Basic Information | |
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Family ID | F105122 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 45 residues |
Representative Sequence | RLMENAGFQVKVNRFGFFNKVFDFSPVGQAPRGSTITLDVGF |
Number of Associated Samples | 96 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 0.00 % |
Associated GOLD sequencing projects | 93 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.31 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (23.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (48.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 24.29% Coil/Unstructured: 75.71% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.31 |
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Visualization |
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Watersheds Peatland Peatland Watersheds Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Grass Soil Surface Soil Agricultural Soil Soil Grasslands Soil Soil Soil Hardwood Forest Soil Soil Soil Tropical Peatland Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Palsa Miscanthus Rhizosphere Rhizosphere Corn Rhizosphere Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
KansclcFeb2_10356790 | 2124908045 | Soil | TDATRLLENAGFQVKVNRFGFSNKVWDYSPVGQAPAGSVITLEVGPF |
2222059976 | 2209111022 | Grass Soil | VTPPKLLENAGFQVKVNRFGFTNKVWDYSPVGQAPRGSTITLDVGF |
JGI1027J12803_1084480522 | 3300000955 | Soil | VPDPIGMDATDATQLLENAGFQVKVNRFGFSNKVWDYSPVGQAPPGSIITLEVGPF* |
Ga0066811_10207361 | 3300005185 | Soil | QLLENAGFQVKVTRFGGFGNKVWNFSPEGQAPPGSVITLAVGPF* |
Ga0070660_1000208661 | 3300005339 | Corn Rhizosphere | QLLQNAGFQVKVNSFINFGKVFAYSPMGQAPPGSVITLDVGPF* |
Ga0070661_1001619613 | 3300005344 | Corn Rhizosphere | ARQLLQNAGFQVKVNTFINFGRVFAYSPMGQAPPGSVITLEVGPF* |
Ga0070692_101838122 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | DPIGMDARDATQLLENAGFQVKVNRLGFGNKVWDFSPVGQAPPGSIITLEVGPF* |
Ga0070705_1001987772 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | PIGMNVQDATQLLENSGFQVKVNSFGFTNKVWDYSPVGEAPAGSTITLEVGPF* |
Ga0066687_104564292 | 3300005454 | Soil | VIGMNADDATRVLENAGFQVKVNRFGFSNKVWDYSPVGQAPPGSTITLDVGPF* |
Ga0070662_1002897931 | 3300005457 | Corn Rhizosphere | QLLQNAGFQVKVNTFINFGRVFSYSPVGQAPPGSVITLEVGPF* |
Ga0073909_106443603 | 3300005526 | Surface Soil | ARDATQLLENAGFQVKINRFGFSNKVWDYSPVGQAPPGSVITLDVGPF* |
Ga0066700_111734143 | 3300005559 | Soil | FQVKVTRFGFSNKVWDFSPVGEAPAGSTITLDVGPF* |
Ga0066703_103647671 | 3300005568 | Soil | AGFQVKVNKFGFTNRVWDYSPVGEAPAGSTITLEVGPF* |
Ga0070762_106185633 | 3300005602 | Soil | QLQGAGFQVQVNRYGPFDRVFDFSPVSEAPRGSTIVLDVGY* |
Ga0070762_107978901 | 3300005602 | Soil | VADATQLLQAAGFQVKVNRYFVGNKVFDFSPVGEAPRGSTITLDVGF* |
Ga0068866_106088392 | 3300005718 | Miscanthus Rhizosphere | RQLLQNAGFQVKVNTFINFGRVFAYSPVGQAPPGSVITLEVGPF* |
Ga0066789_104177912 | 3300005994 | Soil | FQVNVNKVGPGNRVFNYSPTGQAPPGSTITINVGFSFF* |
Ga0074050_120526163 | 3300006577 | Soil | TDATRLLENAGFQVKVNRFGFSNKVWDYSPVGQAPPGSIITLDVGPF* |
Ga0074060_119237131 | 3300006604 | Soil | PIGMDATDATRLLENAGFQVKINRFGFSNKVWDYSPVGQAPPGSVITLDVGPF* |
Ga0079222_110062052 | 3300006755 | Agricultural Soil | ENAGFQVNVHRFGFFNKVFDFSPVGQAPRGSTITLDVGF* |
Ga0066659_110013031 | 3300006797 | Soil | GMDVLQATQVLRQAGFQVKVNKFGFTNKVWDYSPVGQAPPGSTITLDVGPF* |
Ga0066660_114462992 | 3300006800 | Soil | GMNVQDATQVLRQAGFQVKVNRFGFTDKVWVYSPVGEAPPGSTITLEVGPF* |
Ga0079220_117370411 | 3300006806 | Agricultural Soil | VPDPIGMSVQDATRLMENAGFQVNVHRFGFFNKVFDFSPVDQAPRGSTITLDVGF* |
Ga0079219_124098383 | 3300006954 | Agricultural Soil | QVNVHRFGFFNKVFDFSPVDQAPRGSTITLDVGF* |
Ga0099793_104477681 | 3300007258 | Vadose Zone Soil | DYVARLEAAGFQVKVNSFGFTNKVWDYSPVGEAPPGSTITLEVGPF* |
Ga0116113_11585163 | 3300009638 | Peatland | SVAQATQTLQQEGFHVQVNRYGPFNKVFDFSPVSQAPRGSTITLDVGF* |
Ga0126374_109963881 | 3300009792 | Tropical Forest Soil | SPIGMTVEQATQVLQAAGFQVKVNRYFLGNKVFDFSPVGQAPRGSTITLDVGF* |
Ga0126382_117363851 | 3300010047 | Tropical Forest Soil | KVHRFGFFNNKVFDYSPVGQAPQGSTITLDVGPF* |
Ga0134064_102970192 | 3300010325 | Grasslands Soil | ATQVLRQAGFQVKVNRFGFTDKVWVYSPVGEAPPGSTITLEVGPF* |
Ga0134063_101205672 | 3300010335 | Grasslands Soil | AGFQVKVNSFISFGKVFAYSPVGQAPPGSTISLDVGPF* |
Ga0134128_115680152 | 3300010373 | Terrestrial Soil | RLMENAGFQVKVNRFGFFNKVFDFSPVGQAPRGSTITLDVGF* |
Ga0134127_108264261 | 3300010399 | Terrestrial Soil | DARQLLQNAGFQVKVNTFINFGRVFAYSPMGQAPPGSVITLEVGPF* |
Ga0126356_106035891 | 3300010877 | Boreal Forest Soil | DPIGMSVPDATRLLENAGFQVKVNRFGFFNKVFDYSPVGQAPRGSTITLDTGF* |
Ga0137393_107393502 | 3300011271 | Vadose Zone Soil | VIGDTLERATQVLEAAGFAVKVSKFGPFDKVFDYSPATGQYPHGTTVTLDVGF* |
Ga0137388_107797261 | 3300012189 | Vadose Zone Soil | SPIGMSVKDATQLLENAGFQVRVNRFGFFDKVFDFSPVGEAPRGSVITLDTGF* |
Ga0137363_103610362 | 3300012202 | Vadose Zone Soil | QVKVNSFTFFGKVFDYAPVGEAPPGSTITLDVGF* |
Ga0137376_107046111 | 3300012208 | Vadose Zone Soil | ATRLLESAGFQVKVNRFGFSNKVWDYSPVGQAPPGSTITLEVGPF* |
Ga0137384_106790371 | 3300012357 | Vadose Zone Soil | TQVLQAAGFQVKVNRFGFFNKVFDFSPVGQAPRGSTITLDAGF* |
Ga0137384_114042131 | 3300012357 | Vadose Zone Soil | NAGFQVKVNRFGFTNKVWDYSPVGQAPPGSTITLDVGPF* |
Ga0137394_110935802 | 3300012922 | Vadose Zone Soil | PAVIGMNVLQATQVLRQAGFQVKVNKFGFTNKVWDYSPVGEAPAGSTITLEVGPF* |
Ga0134081_101369592 | 3300014150 | Grasslands Soil | LLENAGFQVKVNRFGFSNKVWDYSPVGQAPPGSIITLEVGPF* |
Ga0137409_105563512 | 3300015245 | Vadose Zone Soil | VKVNRFGFSNKVWDYSPVGQAPPGSIITLEVGPF* |
Ga0182035_118948281 | 3300016341 | Soil | LQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF |
Ga0187879_108223811 | 3300017946 | Peatland | ATQTLEQAGFRVQVNRYGPFNKVFDFSPVGQAPRGSTIILDVGF |
Ga0187779_102580781 | 3300017959 | Tropical Peatland | QATQQLEAAGFQVQVNTYGLFGNRVIDYSPVGQAPRGSTIILDVSFF |
Ga0187780_103402301 | 3300017973 | Tropical Peatland | DMTVGEATRELEAAGFQVQVNTYGLVGNRVFDYSPVGEAPSGSTIVLDVGF |
Ga0187851_102343212 | 3300018046 | Peatland | QLLQQAGFQVQVNTYGPFDKVFNYGPTGQAPRGSTITIDVGYPHP |
Ga0173481_106448382 | 3300019356 | Soil | ATRLLENAGFQVRVTRFGFSNKVWDFSPVGEAPAGSTITLDVGPF |
Ga0187768_11133101 | 3300020150 | Tropical Peatland | AVSTGTAEVNIPNPIGMTVQQATQVLQAAGFQVQVNTYGLVGNTVFDFSPVGQAPRGSTITLDVGF |
Ga0210399_106203782 | 3300020581 | Soil | NAGFQVKVNRFGFFTNKVFDFSPVGEAPRGSTITLDVGPF |
Ga0210395_111580661 | 3300020582 | Soil | FQVKVNKFGFTNKVWDYSPVGEAPAGSTITLEVGPF |
Ga0213873_102387081 | 3300021358 | Rhizosphere | EQAIALLQQAGFQVQVNQYGPLDRVFDFSPAGQAPRGSTITLDVGF |
Ga0210387_111861161 | 3300021405 | Soil | QVLTQAGFQVKVNRFGFTDKVWDYSPVGEAPPGSTITLEVGPF |
Ga0210383_113824992 | 3300021407 | Soil | TVQDATTLLEGAGFQVKVNRFGFFNKVFDYSPTGQAPRGSTITLDVGF |
Ga0213851_12097661 | 3300021860 | Watersheds | GMSVQQATQVLQAAGFQVQVNTYGPFDKVFYFSPVNQAPRGSTIVLDVGY |
Ga0247693_10056401 | 3300024181 | Soil | NAGFQVKVNTFINFGRVFSYSPVGQAPPGSVITLEVGPF |
Ga0179591_11265791 | 3300024347 | Vadose Zone Soil | GMTVQDATQLLENAGFQVKVNTFGFTNKVWDYSPVGQAPAGSTITLDVGPF |
Ga0207653_103870132 | 3300025885 | Corn, Switchgrass And Miscanthus Rhizosphere | NAGFQVKVNTFINFGRVFAYSPVGQAPPGSVITLEVGPF |
Ga0207705_101531831 | 3300025909 | Corn Rhizosphere | GFQVKVNTFINFGRVFAYSPMGQAPPGSVITLEVGPF |
Ga0207664_105064882 | 3300025929 | Agricultural Soil | ENAGFQVNVHRFGFFNKVFDFSPVDQAPRGSTITLDVGF |
Ga0209648_102862532 | 3300026551 | Grasslands Soil | SVEQATRLLQGAGFQVQVNRYGPFNKVFDFSPVGPAPRGSTITLDVGF |
Ga0208842_1020642 | 3300026724 | Soil | TQVLRQAGFQVKVNRFGFTNKVWDYSPVGEAPPGSTITLEVGPF |
Ga0208094_1070122 | 3300027094 | Forest Soil | QATQVLRQAGFQVKVNKFGFTNKVWDYSPVGEAPAGSTITLEVGPF |
Ga0208729_1013281 | 3300027166 | Forest Soil | QAGFQVQVNTYGPFDKVFDYSPTGQAPKGSTITLDVGYPSP |
Ga0209178_13929452 | 3300027725 | Agricultural Soil | VQDATQLLQNAGFQVKVNSFMSFGKVFAYSPVGQAPPGSTITLDVGPF |
Ga0209177_100072561 | 3300027775 | Agricultural Soil | QLLENAGFQVKINRFGFSNKVWDYSPVGQAPPGSVITLEVGPF |
Ga0209074_101850542 | 3300027787 | Agricultural Soil | ENAGFQVNVHRFGFFNKVFDFSPVGQAPRGSTITLDVGF |
Ga0209811_102160931 | 3300027821 | Surface Soil | ARDATQLLENAGFQVKINRFGFSNKVWDYSPVGQAPPGSVITLDVGPF |
Ga0209583_102609632 | 3300027910 | Watersheds | QELQAAGFQVQVNTYGPFDTVFDFSPVNQAPRGSTIVLDVGY |
Ga0302234_104444371 | 3300028773 | Palsa | ATQLLQQAGFQVQVNKYGPLGKVFDFSPVGQAPRGSTIVLDVGF |
Ga0307284_100914402 | 3300028799 | Soil | IGMDATDATQLLENAGFQVKVNRFGLSNKVWDYSPVGQAPPGSVITLEVGPF |
Ga0302179_101332481 | 3300030058 | Palsa | QAGFQVQVNTYGPFDKVFDYSPTGQAPRGSTITLDVGYPSP |
Ga0302325_120891582 | 3300031234 | Palsa | QATQLLQQAGFQVKVNNYGPFGKVFDFSPVGQAPRGSTITLDVGF |
Ga0318534_104600741 | 3300031544 | Soil | LENAGFQVNVHRFGFFNSVFDFSPVGQAPRGSTITLDVGF |
Ga0318573_106329871 | 3300031564 | Soil | MTVDQATRLLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF |
Ga0318560_103660992 | 3300031682 | Soil | TVAQATQLLQAAGFQVKVNQYFPVDRVFAFSPSGQAPRGSTITLDVGF |
Ga0318521_104881512 | 3300031770 | Soil | VAQATQLLQAAGFQVKVNQYFPVDRVFAFSPSGQAPRGSTITLDVGF |
Ga0318546_101761032 | 3300031771 | Soil | QVLQAAGFQVEVNRYGFGGNGNNRVFDYAPVGQAPRGTTIVLDTF |
Ga0318547_105621891 | 3300031781 | Soil | SKEQATQVLQAAGFQVQVNTYGPFDKVFDYSPTTTAPRGSTVTLDVGF |
Ga0318550_103976752 | 3300031797 | Soil | LLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF |
Ga0318523_101315321 | 3300031798 | Soil | NAGFQVNVHRFGFFNSVFDFSPVGQAPRGSTITLDVGF |
Ga0307473_109113352 | 3300031820 | Hardwood Forest Soil | QVRVIRFGFSNKVWDFSPVGEAPAGSTITLDVGPF |
Ga0318499_102495711 | 3300031832 | Soil | AGFQVKVNRYGPFDRVFDFAPVGQAPRGSTITLDAGF |
Ga0318536_105534902 | 3300031893 | Soil | FQVTVNRFGFFNKVFDFSPVGEAPRGSTITLDVGF |
Ga0318551_107848351 | 3300031896 | Soil | PGWNVPSPIGMTVQAATKLLEDAGFQVTVNRFGFFNKVFDFSPVGEAPRGSTITLDVGF |
Ga0306923_111332332 | 3300031910 | Soil | TQLLQAAGFQVKVNQYFPVDRVFAFSPSGQAPRGSTITLDVGF |
Ga0308174_110845901 | 3300031939 | Soil | MSVQDATRLMENAGFQVNVHRFGFFNKVFDFSPVDQAPRGSTITLDVGF |
Ga0310916_105733042 | 3300031942 | Soil | AGFQVKVNQYFPVDRVFAFSPSGQAPRGSTITLDVGF |
Ga0310916_106300343 | 3300031942 | Soil | TRLLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF |
Ga0310910_111580051 | 3300031946 | Soil | GMSVDQATQVLQAAGFQVEVNRYGFGGNGNNRVFDYAPVGQAPRGTTIVLDTF |
Ga0310909_102490321 | 3300031947 | Soil | GFQVNVHRFGFFNRVFDFSPVGQAPRGSTITLDVGF |
Ga0318569_100438591 | 3300032010 | Soil | VEDATRLLENAGFQVNVHRFGFFNSVFDFSPVGQAPRGSTITLDVGF |
Ga0318558_102580371 | 3300032044 | Soil | ATRLLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF |
Ga0308173_112552661 | 3300032074 | Soil | SVQDARQLLQNAGFQVKVNSFMSFGKVFAYSPVGQAPPGSTITLDVGPF |
Ga0306924_121159431 | 3300032076 | Soil | GFQVTVNRFGFFNKVFAFSPVGEAPRGSTITLDVGF |
Ga0307471_1033675151 | 3300032180 | Hardwood Forest Soil | IGMTVQDATRLLENAGFQVKVTRFGFSNKVWDFSPVGEAPAGSTITLDVGPF |
Ga0335070_106222222 | 3300032829 | Soil | LEDAGFQVKVNRFAFSNRVFDYSPAGQAPRGSTITLDIGF |
Ga0335072_114405922 | 3300032898 | Soil | NVPDPIGMTVQNATKLLEDAGFQVKVNRFGFFNNKVFDFSPVGQAPSGSTITLDVGF |
Ga0335083_105492882 | 3300032954 | Soil | ENAGFQVKINRFGFSNKVWDYSPVGQAPPGSIITLEVGPF |
Ga0335083_111274441 | 3300032954 | Soil | GAGFQVQVNRFGFFNKVFDYSPTGQAPRGSTITLDVGF |
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