Sample 3300026812

Overview

Basic Information
IMG/M Taxon OID	3300026812 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0055861 \| Ga0207518
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-10 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	29692333
Sequencing Scaffolds	22
Novel Protein Genes	25
Associated Families	25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
Not Available	8
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.2958	Long. (^o)	-89.3799	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001033	Metagenome / Metatranscriptome	799	Y
F001436	Metagenome / Metatranscriptome	695	Y
F003758	Metagenome / Metatranscriptome	470	Y
F004886	Metagenome / Metatranscriptome	420	Y
F014308	Metagenome / Metatranscriptome	264	Y
F015418	Metagenome / Metatranscriptome	255	Y
F015863	Metagenome / Metatranscriptome	251	Y
F018801	Metagenome / Metatranscriptome	233	Y
F020952	Metagenome / Metatranscriptome	221	Y
F024822	Metagenome / Metatranscriptome	204	N
F037759	Metagenome / Metatranscriptome	167	N
F040358	Metagenome / Metatranscriptome	162	N
F041232	Metagenome	160	N
F050714	Metagenome	145	N
F053375	Metagenome	141	N
F053376	Metagenome / Metatranscriptome	141	Y
F058266	Metagenome	135	N
F060887	Metagenome / Metatranscriptome	132	Y
F073679	Metagenome / Metatranscriptome	120	Y
F082749	Metagenome / Metatranscriptome	113	Y
F085279	Metagenome / Metatranscriptome	111	Y
F087349	Metagenome / Metatranscriptome	110	Y
F090709	Metagenome	108	Y
F094081	Metagenome / Metatranscriptome	106	Y
F103330	Metagenome	101	N

Family

Category

Number of Sequences

3D Structure?

F001033

Metagenome / Metatranscriptome

799

F001436

Metagenome / Metatranscriptome

695

F003758

Metagenome / Metatranscriptome

470

F004886

Metagenome / Metatranscriptome

420

F014308

Metagenome / Metatranscriptome

264

F015418

Metagenome / Metatranscriptome

255

F015863

Metagenome / Metatranscriptome

251

F018801

Metagenome / Metatranscriptome

233

F020952

Metagenome / Metatranscriptome

221

F024822

Metagenome / Metatranscriptome

204

F037759

Metagenome / Metatranscriptome

167

F040358

Metagenome / Metatranscriptome

162

F041232

Metagenome

160

F050714

Metagenome

145

F053375

Metagenome

141

F053376

Metagenome / Metatranscriptome

141

F058266

Metagenome

135

F060887

Metagenome / Metatranscriptome

132

F073679

Metagenome / Metatranscriptome

120

F082749

Metagenome / Metatranscriptome

113

F085279

Metagenome / Metatranscriptome

111

F087349

Metagenome / Metatranscriptome

110

F090709

Metagenome

108

F094081

Metagenome / Metatranscriptome

106

F103330

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207518_100041	All Organisms → cellular organisms → Bacteria	1729	Open in IMG/M
Ga0207518_100246	Not Available	1184	Open in IMG/M
Ga0207518_100724	All Organisms → cellular organisms → Bacteria → Proteobacteria	886	Open in IMG/M
Ga0207518_100819	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	855	Open in IMG/M
Ga0207518_101156	All Organisms → cellular organisms → Bacteria → Acidobacteria	776	Open in IMG/M
Ga0207518_101207	Not Available	767	Open in IMG/M
Ga0207518_101308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	748	Open in IMG/M
Ga0207518_101402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	733	Open in IMG/M
Ga0207518_101406	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	732	Open in IMG/M
Ga0207518_101603	Not Available	708	Open in IMG/M
Ga0207518_101822	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
Ga0207518_101850	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
Ga0207518_102392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	634	Open in IMG/M
Ga0207518_102635	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	617	Open in IMG/M
Ga0207518_103009	Not Available	597	Open in IMG/M
Ga0207518_103288	Not Available	583	Open in IMG/M
Ga0207518_103508	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
Ga0207518_103951	Not Available	555	Open in IMG/M
Ga0207518_104221	Not Available	545	Open in IMG/M
Ga0207518_104469	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
Ga0207518_104485	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	537	Open in IMG/M
Ga0207518_104650	Not Available	532	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207518_100041

All Organisms → cellular organisms → Bacteria

1729

Open in IMG/M

Ga0207518_100246

Not Available

1184

Open in IMG/M

Ga0207518_100724

All Organisms → cellular organisms → Bacteria → Proteobacteria

886

Open in IMG/M

Ga0207518_100819

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes

855

Open in IMG/M

Ga0207518_101156

All Organisms → cellular organisms → Bacteria → Acidobacteria

776

Open in IMG/M

Ga0207518_101207

Not Available

767

Open in IMG/M

Ga0207518_101308

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

748

Open in IMG/M

Ga0207518_101402

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium

733

Open in IMG/M

Ga0207518_101406

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

732

Open in IMG/M

Ga0207518_101603

Not Available

708

Open in IMG/M

Ga0207518_101822

All Organisms → cellular organisms → Bacteria

683

Open in IMG/M

Ga0207518_101850

All Organisms → cellular organisms → Bacteria → Proteobacteria

680

Open in IMG/M

Ga0207518_102392

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

634

Open in IMG/M

Ga0207518_102635

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

617

Open in IMG/M

Ga0207518_103009

Not Available

597

Open in IMG/M

Ga0207518_103288

Not Available

583

Open in IMG/M

Ga0207518_103508

All Organisms → cellular organisms → Bacteria

574

Open in IMG/M

Ga0207518_103951

Not Available

555

Open in IMG/M

Ga0207518_104221

Not Available

545

Open in IMG/M

Ga0207518_104469

All Organisms → cellular organisms → Bacteria → Acidobacteria

537

Open in IMG/M

Ga0207518_104485

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

537

Open in IMG/M

Ga0207518_104650

Not Available

532

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207518_100041	Ga0207518_1000411	F018801	MGLTILSIPFIALGVFLKPYALENSRCIGFAGLGPYCFEQASSMPEVIKYGSVAVGFALL
Ga0207518_100246	Ga0207518_1002462	F090709	NRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Ga0207518_100724	Ga0207518_1007242	F040358	MRIAIFALAILAGSGAAEARQVEVVSTSPRHIEIAAWCTAGSNCQQEASDVAQGYCHDPYPRRALYVRSGFVERGFFGGRVIFVYRCNRRSINCEAGSCN
Ga0207518_100819	Ga0207518_1008191	F085279	AYGLGVGQVLDFLEVPAASVVERRELPGVDPRLVKAVGLESNRHFILLDVDAVFAPIIGS
Ga0207518_101156	Ga0207518_1011561	F053375	MHVTPLSAATILAFASPLHAQGIEVFGGYSVNADYVQNRPAILVADQKVSPFFSHGSGPTGFEASFKHDVRNGLGIKVDVS
Ga0207518_101207	Ga0207518_1012072	F053376	MLTLRTLLTSGGEPYQYEVIGLPNGSGAMLARLSGVWKVLKIERGKGHAWNGSFASAEDALGSLDGLVKGALLVPVRS
Ga0207518_101308	Ga0207518_1013082	F024822	VRQLFIRVAGVILCALALSGCVDSAGPLLSEAQPVLGERLRLQFYSLSKGTADEPEQATYKWDRGTYQRTGGGMTDIGSFSVHPLARDIFVVQSASAKRPGMFEYAIARRLVDGVYQVIAVDEADAGQVTRARFCKRASDSSCRIEKRNQL
Ga0207518_101402	Ga0207518_1014022	F014308	LIFPPELEVAFMSGSTIGIQLIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGMGKIVDKVA
Ga0207518_101406	Ga0207518_1014062	F020952	MPIIEKTIRIAAIALAFLFIGVSLLGIFGAWFVDGKATDVALKGFGLI
Ga0207518_101603	Ga0207518_1016031	F015418	MSIESRRTFTKGLLASALVPGTSAFGQPNDPASIAIIDTPQNAAKVAAKLAAQNVKVVVRFFAR
Ga0207518_101822	Ga0207518_1018221	F050714	MMRVLKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSI
Ga0207518_101850	Ga0207518_1018501	F037759	LLSGAARAQSPELGAPSIGILPPSDILASVSYLGLDPSGEPVRRGAYYMLHAFDRAGIELLVVVDAQFGDVLFMAPALNTSLTPPYTRAARIIQVAPESGDQQKR
Ga0207518_102346	Ga0207518_1023462	F087349	LEYGMSWSETMKGNATVASLEHVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV
Ga0207518_102392	Ga0207518_1023921	F073679	MASEGREYFLARAAEERDAATSAPNPSLARVHDDLAAMYDRMAREAE
Ga0207518_102635	Ga0207518_1026352	F103330	MESDEVFHLTAKISSNSNVADKHPILVNFKSRAALLAAGARIDRANIDLQTVEGGI
Ga0207518_103009	Ga0207518_1030092	F058266	MNNDRLLVVFVGLYLIVIVALLFKDAPRPVAPEVKTPVAKVETAPIAKEDKPDAARPQADDGGKPGATPNCEKELRRTADLLRFFANRIQGGEDAQSVV
Ga0207518_103288	Ga0207518_1032881	F015863	MRRFIPLLILLGLVFGASYASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVKRFYTEQLTAAGFEVSDLGLMGLNPMTAAYLGVDGMLSAKRHATDDAIDVQ
Ga0207518_103508	Ga0207518_1035082	F001436	MNHEQDVATLIELLKMAAERWPRSEADQASQSELFHEDHSLLEMWPEACRRTGVGSREFPPGVIKLWK
Ga0207518_103951	Ga0207518_1039512	F003758	VLRAFENAEDEILMNTLKGAPRLDVPSLFRPQFMAEVQKEHPEYFADLPPLK
Ga0207518_104221	Ga0207518_1042211	F060887	MNAAAWICLALPLGATVAIALAGTLISRRLAGYLATASVL
Ga0207518_104469	Ga0207518_1044691	F004886	RLEVLLEIEKGPRSRSWFAGKAPQDLERPAAIKRLLDTGLIEPAPAPQHYRVTADGWEFLQALRARVGGSSGLDWTRVDEIDFSKL
Ga0207518_104485	Ga0207518_1044851	F001033	EKRELLMCGNSLIARLTIAVFAFQMLGVTSVVHAESPDSTAGTSTAGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGNYQLKVRPYFFKSEKGSLLLTASDDAVRKLQAGTAINFTGKAVTHKDGRTHIVLGRATPSSGNRGGVTFSIITDDAKIVFNTSYHFGTQPGT
Ga0207518_104650	Ga0207518_1046502	F041232	RLLLVAASLLLTYGIALVTFMVRWIRFWMRGEYFLPYLFAFVTTLALLLFWWTSRRPHAPLPILSTIVYSVVAGYVAGLIAMVLYPFFQSDGLQHMIEALRFPTIEAAIAFFWFPIRLLTWLFGGITGVTMLVLSRRWRRMTC
Ga0207518_105025	Ga0207518_1050251	F094081	MADDHRKTLKEEFTDRLEKAKGRLQQSFPEIQQSIKTSGAVEAARKIIDPAQSIFKQFADDIQLKDLFAKAEALVANLTVAKSVSRD
Ga0207518_105215	Ga0207518_1052151	F082749	MDGESVDAAGKLGRKRLINHAMTLDAGLSLKGVRHDIDPVVSLPARPVPGMALMLVRFINHFEVLRRESLGQLFCDEIGGSHIARLGERSLPVNGY

Scaffold ID

Protein ID

Family

Sequence

Ga0207518_100041

Ga0207518_1000411

F018801

MGLTILSIPFIALGVFLKPYALENSRCIGFAGLGPYCFEQASSMPEVIKYGSVAVGFALL

Ga0207518_100246

Ga0207518_1002462

F090709

NRHAIDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK

Ga0207518_100724

Ga0207518_1007242

F040358

MRIAIFALAILAGSGAAEARQVEVVSTSPRHIEIAAWCTAGSNCQQEASDVAQGYCHDPYPRRALYVRSGFVERGFFGGRVIFVYRCNRRSINCEAGSCN

Ga0207518_100819

Ga0207518_1008191

F085279

AYGLGVGQVLDFLEVPAASVVERRELPGVDPRLVKAVGLESNRHFILLDVDAVFAPIIGS

Ga0207518_101156

Ga0207518_1011561

F053375

MHVTPLSAATILAFASPLHAQGIEVFGGYSVNADYVQNRPAILVADQKVSPFFSHGSGPTGFEASFKHDVRNGLGIKVDVS

Ga0207518_101207

Ga0207518_1012072

F053376

MLTLRTLLTSGGEPYQYEVIGLPNGSGAMLARLSGVWKVLKIERGKGHAWNGSFASAEDALGSLDGLVKGALLVPVRS

Ga0207518_101308

Ga0207518_1013082

F024822

VRQLFIRVAGVILCALALSGCVDSAGPLLSEAQPVLGERLRLQFYSLSKGTADEPEQATYKWDRGTYQRTGGGMTDIGSFSVHPLARDIFVVQSASAKRPGMFEYAIARRLVDGVYQVIAVDEADAGQVTRARFCKRASDSSCRIEKRNQL

Ga0207518_101402

Ga0207518_1014022

F014308

LIFPPELEVAFMSGSTIGIQLIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGMGKIVDKVA

Ga0207518_101406

Ga0207518_1014062

F020952

MPIIEKTIRIAAIALAFLFIGVSLLGIFGAWFVDGKATDVALKGFGLI

Ga0207518_101603

Ga0207518_1016031

F015418

MSIESRRTFTKGLLASALVPGTSAFGQPNDPASIAIIDTPQNAAKVAAKLAAQNVKVVVRFFAR

Ga0207518_101822

Ga0207518_1018221

F050714

MMRVLKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSI

Ga0207518_101850

Ga0207518_1018501

F037759

LLSGAARAQSPELGAPSIGILPPSDILASVSYLGLDPSGEPVRRGAYYMLHAFDRAGIELLVVVDAQFGDVLFMAPALNTSLTPPYTRAARIIQVAPESGDQQKR

Ga0207518_102346

Ga0207518_1023462

F087349

LEYGMSWSETMKGNATVASLEHVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV

Ga0207518_102392

Ga0207518_1023921

F073679

MASEGREYFLARAAEERDAATSAPNPSLARVHDDLAAMYDRMAREAE

Ga0207518_102635

Ga0207518_1026352

F103330

MESDEVFHLTAKISSNSNVADKHPILVNFKSRAALLAAGARIDRANIDLQTVEGGI

Ga0207518_103009

Ga0207518_1030092

F058266

MNNDRLLVVFVGLYLIVIVALLFKDAPRPVAPEVKTPVAKVETAPIAKEDKPDAARPQADDGGKPGATPNCEKELRRTADLLRFFANRIQGGEDAQSVV

Ga0207518_103288

Ga0207518_1032881

F015863

MRRFIPLLILLGLVFGASYASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVKRFYTEQLTAAGFEVSDLGLMGLNPMTAAYLGVDGMLSAKRHATDDAIDVQ

Ga0207518_103508

Ga0207518_1035082

F001436

MNHEQDVATLIELLKMAAERWPRSEADQASQSELFHEDHSLLEMWPEACRRTGVGSREFPPGVIKLWK

Ga0207518_103951

Ga0207518_1039512

F003758

VLRAFENAEDEILMNTLKGAPRLDVPSLFRPQFMAEVQKEHPEYFADLPPLK

Ga0207518_104221

Ga0207518_1042211

F060887

MNAAAWICLALPLGATVAIALAGTLISRRLAGYLATASVL

Ga0207518_104469

Ga0207518_1044691

F004886

RLEVLLEIEKGPRSRSWFAGKAPQDLERPAAIKRLLDTGLIEPAPAPQHYRVTADGWEFLQALRARVGGSSGLDWTRVDEIDFSKL

Ga0207518_104485

Ga0207518_1044851

F001033

EKRELLMCGNSLIARLTIAVFAFQMLGVTSVVHAESPDSTAGTSTAGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGNYQLKVRPYFFKSEKGSLLLTASDDAVRKLQAGTAINFTGKAVTHKDGRTHIVLGRATPSSGNRGGVTFSIITDDAKIVFNTSYHFGTQPGT

Ga0207518_104650

Ga0207518_1046502

F041232

RLLLVAASLLLTYGIALVTFMVRWIRFWMRGEYFLPYLFAFVTTLALLLFWWTSRRPHAPLPILSTIVYSVVAGYVAGLIAMVLYPFFQSDGLQHMIEALRFPTIEAAIAFFWFPIRLLTWLFGGITGVTMLVLSRRWRRMTC

Ga0207518_105025

Ga0207518_1050251

F094081

MADDHRKTLKEEFTDRLEKAKGRLQQSFPEIQQSIKTSGAVEAARKIIDPAQSIFKQFADDIQLKDLFAKAEALVANLTVAKSVSRD

Ga0207518_105215

Ga0207518_1052151

F082749

MDGESVDAAGKLGRKRLINHAMTLDAGLSLKGVRHDIDPVVSLPARPVPGMALMLVRFINHFEVLRRESLGQLFCDEIGGSHIARLGERSLPVNGY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026812: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-10 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences