Metagenome Family F103330

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103330
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	75 residues
Representative Sequence	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLH
Number of Associated Samples	92
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.93 %
% of genes near scaffold ends (potentially truncated)	98.02 %
% of genes from short scaffolds (< 2000 bps)	92.08 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.832 % of family members)
Environment Ontology (ENVO)	Unclassified (40.594 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.545 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 36.99% Coil/Unstructured: 63.01%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF07244	POTRA	45.54
PF00282	Pyridoxal_deC	1.98
PF01103	Omp85	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	1.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	99.01 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	99.01 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	99.01 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	99.01 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886006\|SwRhRL3b_contig_4250242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1042	Open in IMG/M
2162886006\|SwRhRL3b_contig_778190	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1055	Open in IMG/M
2162886007\|SwRhRL2b_contig_454902	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1660	Open in IMG/M
3300002916\|JGI25389J43894_1041926	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	786	Open in IMG/M
3300004480\|Ga0062592_101403056	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	665	Open in IMG/M
3300005171\|Ga0066677_10103513	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1510	Open in IMG/M
3300005175\|Ga0066673_10042563	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2252	Open in IMG/M
3300005175\|Ga0066673_10049626	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2110	Open in IMG/M
3300005180\|Ga0066685_10870745	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300005184\|Ga0066671_10287560	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1026	Open in IMG/M
3300005293\|Ga0065715_10368142	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	925	Open in IMG/M
3300005330\|Ga0070690_100924857	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	683	Open in IMG/M
3300005334\|Ga0068869_100635956	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	904	Open in IMG/M
3300005339\|Ga0070660_100194828	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1642	Open in IMG/M
3300005343\|Ga0070687_101162329	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	567	Open in IMG/M
3300005345\|Ga0070692_10756663	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	659	Open in IMG/M
3300005364\|Ga0070673_100600289	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1004	Open in IMG/M
3300005437\|Ga0070710_11413131	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300005454\|Ga0066687_10285787	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	930	Open in IMG/M
3300005456\|Ga0070678_101687878	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596	Open in IMG/M
3300005518\|Ga0070699_100559932	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1041	Open in IMG/M
3300005547\|Ga0070693_101140743	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596	Open in IMG/M
3300005548\|Ga0070665_100965639	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	864	Open in IMG/M
3300005576\|Ga0066708_10634522	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	682	Open in IMG/M
3300006358\|Ga0068871_102004073	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	551	Open in IMG/M
3300006791\|Ga0066653_10368784	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	731	Open in IMG/M
3300006796\|Ga0066665_11388949	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300009101\|Ga0105247_11512870	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	548	Open in IMG/M
3300009137\|Ga0066709_100760041	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1400	Open in IMG/M
3300009137\|Ga0066709_103847500	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300009545\|Ga0105237_10815189	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	940	Open in IMG/M
3300010159\|Ga0099796_10493892	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	548	Open in IMG/M
3300010301\|Ga0134070_10455855	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300010303\|Ga0134082_10534042	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300010326\|Ga0134065_10006489	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3003	Open in IMG/M
3300010335\|Ga0134063_10258027	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	831	Open in IMG/M
3300010337\|Ga0134062_10064577	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1517	Open in IMG/M
3300010401\|Ga0134121_12752092	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	537	Open in IMG/M
3300010999\|Ga0138505_100029081	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	745	Open in IMG/M
3300011119\|Ga0105246_11766681	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	590	Open in IMG/M
3300012198\|Ga0137364_10049187	All Organisms → cellular organisms → Bacteria	2800	Open in IMG/M
3300012198\|Ga0137364_10530124	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	886	Open in IMG/M
3300012202\|Ga0137363_11342393	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300012211\|Ga0137377_10434840	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1251	Open in IMG/M
3300012285\|Ga0137370_10313846	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	938	Open in IMG/M
3300012285\|Ga0137370_10588257	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	687	Open in IMG/M
3300012506\|Ga0157324_1062020	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300012582\|Ga0137358_10169887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1487	Open in IMG/M
3300012582\|Ga0137358_10969528	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	552	Open in IMG/M
3300012908\|Ga0157286_10293368	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
3300012917\|Ga0137395_10215206	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1341	Open in IMG/M
3300012918\|Ga0137396_10193236	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1495	Open in IMG/M
3300012923\|Ga0137359_10257076	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1557	Open in IMG/M
3300012923\|Ga0137359_10492147	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1083	Open in IMG/M
3300012930\|Ga0137407_11444169	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	654	Open in IMG/M
3300012951\|Ga0164300_10050354	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1644	Open in IMG/M
3300012957\|Ga0164303_10132936	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1289	Open in IMG/M
3300012958\|Ga0164299_10563648	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	771	Open in IMG/M
3300012975\|Ga0134110_10166922	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	914	Open in IMG/M
3300012984\|Ga0164309_11138444	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	651	Open in IMG/M
3300012985\|Ga0164308_10091151	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2114	Open in IMG/M
3300013096\|Ga0157307_1014960	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1234	Open in IMG/M
3300013100\|Ga0157373_11469771	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300013102\|Ga0157371_10903396	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	670	Open in IMG/M
3300013104\|Ga0157370_11515328	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	603	Open in IMG/M
3300013306\|Ga0163162_12835172	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M
3300014150\|Ga0134081_10025779	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1678	Open in IMG/M
3300014487\|Ga0182000_10502386	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300015053\|Ga0137405_1406461	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1614	Open in IMG/M
3300018051\|Ga0184620_10116505	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	838	Open in IMG/M
3300018051\|Ga0184620_10266055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	576	Open in IMG/M
3300018468\|Ga0066662_11594426	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	681	Open in IMG/M
3300018482\|Ga0066669_10057583	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2498	Open in IMG/M
3300018482\|Ga0066669_12195449	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300019869\|Ga0193705_1075078	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	661	Open in IMG/M
3300019870\|Ga0193746_1013297	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	840	Open in IMG/M
3300019874\|Ga0193744_1018049	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1309	Open in IMG/M
3300019997\|Ga0193711_1024760	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	758	Open in IMG/M
3300020004\|Ga0193755_1152382	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	700	Open in IMG/M
3300020199\|Ga0179592_10408552	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
3300021168\|Ga0210406_10098076	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2492	Open in IMG/M
3300021411\|Ga0193709_1036248	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1177	Open in IMG/M
3300021478\|Ga0210402_10835880	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	847	Open in IMG/M
3300022534\|Ga0224452_1247563	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300024288\|Ga0179589_10039389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1718	Open in IMG/M
3300025903\|Ga0207680_10111096	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1777	Open in IMG/M
3300025915\|Ga0207693_10616334	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	844	Open in IMG/M
3300025960\|Ga0207651_10907396	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	785	Open in IMG/M
3300026067\|Ga0207678_10904279	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	780	Open in IMG/M
3300026089\|Ga0207648_11028108	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	772	Open in IMG/M
3300026305\|Ga0209688_1081933	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	584	Open in IMG/M
3300026812\|Ga0207518_102635	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	617	Open in IMG/M
3300027457\|Ga0207625_102020	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	877	Open in IMG/M
3300027750\|Ga0209461_10073232	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	736	Open in IMG/M
3300028047\|Ga0209526_10916820	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531	Open in IMG/M
3300028705\|Ga0307276_10109494	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	675	Open in IMG/M
3300028791\|Ga0307290_10174611	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	788	Open in IMG/M
3300031469\|Ga0170819_12492003	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	635	Open in IMG/M
3300031547\|Ga0310887_10479661	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	746	Open in IMG/M
3300031879\|Ga0306919_11400033	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
3300031962\|Ga0307479_10192473	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2008	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.21%
Host-Associated	Host-Associated	20.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.24%
Plants	Host-Associated → Plants	20.79%
Aquatic	Environmental → Aquatic	2.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.93%
Sediment	Environmental → Aquatic → Sediment	2.97%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.99%
Roots	Host-Associated → Plants → Roots	0.99%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.36%
Loam	Environmental → Terrestrial → Soil → Loam	10.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.99%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.99%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.99%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886006	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012506	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019870	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m1	Environmental	Open in IMG/M
3300019874	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026812	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-10 (SPAdes)	Environmental	Open in IMG/M
3300027457	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-D (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL3b_0450.00001800	2162886006	Switchgrass Rhizosphere	MESDEVFHLTAKISSNSNVADKHPILVNFEPSRGLFAPGARVDGANVDLQTIENGIALCGLAFFENFAVKLLHHQHGSATGQDV
SwRhRL3b_0896.00000900	2162886006	Switchgrass Rhizosphere	MESDEVFHLTAKISSNSNVADKHPILVNFEPSRGLFAPGARVDGANVDLQTIENGIALCGLAFFENFAVKLLHHQHGSATGQNVAASS
SwRhRL2b_0430.00005110	2162886007	Switchgrass Rhizosphere	MESDEVFHLTAKISSNSDVADKHPILVNFEPCRGLLAPGARVDGADVDLQTIENGIALCGLAFFEN
JGI25389J43894_10419262	3300002916	Grasslands Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGRLAFLENLPIKLLHQQHGSATS
Ga0062592_1014030562	3300004480	Soil	MESDEVFHLAAKLSPNSNVTDKYPILVNFKSRGGLFPAGARINGAEIDLQTIENRVALRGLTFFKNFAVQLLHHEHGSATRQD
Ga0066677_101035132	3300005171	Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALG
Ga0066673_100425631	3300005175	Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVED
Ga0066673_100496261	3300005175	Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVED
Ga0066685_108707452	3300005180	Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALG
Ga0066671_102875602	3300005184	Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQ
Ga0065715_103681421	3300005293	Miscanthus Rhizosphere	MESNEVFHLAAKVSSNSNVANKYPILVNFKPCGGLLASGAGIYVANVDLQAIENGIALRR
Ga0070690_1009248572	3300005330	Switchgrass Rhizosphere	MESNEVFHLAAKVSSNSNVANKYPILVNFKPCGGLLASGAGIYVANVDLQAIENGIALRRLAFLENF
Ga0068869_1006359561	3300005334	Miscanthus Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQT
Ga0070660_1001948282	3300005339	Corn Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAGLLTTSARIDRADIDLQTVEDGIALGGLA
Ga0070687_1011623292	3300005343	Switchgrass Rhizosphere	MESNEVFHLAAKVSSNSNVANKYPILVNFKPCGGLLASGAGIYVANVDLQAIENGIALRRLAFLE
Ga0070692_107566631	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEGGIALGGLAFLENLPVKL
Ga0070673_1006002891	3300005364	Switchgrass Rhizosphere	MESDEVFHLTAKISSNSKVADKHPILVNFKPRGGLLTAGARINGANIDLQTIENGAALRGLTFLENLA
Ga0070710_114131312	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MESDEVFHLTAKISPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLHQQHGRATG
Ga0066687_102857872	3300005454	Soil	MESDEVFHLTAKFSSNSNVADKHPILVNFKSRRRLLATGARIDRTEINLQAVEDGIALGRLAFLENLPVKLLHQQHGSATS
Ga0070678_1016878781	3300005456	Miscanthus Rhizosphere	MESDEVFHLTAKISSNSNVADKHPILVNFEPCRGLLAPGARVDGADVDLQTIENGIALCGLAFFENFAVKLLHHQHGSATGQDVAAS
Ga0070699_1005599321	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MEPDEVFHLTAKFSPNSKVTDKHPILVNFKSRGGLLTTGARIDCAEIDLQTVENGIALGRLAFLENLPVKLL
Ga0070693_1011407432	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MESDEVFHLTAKISSNSNVADKHPILVNFEPSRGLFAPGARVDGANVDLQTIENGIALCGLAFFE
Ga0070665_1009656391	3300005548	Switchgrass Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEGGIALG
Ga0066708_106345221	3300005576	Soil	MESDEVFHLTAKISSNSNVADKHPILVNFEPCRGLLAPGARVDGADIDLQTIENGIALCGLAFFENFAV
Ga0068871_1020040731	3300006358	Miscanthus Rhizosphere	MESDEVFHLTAKISSNSKVADKHPILVNFKPRGGLLTAGARINGANIDLQTIENGAALRGLTFLENLAIQLLHQEHGSATGQDAAVSGQFLTRAPGRK
Ga0066653_103687842	3300006791	Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGCLLTTGARIDRAKIDLQTVEDGIALGR
Ga0066665_113889491	3300006796	Soil	MESDEVFHLTAKFSPNSKVANKHPILVNFKSRAGLLTTGARVDRAEINLQTIEDRIALGGLAFLENLPVKLLH
Ga0105247_115128702	3300009101	Switchgrass Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQ
Ga0066709_1007600411	3300009137	Grasslands Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGGLLATGARIDRAEIDLQTIEDGIALG
Ga0066709_1038475002	3300009137	Grasslands Soil	MESDEVFHLTAKFSSNSKVTDKYPILVNFKSRGGLLATGARIDRAEIDLQTIEDGIALGRLAFLENLPIKLLHQQHGSATS
Ga0105237_108151891	3300009545	Corn Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEGGIALGGLAFLENLPVKLLHQQHGRATGQNVAISSQ
Ga0099796_104938921	3300010159	Vadose Zone Soil	MESDEVFHLTAKFSPNSKITDKYPILVNFKSPAGLLTTGTRIDRANINLQTVEDGIALGGLA
Ga0134070_104558552	3300010301	Grasslands Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGGLLTTGARIDRAEIDLQTVEDGIALGGLAFLENLSVKLLHQQHGRATSQDVAISSQ
Ga0134082_105340422	3300010303	Grasslands Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGCLLTTGARIDRAKIDLQTVEDGIALGRLPFLENLPVKLLHQQHGSATSQ
Ga0134065_100064891	3300010326	Grasslands Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGGLLTTGARIDRAEIDLQTVEDGIALGRLAFLENLPIK
Ga0134063_102580272	3300010335	Grasslands Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGSLLAAGARIDRAEIDLQTIED
Ga0134062_100645771	3300010337	Grasslands Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGCLLTTGARIDRAKIDLQTVEDGIALGRLPFLENLPVK
Ga0134121_127520921	3300010401	Terrestrial Soil	MESDEVFHLTAKISSNSKVTDKHPILVNFKPRGGLLTAGARINGANIDLQTIENGAALRGLTF
Ga0138505_1000290812	3300010999	Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAGLLTAGSRIDRANIDLQTIEDGIALGVLAFLENLPVKLLHQQHGRATGQNVAISSQLLTGRSSSEKRNDFF
Ga0105246_117666811	3300011119	Miscanthus Rhizosphere	MESDEVFHLTAKISSNSKVADKHPILVNFKPRGGLLTAGARINGANIDLQTIENGAALRGLTFLENLAIQLLHQEHGSATGQDAAVSGQFLTRAPGRKQRNNFFLRQ
Ga0137364_100491871	3300012198	Vadose Zone Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGSLLAAGARIDRAEIDLQTIEDGIALG
Ga0137364_105301242	3300012198	Vadose Zone Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGCLLTTGARIDRAKIDLQTVEDGIALGRLAFLENLPIKLLHQQHGSAT
Ga0137363_113423931	3300012202	Vadose Zone Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRGGLLTTGARVDRANIDLQTVEDGIALGRLAF
Ga0137377_104348401	3300012211	Vadose Zone Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGGLLTPGARIDRAKVDLQTVEDGIALGRLALFENLPVKLLHQQHGGATSQDVTISSQLLAGRSGSEKRN
Ga0137370_103138462	3300012285	Vadose Zone Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRGGLLTTGARVDRANIDLQTVEDGIALGGLAFLKILPVKLLHQQHGRATGQNVAISSQL
Ga0137370_105882572	3300012285	Vadose Zone Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGRLAFLENLP
Ga0157324_10620202	3300012506	Arabidopsis Rhizosphere	MESDEVFHLTAKISSNSKVADKHPILVNFKPRGGLLTAGARINGANIDLQTIENGAALRGLTFL
Ga0137358_101698872	3300012582	Vadose Zone Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAALLTAGARIDRANIDLQTVEDGIALGGLAFLENLSVKLLHQQHGSATSQDVAVSSQLLAGRSSS
Ga0137358_109695282	3300012582	Vadose Zone Soil	MKARKKTARRISMESDEVFHLTAKFSPNSKVTYKYPILVNFKSRGGLLTTGARVDRANIDLQTVEGGIALGGLAFLKNLPVKLLHQQHGRATGQNVAISSQLLTGRSSSEKRNDFFLR
Ga0157286_102933681	3300012908	Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLAAGARIDRANIDLQTVEGGIALGGLAFLENL
Ga0137395_102152062	3300012917	Vadose Zone Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGGLLTTSTRIDRAEIDLQTVEDGIALGRLAFLENLPVKLLHQQHGRATGQNVAISSQLL
Ga0137396_101932361	3300012918	Vadose Zone Soil	MESDEVFHLTAKFSPNSKITDKYPILVNFKSPAGLLTTGTRIDRANINLQTVEDGIALGGLAFL
Ga0137359_102570761	3300012923	Vadose Zone Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGRLAFLENLPIKLLHQQHGSATSQDVA
Ga0137359_104921471	3300012923	Vadose Zone Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLH*
Ga0137407_114441692	3300012930	Vadose Zone Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRGGLLTTSARIDRAKIDLQTVEDGIALGRLAFLENLPVKL
Ga0164300_100503541	3300012951	Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKPPAGLLTAGARIDRTNINLQTVENGIALGGLAFLENL
Ga0164303_101329362	3300012957	Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEGGIALGGLAFLKNLPVKLLHQQHGRATGQNVAISSQLLTGRSSSEKRNDFFL
Ga0164299_105636482	3300012958	Soil	MKARKKTARRISMESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAGLLTTGARVDRANIDLQTVEDGIALGGLAFLENLPVKLLHQQHGRATGQNVAISSQLLTGRSSSEKR
Ga0134110_101669222	3300012975	Grasslands Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLHQQHGRATSQDVAISSQLLTGRSSSEKRNNFFLRQGRLTRENGLGGE*
Ga0164309_111384442	3300012984	Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTTGARVDRANIDLQTVEDGIALGGLAFLENLPVKLLHQQHCRATSQDVAISSQLLTGRSCSEKRNNFFLRQGRLARENGLRRKGIAIDGHA
Ga0164308_100911511	3300012985	Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAGLLTTSARIDRADIDLQTVEDGIALGGLAFLENLPVKLLHQQHGRATGQNVAISSQLLTGRSSSEKRND
Ga0157307_10149601	3300013096	Soil	MESDEVFHLAAKLSPNSNVTDKYPILVNFKPCGGLLASSAGIYVANVDLQAIENGIALRRLAFLENFA
Ga0157373_114697711	3300013100	Corn Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVVGGIALGGLAFL
Ga0157371_109033962	3300013102	Corn Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEGGIALGGLAFLENLPVKLLHQQHGRATGQNVAISSQLLTGRSSS
Ga0157370_115153281	3300013104	Corn Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEGGIALGGLAFLENLPVKLLHQQHGRATGQNVAI
Ga0163162_128351722	3300013306	Switchgrass Rhizosphere	MESNEVFHLAAKVSSNSNVANKYPILVNFKPCGGLLASGAGIYVANVDLQAIENGIALRRLAFLENFAVK
Ga0134081_100257791	3300014150	Grasslands Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGSLLAAGARIDRAEIDLQTIEDGIALGRLAF
Ga0182000_105023861	3300014487	Soil	MESDEVFHLTAKFSPNANVADKHPILVNFKSRRSLLPAGARINRAEIDLQAIENGVALSRLA
Ga0137405_14064611	3300015053	Vadose Zone Soil	MESDEIFHLTAKVSPNSKVTDKHPILVNFKSRAALLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLHHCTSNM
Ga0184620_101165051	3300018051	Groundwater Sediment	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLHQ
Ga0184620_102660552	3300018051	Groundwater Sediment	MESDEVFHLPAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLHQ
Ga0066662_115944262	3300018468	Grasslands Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGCLLTTGARIDRAKIDLQTVEDGIGLGRLPFLENLPVKLLHQQHGSATSQDVAISS
Ga0066669_100575833	3300018482	Grasslands Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDG
Ga0066669_121954492	3300018482	Grasslands Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDG
Ga0193705_10750781	3300019869	Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLHQQHGRATGQNVAISSQLLTGRSSSEKRNDFFLRQ
Ga0193746_10132972	3300019870	Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLHQQHGRATGQNVAISSQLLAG
Ga0193744_10180492	3300019874	Soil	MESDEVFHLTAKISPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLHQQHGRATGQNV
Ga0193711_10247602	3300019997	Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRGGLLTTGARVDRANIDLQTVEGGIALG
Ga0193755_11523821	3300020004	Soil	MESDEVFHLTAKISPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLHQQHGRATGQNVAIS
Ga0179592_104085521	3300020199	Vadose Zone Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLHQQHSRATSQDVVI
Ga0210406_100980763	3300021168	Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKPRAALLTTGARVDRANIDLQTVEDGIALGGLAFLKNLPVKLL
Ga0193709_10362482	3300021411	Soil	MESDEVFHLTAKISPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTIEDGIALGGLAFLENLPVKLLH
Ga0210402_108358802	3300021478	Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEDGIALGGLAF
Ga0224452_12475632	3300022534	Groundwater Sediment	MESDEVFHLTAKFSSNSKITDKHPILVNFKSRRSLFTAGARIDRAEIDLQTIEDGIALGRLAFLENLPVKLLHQQ
Ga0179589_100393892	3300024288	Vadose Zone Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRGGLLTTGARVDRANIDLQTVEGGIALGGLAFLK
Ga0207680_101110961	3300025903	Switchgrass Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEGGIALGGLAFLENLPVKLLHQQHGRAT
Ga0207693_106163342	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEGGIALGGLAFL
Ga0207651_109073962	3300025960	Switchgrass Rhizosphere	MESDEVFHLTAKISSNSKVADKHPILVNFKPRGGLLTAGARINGANIDLQTIENGAALRGLTFLENLAIQLLHQEHGSATGQHAAVSGQFL
Ga0207678_109042792	3300026067	Corn Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAGLLTTSARIDRADIDLQTVEDGIA
Ga0207648_110281081	3300026089	Miscanthus Rhizosphere	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEGGIALGGLAFLENLPVKLLHQQHGRATGQNVAISSQLLTG
Ga0209688_10819332	3300026305	Soil	MESDEVFHLTAKFSSNSKVTDKHPILVNFKSRGSLLTAGARIDRAKVDLQT
Ga0207518_1026352	3300026812	Soil	MESDEVFHLTAKISSNSNVADKHPILVNFKSRAALLAAGARIDRANIDLQTVEGGI
Ga0207625_1020202	3300027457	Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEGGIALGGLAFLENLPVKLLHQQHGRATGQNVAISSQL
Ga0209461_100732322	3300027750	Agave	MESDEVFHLTAKISPNSNVADKHPILVNFESRGSLFAAGARINGSKVDLQTIE
Ga0209526_109168201	3300028047	Forest Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKPRGGLLTTGARIHRAEIDLQ
Ga0307276_101094941	3300028705	Soil	MESDEVFHLPAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTIEDGIALGGLAFLENLPVKLLHQQHGRATGQNVAISSQLLTG
Ga0307290_101746112	3300028791	Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQTVEDGIALGGLAFLENLPVKLLHQQ
Ga0170819_124920032	3300031469	Forest Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRGGLLTTGARVDGANIDLQTVEDGIALGGLAFLKNLPVKLLHQQ
Ga0310887_104796612	3300031547	Soil	MESDEVFHLTAKFSPNSKVTDKHPILVNFKSRAALLTTGARVDRANIDLQTVEDGIALGGLAFLENLPVKLLHQQHGRATGQNVAISSQLLTGRSSSEKRNDFFLRQ
Ga0306919_114000332	3300031879	Soil	MESNEVFHLTAKIASNSNVANKYPILVNFEPSRGLPPPRSWVYRADVDLQAIKDGIALRRLAFFENF
Ga0307479_101924731	3300031962	Hardwood Forest Soil	MESDEVFHLTAKVSPNSKVTDKHPILVNFKSRAGLLTAGARIDRANIDLQAVEDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103330

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences