3300026724: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN410 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026724
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054778 | Ga0208842
• Sample Name: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN410 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18195758
• Sequencing Scaffolds: 14
• Novel Protein Genes: 17
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia soli	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Willamette National Forest, Oregon, USA
• Coordinates
  • Lat. (^o): 44.20517707
  • Long. (^o): -122.1284473
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F002216	Metagenome / Metatranscriptome	582	Y
F003950	Metagenome / Metatranscriptome	460	Y
F009903	Metagenome / Metatranscriptome	311	Y
F010699	Metagenome / Metatranscriptome	300	Y
F015682	Metagenome / Metatranscriptome	253	Y
F037955	Metagenome / Metatranscriptome	167	N
F040089	Metagenome / Metatranscriptome	162	Y
F040397	Metagenome	162	Y
F044126	Metagenome / Metatranscriptome	155	Y
F052812	Metagenome / Metatranscriptome	142	Y
F057773	Metagenome / Metatranscriptome	136	Y
F076660	Metagenome / Metatranscriptome	118	Y
F088851	Metagenome / Metatranscriptome	109	Y
F097737	Metagenome	104	Y
F099774	Metagenome / Metatranscriptome	103	N
F105122	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208842_100105	All Organisms → cellular organisms → Bacteria	1353
Ga0208842_100402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	841
Ga0208842_100489	Not Available	786
Ga0208842_100490	Not Available	786
Ga0208842_100864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	660
Ga0208842_101204	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	607
Ga0208842_101493	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571
Ga0208842_101739	Not Available	548
Ga0208842_101865	Not Available	539
Ga0208842_101882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia soli	538
Ga0208842_101888	All Organisms → cellular organisms → Bacteria	538
Ga0208842_102017	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529
Ga0208842_102409	Not Available	504
Ga0208842_102435	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208842_100105	Ga0208842_1001051	F009903	LWEDGENEQAFLDACGAIGVKPNAIVNTQKERYLVSEFLKHPVSWLETEILYHSYTTRGEAQEVANGI
Ga0208842_100402	Ga0208842_1004021	F037955	PSSAGSGLSGVTPLNLDASVDVRALSGAAQGYGLGLAFRGDGNGDLYAFLIEDHAVAIQKWVSNGAKITGEPAPVSVSDLRVGSSGRLRAVATTIDGGQAVHLELWLNGKKLVDYTDRDNPYTRGYMGLYVESISDSPSTAAAEFDNFTASQV
Ga0208842_100489	Ga0208842_1004891	F010699	ADPLTGLPLYSATDSRLHLGNEPTRLPESIVCRSRMQADFYSVYESKMDTTLGWYAARLPGFKKTHAYAASRSQDTFYKPDGTIIVSVTGSAGKEGENTDAYSVTYALLQPGLSEKSIISLNEQKLTCP
Ga0208842_100490	Ga0208842_1004901	F044126	EAGRPGEKGRRHMVDLVCACRVMHRLDFKEASETVKAVDAELEALLRVVWGQSPRERQRDLCFYLAKYPYKHFVFKNGRPLDPDGQPLRADLLVANLLPVGLILDNVLEVIDEVIRREEVIELPQSLLFKRQLIGLWELIDQQLTVEGRPLSNWTISSGSRSLRFLEFPTQRVQWDRLRARYRQLSTYDKGAVRKLKEIDLIEMIGDVDRKSKQWATQILYFSSLWFTELERQLADPECRAPAMELTSYFNNASWASLARV
Ga0208842_100864	Ga0208842_1008641	F015682	MARRTRLAAVVTLATINVFTLAAGITVARMLPPRLAALKVPTVAAN
Ga0208842_101204	Ga0208842_1012041	F040397	SLADVKFTGGPTLDRSLPIDMTQAPSIPIQRGQQVYTIQSMRGVITIAEPPGIGSTGAQRVVGAGIALAATAGGRYIIALAPKAKPDPNESPVEAVVYTVTW
Ga0208842_101493	Ga0208842_1014932	F052812	TTKNLGHVINEVWGPYKESLGGQLPNNLETLVISYRYSCDANYSHCANKEEFHVAKPYGLVKWQHQSLAADGNYKAADNVTYFNRVVSGQTLPVTSCF
Ga0208842_101739	Ga0208842_1017392	F076660	MDAQKTYVLWLNRNTQEQAFSGRGARARQVAAHLSAEVRAVRANTDP
Ga0208842_101865	Ga0208842_1018651	F057773	VADNVPLCGGSGAAEQVAEKPREILFRPGIAYDAFDPARGDVKSSDKGLSAVALIFELASLDLARHQRQPRRHALQRLNAGHFVDGDRAMSVIRTGCGLVNRTDIRALAIKGGIRFRGQPVTDAMGLEVCLFFKKRPTERCEIFGTRPRRMASSAISRWLHWLIGRSLSDGFSHVIATT
Ga0208842_101882	Ga0208842_1018821	F040089	RRAGLAVRPRDLSCARAIRAVLTAIRLGHDGYQAVTSEIGKYRNVVGRDRHRARKSKSPSSFAHATAKDTATRIAPAIITMANTPA
Ga0208842_101888	Ga0208842_1018881	F088851	MARRCREFVDSRLRRSPPDRASAVPYGQAGENAMRFPRLAHRSAAAHKLHSTPQQDRMNLISGKGETSSRLP
Ga0208842_102017	Ga0208842_1020171	F099774	VSYLKPIVAGLIASVVIYFCFLAWLHWKTVSFVKEQGAMGLIGVTGAQPYVLHSPSFWALAIIAFGVVFFLFRNA
Ga0208842_102064	Ga0208842_1020642	F105122	TQVLRQAGFQVKVNRFGFTNKVWDYSPVGEAPPGSTITLEVGPF
Ga0208842_102243	Ga0208842_1022432	F000072	MDIERTIDEIEQLQEMFEAPDIRPLSASDISAANRRHDEMLAHSPWFRIWHDFGVCGRSESIER
Ga0208842_102409	Ga0208842_1024092	F003950	MRDSQPMIASKLELSPCAVSVLGQLFVEGPTSDDNITSKAGRCDLVSAGLAFHEAGLSSLTPDGVRLAREWDLCSLYARRDRRWYSKVRAN
Ga0208842_102435	Ga0208842_1024351	F002216	VLKTTWKTEYKGHVIELENRIRLERLIVDGKEIAREPGATWEPRSFQATIPDGNRSMKVDANTRFSKSPRGLRFTVSVDGKEIYSEVKWPPRWYLPFAAVGLILASVVLR
Ga0208842_102464	Ga0208842_1024641	F097737	VSSNNRKPGIHVAWTTVTYRSIALLVLAVAAVCFIAMRMAFPQFTEAGIKKAD