Metagenome / Metatranscriptome Family F099774

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099774
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	74 residues
Representative Sequence	VPYLKPVLAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFLFRNA
Number of Associated Samples	77
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.63 %
% of genes near scaffold ends (potentially truncated)	26.21 %
% of genes from short scaffolds (< 2000 bps)	70.87 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.175 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.388 % of family members)
Environment Ontology (ENVO)	Unclassified (27.184 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.660 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.33% β-sheet: 12.00% Coil/Unstructured: 22.67%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01638	HxlR	4.90
PF13432	TPR_16	1.96
PF13302	Acetyltransf_3	1.96
PF02350	Epimerase_2	1.96
PF03069	FmdA_AmdA	1.96
PF01850	PIN	1.96
PF06762	LMF1	1.96
PF00076	RRM_1	0.98
PF12867	DinB_2	0.98
PF13456	RVT_3	0.98
PF07676	PD40	0.98
PF00990	GGDEF	0.98
PF04519	Bactofilin	0.98
PF00069	Pkinase	0.98
PF13487	HD_5	0.98
PF12276	DUF3617	0.98
PF04116	FA_hydroxylase	0.98
PF13414	TPR_11	0.98
PF10091	Glycoamylase	0.98
PF01717	Meth_synt_2	0.98
PF02368	Big_2	0.98
PF02586	SRAP	0.98
PF04191	PEMT	0.98
PF01966	HD	0.98
PF05170	AsmA	0.98
PF07228	SpoIIE	0.98
PF01436	NHL	0.98
PF00072	Response_reg	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	4.90
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92
COG0381	UDP-N-acetylglucosamine 2-epimerase	Cell wall/membrane/envelope biogenesis [M]	1.96
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	1.96
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	1.96
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.98
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.98
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.98
COG2982	Uncharacterized conserved protein AsmA involved in outer membrane biogenesis	Cell wall/membrane/envelope biogenesis [M]	0.98
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.17 %
Unclassified	root	N/A	5.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.17 %
Unclassified	root	N/A	5.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.17 %
Unclassified	root	N/A	5.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	82.52 %
Unclassified	root	N/A	5.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	69.90 %
Unclassified	root	N/A	5.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.88 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	68.93 %
Unclassified	root	N/A	5.83 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.91 %
Fimbriimonadia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia	0.97 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	68.93 %
Unclassified	root	N/A	5.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.91 %
Fimbriimonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales	0.97 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	68.93 %
Unclassified	root	N/A	5.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.91 %
Fimbriimonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae	0.97 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	68.93 %
Unclassified	root	N/A	5.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.91 %
Fimbriimonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas	0.97 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	68.93 %
Unclassified	root	N/A	5.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.91 %
Fimbriimonas ginsengisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas → Fimbriimonas ginsengisoli	0.97 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	68.93 %
Unclassified	root	N/A	5.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.91 %
Fimbriimonas ginsengisoli Gsoil 348	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas → Fimbriimonas ginsengisoli → Fimbriimonas ginsengisoli Gsoil 348	0.97 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908043\|A2_c1_ConsensusfromContig11589	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M
3300000955\|JGI1027J12803_100812362	Not Available	634	Open in IMG/M
3300000955\|JGI1027J12803_107548270	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	947	Open in IMG/M
3300005167\|Ga0066672_10301272	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1041	Open in IMG/M
3300005178\|Ga0066688_10055885	All Organisms → cellular organisms → Bacteria → Acidobacteria	2299	Open in IMG/M
3300005344\|Ga0070661_101128158	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300005434\|Ga0070709_10170827	All Organisms → cellular organisms → Bacteria → Acidobacteria	1519	Open in IMG/M
3300005436\|Ga0070713_101737726	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300005439\|Ga0070711_100390750	Not Available	1127	Open in IMG/M
3300005542\|Ga0070732_10022413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3563	Open in IMG/M
3300005602\|Ga0070762_10171718	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1311	Open in IMG/M
3300005602\|Ga0070762_10517453	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300005602\|Ga0070762_10517512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300005921\|Ga0070766_10018653	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3666	Open in IMG/M
3300005921\|Ga0070766_10090922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1792	Open in IMG/M
3300005944\|Ga0066788_10022300	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1407	Open in IMG/M
3300005952\|Ga0080026_10120954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300005993\|Ga0080027_10025878	All Organisms → cellular organisms → Bacteria → Acidobacteria	2094	Open in IMG/M
3300005994\|Ga0066789_10072155	All Organisms → cellular organisms → Bacteria → Acidobacteria	1496	Open in IMG/M
3300006050\|Ga0075028_100215023	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1043	Open in IMG/M
3300006057\|Ga0075026_101069393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300006059\|Ga0075017_100018377	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4526	Open in IMG/M
3300006173\|Ga0070716_100000182	All Organisms → cellular organisms → Bacteria	24723	Open in IMG/M
3300006173\|Ga0070716_100901635	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300006176\|Ga0070765_100121120	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2294	Open in IMG/M
3300006176\|Ga0070765_102082658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300007258\|Ga0099793_10161786	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1063	Open in IMG/M
3300009098\|Ga0105245_10535464	Not Available	1192	Open in IMG/M
3300009101\|Ga0105247_10175631	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300010375\|Ga0105239_12166233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300012189\|Ga0137388_10211746	All Organisms → cellular organisms → Bacteria	1751	Open in IMG/M
3300012189\|Ga0137388_10532032	All Organisms → cellular organisms → Bacteria → Acidobacteria	1092	Open in IMG/M
3300012200\|Ga0137382_10234921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1267	Open in IMG/M
3300012202\|Ga0137363_10080605	All Organisms → cellular organisms → Bacteria	2423	Open in IMG/M
3300012202\|Ga0137363_11686033	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300012210\|Ga0137378_10593222	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1018	Open in IMG/M
3300012918\|Ga0137396_10167549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1606	Open in IMG/M
3300012925\|Ga0137419_10014047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4464	Open in IMG/M
3300012944\|Ga0137410_11017875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300013296\|Ga0157374_10008271	All Organisms → cellular organisms → Bacteria	8881	Open in IMG/M
3300015197\|Ga0167638_1039423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1058	Open in IMG/M
3300015241\|Ga0137418_10388517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1141	Open in IMG/M
3300015371\|Ga0132258_13431946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1087	Open in IMG/M
3300015374\|Ga0132255_102630010	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300016422\|Ga0182039_11254687	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300016445\|Ga0182038_10004336	All Organisms → cellular organisms → Bacteria → Acidobacteria	7577	Open in IMG/M
3300016445\|Ga0182038_10310226	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1293	Open in IMG/M
3300018032\|Ga0187788_10023108	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1993	Open in IMG/M
3300020579\|Ga0210407_10132090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1915	Open in IMG/M
3300020579\|Ga0210407_10990304	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300020581\|Ga0210399_11224426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300020583\|Ga0210401_10001016	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	33778	Open in IMG/M
3300020583\|Ga0210401_10001016	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	33778	Open in IMG/M
3300020583\|Ga0210401_10008319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10308	Open in IMG/M
3300021088\|Ga0210404_10077215	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1632	Open in IMG/M
3300021088\|Ga0210404_10105423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1428	Open in IMG/M
3300021402\|Ga0210385_11259503	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300021403\|Ga0210397_10008054	Not Available	6377	Open in IMG/M
3300021403\|Ga0210397_10106820	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1899	Open in IMG/M
3300021403\|Ga0210397_10185681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1477	Open in IMG/M
3300021404\|Ga0210389_10860469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	707	Open in IMG/M
3300021559\|Ga0210409_10744550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	852	Open in IMG/M
3300024330\|Ga0137417_1057949	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2034	Open in IMG/M
3300025911\|Ga0207654_10875009	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300025916\|Ga0207663_10354821	Not Available	1111	Open in IMG/M
3300026281\|Ga0209863_10027447	All Organisms → cellular organisms → Bacteria → Acidobacteria	1733	Open in IMG/M
3300026294\|Ga0209839_10074648	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300026317\|Ga0209154_1010305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4592	Open in IMG/M
3300026322\|Ga0209687_1029103	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1799	Open in IMG/M
3300026557\|Ga0179587_10668302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300026724\|Ga0208842_102017	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300026920\|Ga0208575_1011024	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	857	Open in IMG/M
3300027432\|Ga0209421_1070251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas → Fimbriimonas ginsengisoli → Fimbriimonas ginsengisoli Gsoil 348	706	Open in IMG/M
3300027842\|Ga0209580_10029887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2470	Open in IMG/M
3300028536\|Ga0137415_10000892	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29262	Open in IMG/M
3300028792\|Ga0307504_10090119	All Organisms → cellular organisms → Bacteria → Acidobacteria	958	Open in IMG/M
3300029636\|Ga0222749_10019978	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2763	Open in IMG/M
3300031545\|Ga0318541_10035016	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2514	Open in IMG/M
3300031564\|Ga0318573_10500635	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300031718\|Ga0307474_10013585	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5892	Open in IMG/M
3300031718\|Ga0307474_10150307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1757	Open in IMG/M
3300031720\|Ga0307469_10000193	All Organisms → cellular organisms → Bacteria → Acidobacteria	23820	Open in IMG/M
3300031720\|Ga0307469_10008009	All Organisms → cellular organisms → Bacteria	4956	Open in IMG/M
3300031720\|Ga0307469_10730541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	901	Open in IMG/M
3300031720\|Ga0307469_11462516	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300031754\|Ga0307475_10122542	All Organisms → cellular organisms → Bacteria	2049	Open in IMG/M
3300031754\|Ga0307475_11404154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300031768\|Ga0318509_10565955	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300031781\|Ga0318547_10120601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1519	Open in IMG/M
3300031820\|Ga0307473_10981346	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300031820\|Ga0307473_11108814	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300031879\|Ga0306919_10100489	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2034	Open in IMG/M
3300031896\|Ga0318551_10722083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300031962\|Ga0307479_10118278	All Organisms → cellular organisms → Bacteria	2583	Open in IMG/M
3300031962\|Ga0307479_10127232	All Organisms → cellular organisms → Bacteria	2490	Open in IMG/M
3300031962\|Ga0307479_11308931	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300032094\|Ga0318540_10428229	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300032180\|Ga0307471_100025733	All Organisms → cellular organisms → Bacteria	4427	Open in IMG/M
3300032180\|Ga0307471_100229076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1891	Open in IMG/M
3300032180\|Ga0307471_101877986	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300032180\|Ga0307471_103218989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300032205\|Ga0307472_100804505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.23%
Host-Associated	Host-Associated	7.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.32%
Plants	Host-Associated → Plants	7.77%
Aquatic	Environmental → Aquatic	2.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.83%
Sediment	Environmental → Aquatic → Sediment	2.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.02%
Loam	Environmental → Terrestrial → Soil → Loam	16.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.39%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	17.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.59%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.94%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.97%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908043	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015197	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026724	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN410 (SPAdes)	Environmental	Open in IMG/M
3300026920	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A2_c1_00722560	2124908043	Soil	VPYLKPIVAGLIASVVIYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQAYVLHSPSFWALAIIAFGVAFFLFRSQ
JGI1027J12803_1008123621	3300000955	Soil	VPYLKPVLAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPAFWALAVIAFGV
JGI1027J12803_1075482701	3300000955	Soil	VPYLKPVLAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPAFWALAIIAFGVVFFLFRNA*
Ga0066672_103012723	3300005167	Soil	VPYLKPVLAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFLFRNA*
Ga0066688_100558853	3300005178	Soil	VPYLKPVLAGLLASAITYLCFITWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFLFRNA*
Ga0070661_1011281581	3300005344	Corn Rhizosphere	VPYLRPIVAGLIASVVTYFCFLAWLHWKTVSFVKEQGETGLVAVASGQAYVLQSPSFWALAIIAFGVAFFLFRSQ*
Ga0070709_101708272	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	IVYLCFLTWLHWKAVSFVKEQGATGLIGIKGAQPYVLHSPSFWALAIIAFGVVFFLFRNA
Ga0070713_1017377261	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKSSSVYGGNRVILSLRACEAYVPYLKPVLAGLLASLITYLCFLTWLHWKAVSFVKEQGATGLIGITGAQPYVLHSPSFWALAIIAFGVVFFLFRNA*
Ga0070710_106233891	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	YLCFLTWLHWKAVSFVKEQGATGLIGITGAQPYVLHSPSFWALAIIAFGVVFFLFRNA*
Ga0070711_1003907501	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VPYLRPIVAGLIASVVTYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQVYVLHSTSFWALAIIAFGVAFFLFRSQ*
Ga0070732_100224133	3300005542	Surface Soil	VPYLKPVLAGLLASAITYLCFLAWLHWKALSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIVAFGVVFFLFRNA*
Ga0070762_101717182	3300005602	Soil	VPYLKPVLAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFLFRKA*
Ga0070762_105174533	3300005602	Soil	MPYLKPVLAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFLFRNA*
Ga0070762_105175121	3300005602	Soil	LAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAFIAFGIVFFLFRIP*
Ga0070766_100186534	3300005921	Soil	MPYLKPVLAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFSFRKA*
Ga0070766_100909223	3300005921	Soil	VPYLKPVLAALLASAIVYLCFLSWLHWKAVSLVKEQRATGLIAVTGAQVYVLHSPSFWALAFIAFGIVFFLFRIP*
Ga0066788_100223002	3300005944	Soil	VPYLKPIVAGLIASVVIYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQAYVLHSPSFWALAIIAFGVAFFLFLSQ*
Ga0080026_101209543	3300005952	Permafrost Soil	VPYLKPIVAGLIASVVIYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQAYVLHSPSFWALAI
Ga0080027_100258784	3300005993	Prmafrost Soil	VPYLKPILAGLIASVVIYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQAYALHSPSFWALAIVAFGVAFFLFRSQ*
Ga0066789_100721551	3300005994	Soil	VPYLKPIVAGLIASVVIYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQAYVLHSPSFWALAIIAFGVAFFLFRSQ*
Ga0075028_1002150232	3300006050	Watersheds	VPYLKPVLAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIGVTGAQVYVLHSPSFWALAIIAFGVVFFLFRNA*
Ga0075026_1010693931	3300006057	Watersheds	EACVPYLKPLVAGLIASVVIYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQAYVLHSPSFWALAIIAFGVAFFLFRSL*
Ga0075017_1000183777	3300006059	Watersheds	VPYLKPVLAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIGVTGAQVYVLHSPLFWALAIIAFGVVFFLFRNA*
Ga0070716_10000018220	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VPFQKPVLAGLLASAIVYLCFLTWLHWKVVALVKEQGATGLIAVTGAQVYVLHSPAFWALAIIAFGVVFFLFRNA*
Ga0070716_1009016352	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LKPVLAGLLASAIIYLCFLTWRHWKAVSFVKEQGATGLIGIKGAQPYVLHSPSFWALAIIAFGVVFFLFRNA*
Ga0070765_1001211201	3300006176	Soil	VVPYLKPVLAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAFIAFGIVFFLFRIP*
Ga0070765_1020826582	3300006176	Soil	VSYLKPIMAGLIASVVIYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQAYVLHSPSFWALAIIAFGVAFFLFRSQ*
Ga0099793_101617861	3300007258	Vadose Zone Soil	MRTQLSPCAWEAHVPYLKPVLAGLLASVITYFCFLTWLHWKAFSLVKEQGATGLVGVDGGQVNVLQSPSFWSLAILAFGVVFFLFRNA*
Ga0105245_105354641	3300009098	Miscanthus Rhizosphere	VAGLIASVVTYFCFLAWLHWKTVSFVKEQGETGLVAVANRQAYVLQSPSFWALAIIAFGVAFFLFRSQ*
Ga0105247_101756312	3300009101	Switchgrass Rhizosphere	VAGLIASVVTYFCFLAWLHWKTVSFVKEQGETGLVAVASRQAYVLQSPSFWALAIIAFGVAFFLFRSQ*
Ga0105239_121662332	3300010375	Corn Rhizosphere	DGEACVPYLRPIVAGLIASVVTYFCFLAWLHWKTVSFVKEQGETGLVAVASRQAYVLQSPSFWALAIIAFGVAFFLFRSQ*
Ga0137388_102117461	3300012189	Vadose Zone Soil	AITYLCFLTWIHMKVTSAARERGTTGLIAVAGGATYVLHSSAFWALAIIAFGVAFFLFREA*
Ga0137388_105320321	3300012189	Vadose Zone Soil	AITYLCFLTWIHMKVTSAARERGTTGLIAVAGGATYVLHSSTFWALAIIAFGVAFFLFREA*
Ga0137382_102349212	3300012200	Vadose Zone Soil	LAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIGVTGAQVYVLRSPSFWALAIIAFGVAFFLFRNA*
Ga0137363_100806053	3300012202	Vadose Zone Soil	VSYLKPVLAGLLASVITYLCFLTWLHWKAVSLVKEQGAMGLIGVTGAQVYVLHSPSFWALAIVAFGVVFFLFSNA*
Ga0137363_116860331	3300012202	Vadose Zone Soil	VPYLKPVLAGLLASVLTYLCFLTWLHWKAVSLVKEQGATGLIGVTGAQVFVLHSPSFWALAIIAFGVVFFLFRNT*
Ga0137378_105932222	3300012210	Vadose Zone Soil	VPYLKPVFAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFLFRKA*
Ga0137396_101675492	3300012918	Vadose Zone Soil	MRTQLSPCVWEARVPYLKPVLAGLLASVITYFCFLIWLHWKAFSLVKEQGATGVIGVAGGQVYVLQSPTFWELAIIAFGVVFFLFRNA*
Ga0137419_100140471	3300012925	Vadose Zone Soil	LAGLLASVITYFCFLTWLHWKAFSLVKEQGATGLVGVDGGQVNVLQSPSFWSLAILAFGVVFFLFRNA*
Ga0137410_110178752	3300012944	Vadose Zone Soil	MRTQLSPCAWEAHVPYLKPVLAGLLASVITYFCFLTWLHWKAFSLVKEQGATGLVGVDGGQVNVLQSPSFWSLAILAF
Ga0157374_1000827112	3300013296	Miscanthus Rhizosphere	VAGLIASVVTYFCFLAWLHWKTVSFVKEQGETGLVAVASGQAYVLQSPSFWALAIIAFGVAFFLFRSQ*
Ga0167638_10394231	3300015197	Glacier Forefield Soil	VPYLKPIVAGLIASVVIYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQAYVLHSPFFWALAIIAFGVAFFLFRSQ*
Ga0137418_103885171	3300015241	Vadose Zone Soil	TVRRASQSLEHAWGASFMRTQLSPCVWEARVPYLKPVLAGLLASVITYFCFLIWLHWNAFSLVKEQGATGVIGVAGGQVYVLQSPTFWELAIIAFGVVFFLFRNA*
Ga0132258_134319462	3300015371	Arabidopsis Rhizosphere	LAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPAFWALAIIAFGVVFFLFRNA*
Ga0132255_1026300102	3300015374	Arabidopsis Rhizosphere	LAGLLASAIVYLCFLTWLHWKAVALVKEQGATGLIAVTGAQVYVLHSPAFWALAIIAFGIVFFLFRNA*
Ga0182039_112546871	3300016422	Soil	DAHMSSVKALLAGLLASAITYLCFLTWLHWKAVSLVQEQRATGQVGVIGGQGYVLHLPSFWVLAIIAFGVVFFAFRKA
Ga0182038_100043365	3300016445	Soil	MSSVKALLAGLLASAITYFSFLTWLHWKAVSLVQEQGATGLVGVIGGQGYVLHLPSFWVLAIIAFGAVFFAFRKA
Ga0182038_103102262	3300016445	Soil	MSSVKALLAGLLASAITYFCFLTWLHWKAVSLVQEQGATGQVGVIGGQGYVLHLPSFWVLAIIAFGVVFFAFRKA
Ga0187788_100231083	3300018032	Tropical Peatland	MEAHIPYLKPVLAGLLASAITYLCFLTWLHWKVVSLVKEQGATGLIAVTGAQVYVLHSPAFWALAIIAFGVAFFLFRNA
Ga0210407_101320903	3300020579	Soil	VPYLKPVLAGLLASVITYLGFLTWLHWKAVSLAKEQGATGLIGVSGAQVYVLHSWSFWALAIIAFGVVFFLFRNA
Ga0210407_109903041	3300020579	Soil	VPYLKPVLAGLLASAIVYLCFLTWLHWKAVALVKEQGATGLIAVTGAQVYVLHSPAFWALAIIAFGVVFFLFRNA
Ga0210399_112244262	3300020581	Soil	VPYLKSVLAGLLASVITYLGFLTWLHWKAVSLAKEQGATGLIGVSGAQVYVLHSWSFWALAIIAFGVVFFLFRNA
Ga0210401_1000101614	3300020583	Soil	VPYLKPVLAGLLASAIVYLCFLSWLHWKAVSLVKEQRATGLIAVTGAQVYVLHSPSFWALAFIAFGIVFFLFRIP
Ga0210401_1000101618	3300020583	Soil	MPYLKPVLAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFSFRKA
Ga0210401_100083195	3300020583	Soil	VPYLKPVLAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFLFRKA
Ga0210404_100772152	3300021088	Soil	VPYLKPVLAGLLASAIVYLCLLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLRSPSFWALAIIAFGVVFFLFRNA
Ga0210404_101054232	3300021088	Soil	VPYLKPVLAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWLLALIAFGVVFFLFRNA
Ga0210385_112595032	3300021402	Soil	KPVLAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFSLRKA
Ga0210397_100080541	3300021403	Soil	VPYLKPVLAALLASAIVYLCFLSWLHWKAVSLVKEQRATGLIAVTGAQVYVLHSPSFWALAFIAFGIVFFLFRIP
Ga0210397_101068201	3300021403	Soil	SAITYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFLFRKA
Ga0210397_101856814	3300021403	Soil	VPYLKPVLAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIA
Ga0210389_108604691	3300021404	Soil	MPYLKPVLAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAI
Ga0210409_107445502	3300021559	Soil	MPYLKPVLAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWLLALIAFGVVFFLFRNA
Ga0137417_10579493	3300024330	Vadose Zone Soil	MRTQLSPCAWEAHVPYLKPVLAGLLASVITYFCFLTWLHWKAFSLVKEQGATGLVGVDGGQVNVLQSPSFWSLAILAFGVVFFLFRNA
Ga0207654_108750092	3300025911	Corn Rhizosphere	EACVPYLRPIVAGLIASVVTYFCFLAWLHWKTVSFVKEQGETGLVAVASGQAYVLQSPSFWALAIIAFGVAFFLFRSQ
Ga0207663_103548212	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VPYLRPIVAGLIASVVTYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQAYVLHSPSFWALAIIAFGVAFFLFRSQ
Ga0209863_100274473	3300026281	Prmafrost Soil	VPYLKPILAGLIASVVIYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQAYALHSPSFWALAIVAFGVAFFLFRSQ
Ga0209839_100746481	3300026294	Soil	VPYLKPILAGLIASVVIYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQAYALHSPSFWALAIVAFGV
Ga0209154_10103051	3300026317	Soil	VPYLKPVLAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFLFRNA
Ga0209687_10291033	3300026322	Soil	LAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFLFRNA
Ga0179587_106683021	3300026557	Vadose Zone Soil	EGTVRRASQSLEHAWGASFMRTQLSPCAWEAHVPYLKPVLAGLLASVITYFCFLTWLHWKAFSLVKEQGATGLVGVDGGQVNVLQSPSFWSLAILAFGVVFFLFRNA
Ga0208842_1020171	3300026724	Soil	VSYLKPIVAGLIASVVIYFCFLAWLHWKTVSFVKEQGAMGLIGVTGAQPYVLHSPSFWALAIIAFGVVFFLFRNA
Ga0208575_10110242	3300026920	Soil	VPYLKPVLAGLLASAIVYLCFLTWLHWKAVSFVKEQGAMGLIGVTGAQPYVLHSPSFWALAIIAFGVVFFLSRNA
Ga0209421_10702511	3300027432	Forest Soil	NGEACVPYLKPIVAGLIASVVIYFCFLAWLHWKTVSFVKEQGDTGLVAVAGGQAYVLHSPSFWALAIIAFGVAFFLFRSQ
Ga0209580_100298872	3300027842	Surface Soil	LAGLLASAITYLCFLAWLHWKALSLVKEQGATGLIAVTGAQVYVLHSPSFWALPIVAFGVVFFLFRNA
Ga0137415_1000089223	3300028536	Vadose Zone Soil	VPYLKPVLAGLLASVITYFCFLTWLHWKAFSLVKEQGATGLVGVDGGQVNVLQSPSFWSLAILAFGVVFFLFRNA
Ga0307504_100901192	3300028792	Soil	VPYLKPVLAGLLASVITYLCFLTWLHWKAVSLVKEQGATGLIGVTGAQVYVLHSPSFWALAIIAFGVVFFLFRNA
Ga0222749_100199785	3300029636	Soil	VPYLKPVLAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGDVFFLFRKA
Ga0318541_100350161	3300031545	Soil	MSSVKALLAGLLASAITYFCFLTWLHWKAVSLVQEQGATGLVGVIGGQGYVLHLPSFWVLAIIAFGAVFFAFRKA
Ga0318573_105006351	3300031564	Soil	MSSVKALLAGLLASAITYLCFLTWLHWKAVSLVQEQRATGQVGVIGGQGYVLHLPSFWVLAIIAFGVVFFAFRKA
Ga0307474_100135859	3300031718	Hardwood Forest Soil	VPYLRPVLAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYLLHSPSFWALAIIGFGVVFFLFRKA
Ga0307474_101503071	3300031718	Hardwood Forest Soil	VPYLKPFLAGLLASAITYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFLFRNA
Ga0307469_1000019311	3300031720	Hardwood Forest Soil	VPYLKPVLAGLLASAIVYLCFLTWLHWKAVALVKEQGATELIAVTGAQVYVLHSPAFWALAIIAFGVVFFLFRNA
Ga0307469_100080093	3300031720	Hardwood Forest Soil	VPYLKPVLAGLLASAIIYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPAFWALAIIAFGVVFFLFRNA
Ga0307469_107305412	3300031720	Hardwood Forest Soil	VPYLKPIVAGLIASVVTYFCFLAWLHWKTVSFVKEQGDTGLVAFAGGQAYVLHSPSFWALAIIAFGVAFFLFRSQ
Ga0307469_114625162	3300031720	Hardwood Forest Soil	MLGGWEMHMPYLKPILAGLLASVITYLFFLTWLHWKAVSFVKEQGATGLFGVTGGNVYVLHSPSFWALAVLAFGVVFFLFRNS
Ga0307475_101225421	3300031754	Hardwood Forest Soil	VPYLKPVLAGLLASAITYLCVLTWLHWKAVSLVKEQGAMGLIGVTGAQPYVLHSPSFWALAIIAFGVV
Ga0307475_114041541	3300031754	Hardwood Forest Soil	VPYLKPVLAGLLASAIVDLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYLLHSPSFWALAIIG
Ga0318509_105659551	3300031768	Soil	MSSVKALLAGLLASAITYLCFLTWLHWKAVSLVQEQRATGQVGVIGGQGYVLHLPSFWVLAIIAFGAVFFAFRKA
Ga0318547_101206012	3300031781	Soil	MSSVKALLAGLLASAITYFCFLTWLHWKAVSLVQEQGATGQVGVIGGQGYVLHLPSFWVLAIIAFGAVFFAFRKA
Ga0307473_109813461	3300031820	Hardwood Forest Soil	EMHMPYLKPILAGLLASVITYLFFLTWLHWKAVSFVKEQGATGLFGVTGGNVYVLHSPSFWALAVLAFGVVFFLFRNS
Ga0307473_111088141	3300031820	Hardwood Forest Soil	VPYLKPVLAGLLASAIVYLCFLTWLHWKAVSFVKEQGAMGLIGVTGAQPYVLHSPSFWALAIIAFGVVFFLFRKA
Ga0306919_101004891	3300031879	Soil	MSSVKALLAGLLASAITYFCFLTWLHWKAVSLVQEQGATGLVGVIGGQGYVLHLPSFWVLAIIAFGVVFFAFRKA
Ga0318551_107220832	3300031896	Soil	MSSVKALLAGLLASAITYFCFLTWLHWKAVSLVQEQGATGLVGVIGGQGYVLHLPSFWVLAIIA
Ga0307479_101182784	3300031962	Hardwood Forest Soil	VPYLKPVLAGLLASAITYLCVLTWLHWKAVSLVKEQGAMGLIGVTGAQPYVLHSPSFWALAIIAFGVVFFLFRNA
Ga0307479_101272324	3300031962	Hardwood Forest Soil	VAYLKPVLAGLLASGIVYLCFLTWLHWKAVSFVKEQGAMGLIGVTGAQPYVLHSPSFWAL
Ga0307479_113089312	3300031962	Hardwood Forest Soil	VPYLKPVLAGLLASAIVYLCFLTWLHWKAVSFVKEQGAMGLIGVTGAQPYVLHSPSFWALAIIAFGVVFFLFRNA
Ga0318540_104282292	3300032094	Soil	SAITYFCFLTWLHWKAVSLVQEQGATGLVGVIGGQGYVLHLPSFWVLAIIAFGAVFFAFRKA
Ga0307471_1000257333	3300032180	Hardwood Forest Soil	VAYLKPVLAGLLASGIVYLCFLTWLHWKAVSFVKEQGAMGLIGVTGAQPYVLHSPSFWALAIIAFGVVFFLFRKA
Ga0307471_1002290762	3300032180	Hardwood Forest Soil	LAGLLASAITYLCFLTWLHWKAVSFVKEQGATGLIAVTGAQVYVLHSPSFWALAIIAFGVVFFLFRNA
Ga0307471_1018779861	3300032180	Hardwood Forest Soil	VPYLKPVVAGLIASVVTYFCFLARLHWKTVSFVKEQGDTGLVAVAGGQAYVLHSPSFWALAIIAFGVAFFLFRSQ
Ga0307471_1032189892	3300032180	Hardwood Forest Soil	SAITYLCFLTWFHIKATSAARERGTTGLIAVAGGATYVLHSPAFWALAIIAFGVAFFLFREA
Ga0307472_1008045051	3300032205	Hardwood Forest Soil	VPYLKPVLAGLLASAIVYLCFLTWLHWKAVSLVKEQGATGLIAVTGAQVYVLHSPAFWALAVIAFGVVFFLFRNA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099774

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences