156	Soil	MRQLIGKITVTGKVLEEVYLSEQVRCRECQKTVPIGVEVVAIEKGTRPKKVIKRAFYCRSHAGDYESRARGEG*
Ga0062595_1015451592	3300004479	Soil	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0062592_1025284711	3300004480	Soil	MRQLIGKILVTSKVIEEVYLSEQVRCRECQKTVPIGVEVVAIEKGTRPKKVIKRAFYCRSHAGDYESRARGEG*
Ga0062594_1000207817	3300005093	Soil	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0066813_10093291	3300005103	Soil	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPVGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0066808_10073692	3300005159	Soil	MRQLIGKIPIKGQKVVEEVYLSEQIRCCECQKTVPIGVEVVTVQKDGPSKKVVKRAFYCRSHSGEYESRARGEG*
Ga0066869_101495382	3300005165	Soil	LIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPVGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0068995_100315611	3300005206	Natural And Restored Wetlands	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVVKRVFYCRSHAGDYESRARGEG*
Ga0066388_1001276044	3300005332	Tropical Forest Soil	MRQLIGKIAIKGKVLIEEVYLSEQVRCIECQKMVPIGVEVVRVQKAGEKKKVLKRTFHCRAHAGEYEARARGEG*
Ga0066388_1013092913	3300005332	Tropical Forest Soil	MRQLIGKIPIKGRIIEEVYLSEQIRCRECQKTVPIGVEVVTVEKDIRPKKVLKRAFYCRSHAGDYESRARGEG*
Ga0070680_1000370425	3300005336	Corn Rhizosphere	VEEVYLSETVRCRECQKTVPIGVEVVRVQKDGPSKKVVKRAFYCRSHAGDYESRARGEG*
Ga0070682_1001067073	3300005337	Corn Rhizosphere	MRQLIGKIAIKGKVVVEEVYLSEQVRCLECQKMVPIGVEVVRVQKEGEKKKIVKRTFHCRAHAGDYESRARGEG*
Ga0070682_1005626261	3300005337	Corn Rhizosphere	MRQLIGKITVTGKVLEEVYLSEQVRCRECQKTVPIGVEVVAIEKGTRPKKVIKRAFYCRSHAGDYESR
Ga0070668_1007915791	3300005347	Switchgrass Rhizosphere	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVLKRAFYCRSHAGDYES
Ga0070667_10000046618	3300005367	Switchgrass Rhizosphere	MRQLIGKIPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGDYESRARGEG*
Ga0070705_1008660452	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MRQLIGKITVTGKVLEEVYLSEQVRCRECQKTVPIGVEVVAIEKGTRPKKVIKRAFYCRSHA
Ga0070706_1012903182	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	QKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGDYESRARGEG*
Ga0070741_1001209119	3300005529	Surface Soil	MRQLLGKIRAGRDVVEEIYLSEQVRCRECQKTVPIGVEVVSVQKDSKPKKILKRTWYCRAHAGDYESRARGEG*
Ga0070697_1001688161	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	PIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGDYESRARGEG*
Ga0070686_1004657871	3300005544	Switchgrass Rhizosphere	MRQLIGKITVTGKVLEEVYLSEQVRCRECQKTVPIGVEVVAIEKGTRPKKVIKRAFYCRSHAGDYE
Ga0070695_1007515392	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MMWLLAEGDTSGETMRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVRVQKDGPSKKVVKRAFYCRSHAGDYESRARGEG*
Ga0070693_1008699652	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRQLIGKIAIKGKVVVEEVYLSEQVRCLECQKMVPIGVEVVRVQKEGEKKKVVKRTFHCRAHAGDYESRARGEG*
Ga0070693_1015058551	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRAR
Ga0070664_1007278181	3300005564	Corn Rhizosphere	GCWKQAAKLMRQLIGKIAIKGKVLVEEVYLSEQVRCLECQKMVPIGVEVVRVQKEGEKKKVVKRTFHCRAHAGDYESRARGEG*
Ga0068854_1002368093	3300005578	Corn Rhizosphere	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0066905_1017419482	3300005713	Tropical Forest Soil	MRQLIGKIAVKGRIVEEVYLSEQVRCRECQKTVPIGVEVVTVEKDIRPKKVLKRAFYCRSHAGEYESRARGEG*
Ga0066905_1022161831	3300005713	Tropical Forest Soil	KIAIKGKVLVEEVYLSEQVRCIECQKMVPIGVEVVRVQKAGEKKKVLKRTFHCRAHAGEYEARARGEG*
Ga0066905_1022161841	3300005713	Tropical Forest Soil	KIAIKGKVLVEEVYLSEQVRCIECQKMVPIGVEVVRVQKVGEKKKVLKRTFHCRAHAGDYESRARGEG*
Ga0081455_100019543	3300005937	Tabebuia Heterophylla Rhizosphere	MRQLIGKIAIKGKVLVEEVYLSELVRCIECQKMVPIGVEVVRVQKEGEKKKVLKRTFHCRAHAGDYESRARGEG*
Ga0075432_100860343	3300006058	Populus Rhizosphere	MRQLIGKIPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKDGQAKKVLKRVFYCRSHAGDYESRARGEG*
Ga0075369_102418202	3300006186	Populus Endosphere	MRQLIGKIAVKGRIVEEVYLSEQIRCRECQKTVPIGVEVVTVEKDIRPKKVLKRAFYCRSHAGEYESRARGEG*
Ga0074048_134884486	3300006581	Soil	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDY
Ga0079222_105623511	3300006755	Agricultural Soil	MRQLIGKIAIKGKVLVEEVYLSEQVRCLECQKMVPIGVEVVRVQKEGEKKKIVKRTFHCRAHAGDYESRARGEG*
Ga0079222_122993231	3300006755	Agricultural Soil	MRQLIGKIAVKGRIVEEVYLSEQIRCRECQKTVPIGVEVVTVEKDIRPKKVLKRAFYCRSHAGDYESRARGEA*
Ga0075433_109321692	3300006852	Populus Rhizosphere	MRQLIGKIALKRRIVEEVYLSEQIRCRECQKTVPIGVEVVTVEKDIRPKKVLKRAFYCRSHAGEYESRARGEG*
Ga0075425_1002022372	3300006854	Populus Rhizosphere	MRQLIGKIALKRRIVEEVYLSEQVRCRECQKTVPIGVEVVTVEKDIRPKKVLKRAFYCRSHAGDYEARARGEG*
Ga0075425_1012488663	3300006854	Populus Rhizosphere	TGKVLEEVYLSEQVRCRECQKTVPIGVEVVAIEKGTRPKKVIKRAFYCRSHAGDYESRARGEG*
Ga0075434_1001126465	3300006871	Populus Rhizosphere	MRQLIGKIPKPRDVIEEVYLSEQVRCRECQKTVPMGIEVVTVQKEGRSKKVLKRGFYCRAHAGDYQSIPQS*
Ga0079219_100924051	3300006954	Agricultural Soil	HRGIAAKYRRDRQNCYFKLSVMLWFEIDSNSDVTPMRQLIGKIPIKGKVVIEEVYLSEQIRCHECQKTAPIGVEVVRVQKDGESKKIIKRTFYCRPHAGDYESRARGEG*
Ga0105245_104363312	3300009098	Miscanthus Rhizosphere	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECLKTAPIGIEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0075423_120984292	3300009162	Populus Rhizosphere	MRGRGRLAYDAEKQAARPMRQLIGKIAIKGKVVVEEVYLSEQVRCLECQKMVTIGVELVRVQKEGEKKKIVKRTFHCRAHAGDYESRARG
Ga0126382_100307695	3300010047	Tropical Forest Soil	MRQLIGKIAIKGKVLIEEVYLSEQVRCIECQKMVPIGVEVVRVQKVGEKKKVLKRTFHCRAHAGDYESRARGEG*
Ga0126382_113399742	3300010047	Tropical Forest Soil	MRQLIGKIPVKGRIIEEVYLSEQIRCRECQKTVPIGVEVVTVEKDIRPKKVLKRAFYCRSHAGDYESRARGEG*
Ga0126382_116490112	3300010047	Tropical Forest Soil	MRQLIGKIAVKGRIVEEVYLSEQIRCRECQKTVPVGVEVVTVEKDIRPKKVLKRAFYCRAHAGEYEARARGEG*
Ga0126376_123558432	3300010359	Tropical Forest Soil	MRQLIGKISIRGKVVVEEVYLSEQVRCLECQKMVPIGVEVVRVQKEGEKKKIVKRTFHCRAHAGDYETRARGEG*
Ga0126376_126455222	3300010359	Tropical Forest Soil	MRQLIGKIPIKGRIVEEVYLSEQIRCRECQKTVPIGVEVVTVEKDIRPKKVLKRAFYCRSHAGDYESRARGEG*
Ga0126377_104243982	3300010362	Tropical Forest Soil	MRQLIGKIAIKGKVLIEEVYLSEQVRCIECQKMVPIGVEVVRVQKVGEKKKVLKRTFHCRAHAGEYEARARGEG*
Ga0134125_103354262	3300010371	Terrestrial Soil	MRQLIGKIPIKGRVVVEEVYLSEQVRCRECQKTAPIGLEVVTVRKDGASKKILKRTFYCRAHAGEYESRARGEG*
Ga0134125_114446733	3300010371	Terrestrial Soil	RQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0134128_105796903	3300010373	Terrestrial Soil	MRQLIGKITVTGKVLEEVYLSEQVRCRECQKTVPIGVEVVAIEKGTSPKKVIKRAFYCRSHAGDYESRARGEG*
Ga0134128_112466592	3300010373	Terrestrial Soil	MRQLIGKIPIKGQKLMEEVYLSEQIRCLECRKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGDYESRARGEG*
Ga0134126_114423672	3300010396	Terrestrial Soil	MRQLIGKIPIKGRVVVEEVYLSEQIRCRECQKMAPIGLEVVTVRKDGASKKILKRTFYCRAHAGEYESRARGEG*
Ga0134122_105546723	3300010400	Terrestrial Soil	VRQLIGKIPIKGQVVIEEVYLSEQIRCNECQKTAPIGVEVVRVQKEGKSKRVLKRTFYCRAHAGEYESRA
Ga0157345_10487242	3300012498	Arabidopsis Rhizosphere	IPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0157300_10321922	3300012884	Soil	MRQLIGKIPIKGQKLMEEVYLSEQVRCLECQKTVPIGVEVVRVQKDGQAKKVLKRVFYCRSHAGDYEARARGEG*
Ga0157303_100011091	3300012896	Soil	IGKIPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGDYESRARGEG*
Ga0157303_100090131	3300012896	Soil	MMWLLAEGDTSGETMRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVRVQKDGPSKKVVKRAFY
Ga0157293_100020365	3300012898	Soil	MRQLIGKIPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCR
Ga0157292_103624431	3300012900	Soil	QRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0157288_100020396	3300012901	Soil	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVIKRAFYCRSHAGDYESRARGEG*
Ga0157290_101739582	3300012909	Soil	KIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0157290_104408442	3300012909	Soil	MRQLIGKIPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKGVFYCRSHAGDY
Ga0157301_100212954	3300012911	Soil	MRQLIGKIPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGDYE
Ga0164241_114083992	3300012943	Soil	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQNTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0157307_10115773	3300013096	Soil	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKGGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0157377_108173081	3300014745	Miscanthus Rhizosphere	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKNVLKRAFYCRSHAGDYESRARGEG*
Ga0132258_1005043511	3300015371	Arabidopsis Rhizosphere	MRQLIGKIAVKSRIVEEVYLSEQVRCRECQKTVPIGVEVVTVEKDIRPKKILKRAFYCRAHAGEYEARARGEG*
Ga0132256_1000580483	3300015372	Arabidopsis Rhizosphere	MRQLIGKIAVKRRIVEEVYLSEQVRCRECQKTVPIGVEVVTVEKDIRPKKILKRAFYCRAHAGEYEARARGEG*
Ga0132256_1005547893	3300015372	Arabidopsis Rhizosphere	GKSGFKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVLKRAFYCRSHAGDYESRARGEG*
Ga0173481_1000045011	3300019356	Soil	MRQLIGKIPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGDYESRARGEG
Ga0247797_10468392	3300023057	Soil	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVRVQKDGPSKKVVKRAFYCRSHAGDYESRARGEG
Ga0247673_10591912	3300024224	Soil	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAG
Ga0207673_10038422	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	MRQLIGKIPIKGQKWMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGDYESRARGEG
Ga0207707_104389883	3300025912	Corn Rhizosphere	VRQLIGKIPIKGQVVIEEVYLSEQIRCNECQKTAPIGVEVVRVQKEGKSKRVLKRTFYCRAHAGEYESRAQGEG
Ga0207707_115379922	3300025912	Corn Rhizosphere	MRQLIGKISIKGKVLVEEVYLSEQVRCLECQKMVPIGVEVVRVQKEGEKKKIVKRTFHCR
Ga0207660_110986971	3300025917	Corn Rhizosphere	KIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVRVQKDGPSKKVVKRAFYCRSHAGDYESRARGEG
Ga0207657_107460842	3300025919	Corn Rhizosphere	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVLKRAFYCRS
Ga0207646_114952342	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSIG
Ga0207681_108615371	3300025923	Switchgrass Rhizosphere	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVLKRAFYCR
Ga0207659_119303871	3300025926	Miscanthus Rhizosphere	GKVLEEVYLSEQVRCRECQKTVPIGVEVVAIEKGTRPKKVIKRAFYCRSHAGDYESRARGEG
Ga0207701_101425984	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVLKRAFYCRSHAGDYESRARGEG
Ga0207706_114120752	3300025933	Corn Rhizosphere	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVLKRAFYCRSHAG
Ga0207661_105712573	3300025944	Corn Rhizosphere	KIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG
Ga0207674_108403163	3300026116	Corn Rhizosphere	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYES
Ga0207438_1012202	3300026719	Soil	IPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGDYESRARGEG
Ga0207594_1024482	3300026751	Soil	KGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGDYESRARGEG
Ga0208891_10015642	3300026878	Soil	LIGKIPIKGQKVVEEVYLSEQIQCCECQKTVPIGVEVVTVQKDGPSKKVVKRAFYCRSHSGEYESRARGEG
Ga0207521_1021552	3300026940	Soil	MRQLIGKIPIKGQRVVEEVYLSEQIRCRECQKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYE
Ga0208761_10038463	3300026995	Soil	MRQLIGKIPIKGQKVVEEVYLSEQIQCCECQKTVPIGVEVVTVQKDGPSKKVVKRAFYCRSHSGEYESRARGEG
Ga0207624_1038062	3300027453	Soil	MRQLIGKIPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGD
Ga0208890_10828961	3300027523	Soil	MRQLIGKIPIKGQKVVEEVYLSEQIRCCECQKTVPIGVEVVTVQKDGPSKKVVKRAFYCRSHSGEYESRARGEG
Ga0209966_11185821	3300027695	Arabidopsis Thaliana Rhizosphere	ARRAMMRLRLKGIRAAKLMRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVRVQKDGPSKKVVKRAFYCRSHAGDYESRARGEG
Ga0209998_100261263	3300027717	Arabidopsis Thaliana Rhizosphere	MMRLRLKGIRAAKLMRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVRVQKDGPSKKVVKRAFYCRSHAGDYESRARGEG
Ga0209998_101831052	3300027717	Arabidopsis Thaliana Rhizosphere	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVVKRAFYCRSHAGDYESRARGEG
Ga0209177_100310751	3300027775	Agricultural Soil	SVMLWFEIDSNSDVTPMRQLIGKIPIKGKVVIEEVYLSEQIRCHECQKTAPIGVEVVRVQKDGESKKIIKRTFYCRPHAGDYESRARGEG
(restricted) Ga0255310_100030574	3300031197	Sandy Soil	MRQLIGKIPIKGQKVVEEVYLSEQIRCRECQKTAPIGIEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG
(restricted) Ga0255310_100039362	3300031197	Sandy Soil	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPAKKVVKRAFYCRSHAGDYESRARGEG
Ga0307497_100142632	3300031226	Soil	MRQLIGKIPIRGQRVVEEVYLSEQIRCRECLKTAPIGVEVVTVQKDGPSKKVLKRAFYCRSHAGDYESRARGEG
(restricted) Ga0255312_10057321	3300031248	Sandy Soil	MRQLIGKIPIKGQKVVEEVYLSEQIRCRECQKTAPIGIEVVTVQKDGPSKKVIKRAFYCRSHAGDYESRARGEG
Ga0307468_1008747092	3300031740	Hardwood Forest Soil	MRQLIGKIAVKARIVEEVYLSEQVRCRECQKTVPIGVEVVTVVKDIRPKKILKRAFYCRSHAGEYEARARGEG
Ga0310893_100000976	3300031892	Soil	MRQLIGKIPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEGVRVQKEGQAKKVLKRVFYCRSHAGDYESRARGEG
Ga0310890_111525611	3300032075	Soil	KGQKVVEEVYLSEQIQCCECQKTVPIGVEVVTVQKDGPSKKVVKRAFYCRSHSGEYESRARGEG
Ga0310812_101483081	3300032421	Soil	FARRNGDTRAKLMRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVLKRAFYCRSHAGDYESRARGEG
Ga0335084_104109252	3300033004	Soil	MRQLIGKIGVKRGIVEEVYLSETVRCRECQKTVPIGVEVVTVQKGGPSKKVIKRAFYCRSHAGDYESRARGEG
Ga0316628_1001428834	3300033513	Soil	MRQFIGRVPTSHRDVIEEIYLSEQIRCTECQKTVPIGIEVVAVQKGSKPKKVLKRTWYCRAHAGDYESRARGEG
Ga0373948_0013341_2_187	3300034817	Rhizosphere Soil	MRQLIGKIPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters