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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026741 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0091536 | Ga0207510 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-C (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 21146901 |
| Sequencing Scaffolds | 28 |
| Novel Protein Genes | 31 |
| Associated Families | 31 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria | 5 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 4 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000268 | Metagenome / Metatranscriptome | 1411 | Y |
| F000610 | Metagenome / Metatranscriptome | 990 | Y |
| F001263 | Metagenome / Metatranscriptome | 735 | Y |
| F002544 | Metagenome / Metatranscriptome | 550 | Y |
| F006084 | Metagenome / Metatranscriptome | 382 | Y |
| F006966 | Metagenome / Metatranscriptome | 361 | Y |
| F007661 | Metagenome / Metatranscriptome | 347 | Y |
| F009353 | Metagenome / Metatranscriptome | 319 | Y |
| F015492 | Metagenome / Metatranscriptome | 254 | Y |
| F017145 | Metagenome / Metatranscriptome | 242 | Y |
| F017166 | Metagenome / Metatranscriptome | 242 | Y |
| F026346 | Metagenome / Metatranscriptome | 198 | Y |
| F027674 | Metagenome | 194 | Y |
| F032172 | Metagenome / Metatranscriptome | 180 | Y |
| F034172 | Metagenome / Metatranscriptome | 175 | Y |
| F035467 | Metagenome / Metatranscriptome | 172 | Y |
| F038480 | Metagenome | 166 | Y |
| F040197 | Metagenome / Metatranscriptome | 162 | Y |
| F042319 | Metagenome / Metatranscriptome | 158 | Y |
| F042594 | Metagenome | 158 | Y |
| F045439 | Metagenome / Metatranscriptome | 153 | Y |
| F046561 | Metagenome / Metatranscriptome | 151 | Y |
| F048418 | Metagenome / Metatranscriptome | 148 | Y |
| F049092 | Metagenome | 147 | N |
| F064703 | Metagenome / Metatranscriptome | 128 | Y |
| F066928 | Metagenome / Metatranscriptome | 126 | Y |
| F070178 | Metagenome / Metatranscriptome | 123 | Y |
| F090480 | Metagenome / Metatranscriptome | 108 | Y |
| F090518 | Metagenome / Metatranscriptome | 108 | N |
| F101470 | Metagenome | 102 | Y |
| F102094 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207510_100263 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1307 | Open in IMG/M |
| Ga0207510_100320 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 1238 | Open in IMG/M |
| Ga0207510_100427 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1147 | Open in IMG/M |
| Ga0207510_100543 | Not Available | 1064 | Open in IMG/M |
| Ga0207510_100567 | All Organisms → cellular organisms → Bacteria | 1052 | Open in IMG/M |
| Ga0207510_101042 | Not Available | 863 | Open in IMG/M |
| Ga0207510_101077 | Not Available | 853 | Open in IMG/M |
| Ga0207510_101209 | All Organisms → cellular organisms → Bacteria | 818 | Open in IMG/M |
| Ga0207510_101467 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 760 | Open in IMG/M |
| Ga0207510_101599 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 737 | Open in IMG/M |
| Ga0207510_101775 | Not Available | 705 | Open in IMG/M |
| Ga0207510_101824 | Not Available | 696 | Open in IMG/M |
| Ga0207510_101845 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 693 | Open in IMG/M |
| Ga0207510_101954 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 681 | Open in IMG/M |
| Ga0207510_101966 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 679 | Open in IMG/M |
| Ga0207510_102116 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 659 | Open in IMG/M |
| Ga0207510_102312 | All Organisms → cellular organisms → Bacteria | 638 | Open in IMG/M |
| Ga0207510_102747 | Not Available | 603 | Open in IMG/M |
| Ga0207510_102948 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 588 | Open in IMG/M |
| Ga0207510_103101 | All Organisms → cellular organisms → Bacteria | 577 | Open in IMG/M |
| Ga0207510_103291 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 565 | Open in IMG/M |
| Ga0207510_103401 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 558 | Open in IMG/M |
| Ga0207510_103726 | Not Available | 540 | Open in IMG/M |
| Ga0207510_103902 | Not Available | 533 | Open in IMG/M |
| Ga0207510_104002 | All Organisms → cellular organisms → Bacteria | 529 | Open in IMG/M |
| Ga0207510_104248 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 518 | Open in IMG/M |
| Ga0207510_104377 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 513 | Open in IMG/M |
| Ga0207510_104509 | Not Available | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207510_100263 | Ga0207510_1002632 | F015492 | MSMKRQVSIYVAALLALLYAGLQSGARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDDGARHTVLFTILESNTEAKIYWKSKDGSQTTIMRGQGLRAFQTVGEFRIEATGDDSRSFRYGYVLFRLKSEKSAQ |
| Ga0207510_100320 | Ga0207510_1003201 | F026346 | SRVASIVVETDKKGRCEERRFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK |
| Ga0207510_100427 | Ga0207510_1004271 | F038480 | MKTVLVSIGLCLAATAVHSMPLSLLNANVAQPVIAVSDQCGDRCGSSRSYVRVRRTVMAGYRGGYVLVRDPLIQRRPYCPFGSYVACIMSGTYCIDLCH |
| Ga0207510_100543 | Ga0207510_1005432 | F090518 | MTKIELEQIDDGILNFNVSDEALESAGDNAVAANYTLG |
| Ga0207510_100567 | Ga0207510_1005672 | F000268 | MRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTHPKTDIETFTVSMRTADDRWRAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYTAFASDGHGGSSGVTFGFGKNGKMIFPDSFDE |
| Ga0207510_101042 | Ga0207510_1010421 | F049092 | MKFIEPAFETGGDLWRTSSNVPDADARALNEKLARQSAELNRRLTEILELHNVHQRQANELQDAHDEIDRLSQTVSALQEAVTQYQAGAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASS |
| Ga0207510_101077 | Ga0207510_1010771 | F017166 | GHSTGRGARTRGSGVRFATILALAVMVFTGWLYLGEKDAVRSTKADVVAAADRTAVALSQSTDPERNTDADAEDVFKKHVQTPSALEDLVVKQSVESISAGRLRQSVTISARAHTTLSEFFSMQGAEIEITATHDFDRKK |
| Ga0207510_101209 | Ga0207510_1012092 | F045439 | MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAV |
| Ga0207510_101366 | Ga0207510_1013661 | F064703 | RVTHDCRSIGPSRIVLMRKGLTVLIVAVLGVFAVKSVIGPGKMSLSEAVKYPVPTYDLHVAQPVDMKNFPSDVIPLP |
| Ga0207510_101467 | Ga0207510_1014672 | F009353 | MAVVDDHGFFITLQAIRRQLAAMPNELYLVRLIHQQTRRAFPGERLWSADQLGSAATVRFLRGRNREGCDVYLQPYAGDQNAGYILLDLDGAQPTV |
| Ga0207510_101599 | Ga0207510_1015991 | F006966 | AAAPEQVTCDSPCDCHDAHGEGRWSVKTDASLPPTDANAIQAVTPSEMFSWPGPDAPLTMQSERTGIENKWFALTGRVVELKVEEDGDLHIGLHDVTGDKPGVVVCEVPAKPQWCEIRTTVFSWTPTRFPFHTGTAKKLTFGQSPIITVIGKAYWDVGHAPKDQGNRRKYMPDYAVWEIHPVMKIETLR |
| Ga0207510_101775 | Ga0207510_1017752 | F034172 | GGASYAADLRLDHERTHARGAGTFDQRMRVVEQKPYCGDCEAPIGRTHSANVARLRFINWPFWQESCAVGACGVYYPVMRSCAFWGLGCT |
| Ga0207510_101824 | Ga0207510_1018242 | F017145 | MTAHKSSHRHWMLRDIPRTYVLLTWLAFGAALLIYSNDWHPSGWTALRKEATAPKPPVSVTEQYTGSIIIVPTRGEDCRQMMLDNRTGRMWDKGVVNCYEAVSRPEKGQRGGMSSLRMNAIGK |
| Ga0207510_101845 | Ga0207510_1018451 | F042594 | GMRLGFYAVQPIPGKLIFYGSIGGIIEMVIVGAMVGAIYKPAPSRTS |
| Ga0207510_101954 | Ga0207510_1019541 | F001263 | LLLLVALILLPVKGVRAETPQDPIYVKTSNGWNAAYAHGNEYAEFRVTGNGAKFQDPYHILLQKNVGMMVSFVDKKELQSDRDLLSAHAQWEIDYWHQHASRVESNNREDLTGTRKDLKVTEIRVYNDKGAQMSSYLIGLAAKDGVFVLSVSPASKDMDPLVKELVNSFKLVPRNLDAEETKRLSSEAKTQR |
| Ga0207510_101966 | Ga0207510_1019662 | F035467 | LNHCAVNDNFIHMKNPIIFISALSLVAMMFASCGSVLAPDETATTGVTSQTNETRPERSAEDSVDSMSGGHY |
| Ga0207510_102116 | Ga0207510_1021161 | F048418 | FAGEKDREGDATSGDVRMPIHLPPKARVKAMPARRQAAAHAIDWLGLWALSVAFCAIVLAGIAYFMIGDNTGASCILVGAAAIIAIVVRFGTDRDEARDEN |
| Ga0207510_102312 | Ga0207510_1023123 | F040197 | MDPAVAALDFAKAGAIIANMIESYLAAGATPLNAEGAEHAERED |
| Ga0207510_102511 | Ga0207510_1025112 | F007661 | MKQFKLSSKRKSSGQVVVLLIIVLALLGGAWWWLNSNKENAAKEGTAFARDAMQKIAVQHDINFFNSRLSPQARVNFPASTQQEFMNEIVKLGAPVRPVDVQGKIEFNSQ |
| Ga0207510_102747 | Ga0207510_1027472 | F101470 | EEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG |
| Ga0207510_102948 | Ga0207510_1029482 | F006084 | MPIIEKTIRFAAIALAVLFIGLSLLGIFGAWFVDRKATDVALKGFGLIETGVQVVDAGVGRVNDLVATSKMEVRQASETITAVGAQPQANR |
| Ga0207510_103101 | Ga0207510_1031011 | F000610 | MTTLSGTSRYIFILVGLILILQGPVATGQSKMKGVTVSYEQSGTSRIARFTNSNPYPVRVEFSYQGTRTRGSAEASGEGAVLIAAEFSATYGAVGLSIRSVRIKVVMRGD |
| Ga0207510_103291 | Ga0207510_1032912 | F002544 | MAQGMDTTQAGTDDYVEFWAAGQTVKGEFHCSECGYGVTIVRTLPLCPMCGCTSWEQSAWSPFTRAQQPL |
| Ga0207510_103401 | Ga0207510_1034012 | F066928 | MSPADRYRALAAHLRTRAAREQSPVLRTQWAKLAQCYVRLAGQADQNSRADIVYEFDRSVRRGDVGGEPA |
| Ga0207510_103726 | Ga0207510_1037262 | F090480 | MNKIIACIVLAVVSGFSFTVARAMPLAPIWTEQAGLTIPVADGCGFNRYRDARGICRKKYVITRHRGPQPFYTGCGGLNSHRVCNL |
| Ga0207510_103902 | Ga0207510_1039022 | F042319 | MTDITYQTATAGIASPSALLSRIAAWCTHFAEGTREGREIAARYHALAQLSRPELARRGLNRHMIARVALTGY |
| Ga0207510_104002 | Ga0207510_1040021 | F027674 | MATAFIRHRVRETAKRLQARYDAQKISRDAKNDIFVVTDFDGTIASQLGQSAEATDFCVFVFGQSGELLAQWHSVPSADELAAAVKKSD |
| Ga0207510_104248 | Ga0207510_1042482 | F046561 | EAEQHYGHSGITMWRENMKWSAWLQTYPSAEEKRQTAEEKSETASASR |
| Ga0207510_104351 | Ga0207510_1043511 | F102094 | MYVLIIVIGVLSQGASIVPVGVTSQVVGKFKNLDECKAAAKQPHAAGPIAD |
| Ga0207510_104377 | Ga0207510_1043773 | F070178 | MLVAVAVAYFEPAFLLAAQRAFISSESLFRPAGVSAPFFRVEDFCFPPAFLL |
| Ga0207510_104509 | Ga0207510_1045092 | F032172 | TMMRLEAEEPVQIIRGKFGPSGGIVPELDKDGQVMPTGHFNNRLGFHALMRAVGVDERIMTLNELFANPKLNSEITRQLAAGQRSVSISGEDAAKTGEF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |