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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F105122 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 100 |
| Average Sequence Length | 45 residues |
| Representative Sequence | RLMENAGFQVKVNRFGFFNKVFDFSPVGQAPRGSTITLDVGF |
| Number of Associated Samples | 96 |
| Number of Associated Scaffolds | 100 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 93 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.31 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.000 % of family members) |
| Environment Ontology (ENVO) | Unclassified (23.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (48.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 24.29% Coil/Unstructured: 75.71% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.31 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 100 Family Scaffolds |
|---|---|---|
| PF00793 | DAHP_synth_1 | 42.00 |
| PF01261 | AP_endonuc_2 | 3.00 |
| PF02568 | ThiI | 2.00 |
| PF08241 | Methyltransf_11 | 1.00 |
| PF01381 | HTH_3 | 1.00 |
| PF00174 | Oxidored_molyb | 1.00 |
| COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
|---|---|---|---|
| COG0037 | tRNA(Ile)-lysidine synthase TilS/MesJ | Translation, ribosomal structure and biogenesis [J] | 2.00 |
| COG0301 | Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis) | Translation, ribosomal structure and biogenesis [J] | 2.00 |
| COG0482 | tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain | Translation, ribosomal structure and biogenesis [J] | 2.00 |
| COG0603 | 7-cyano-7-deazaguanine synthase (queuosine biosynthesis) | Translation, ribosomal structure and biogenesis [J] | 2.00 |
| COG2041 | Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases | Energy production and conversion [C] | 1.00 |
| COG3915 | Uncharacterized conserved protein | Function unknown [S] | 1.00 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 22.00% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 10.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 7.00% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 6.00% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 4.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 4.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 3.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 3.00% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 3.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 3.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 3.00% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 3.00% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 2.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.00% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.00% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 2.00% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 2.00% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 2.00% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 2.00% |
| Watersheds | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds | 1.00% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 1.00% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.00% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil | 1.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 1.00% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 1.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 1.00% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 1.00% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 1.00% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2124908045 | Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011 | Environmental | Open in IMG/M |
| 2209111022 | Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment | Environmental | Open in IMG/M |
| 3300000955 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300005185 | Soil and rhizosphere microbial communities from Laval, Canada - mgHPB | Environmental | Open in IMG/M |
| 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Environmental | Open in IMG/M |
| 3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Environmental | Open in IMG/M |
| 3300005454 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 | Environmental | Open in IMG/M |
| 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005526 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 | Environmental | Open in IMG/M |
| 3300005559 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 | Environmental | Open in IMG/M |
| 3300005568 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Host-Associated | Open in IMG/M |
| 3300005994 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 | Environmental | Open in IMG/M |
| 3300006577 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006604 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006755 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter | Environmental | Open in IMG/M |
| 3300006797 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108 | Environmental | Open in IMG/M |
| 3300006800 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 | Environmental | Open in IMG/M |
| 3300006806 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 | Environmental | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300007258 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 | Environmental | Open in IMG/M |
| 3300009638 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 | Environmental | Open in IMG/M |
| 3300009792 | Tropical forest soil microbial communities from Panama - MetaG Plot_12 | Environmental | Open in IMG/M |
| 3300010047 | Tropical forest soil microbial communities from Panama - MetaG Plot_30 | Environmental | Open in IMG/M |
| 3300010325 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG | Environmental | Open in IMG/M |
| 3300010335 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015 | Environmental | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
| 3300010877 | Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
| 3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
| 3300012208 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012357 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300012922 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG | Environmental | Open in IMG/M |
| 3300014150 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300015245 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
| 3300017946 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10 | Environmental | Open in IMG/M |
| 3300017959 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG | Environmental | Open in IMG/M |
| 3300017973 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG | Environmental | Open in IMG/M |
| 3300018046 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10 | Environmental | Open in IMG/M |
| 3300019356 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2) | Environmental | Open in IMG/M |
| 3300020150 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300021358 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 | Host-Associated | Open in IMG/M |
| 3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021860 | Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300024181 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34 | Environmental | Open in IMG/M |
| 3300024347 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300025885 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026551 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) | Environmental | Open in IMG/M |
| 3300026724 | Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN410 (SPAdes) | Environmental | Open in IMG/M |
| 3300027094 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF022 (SPAdes) | Environmental | Open in IMG/M |
| 3300027166 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF033 (SPAdes) | Environmental | Open in IMG/M |
| 3300027725 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes) | Environmental | Open in IMG/M |
| 3300027775 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes) | Environmental | Open in IMG/M |
| 3300027787 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes) | Environmental | Open in IMG/M |
| 3300027821 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027910 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes) | Environmental | Open in IMG/M |
| 3300028773 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2 | Environmental | Open in IMG/M |
| 3300028799 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123 | Environmental | Open in IMG/M |
| 3300030058 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1 | Environmental | Open in IMG/M |
| 3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
| 3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
| 3300031564 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21 | Environmental | Open in IMG/M |
| 3300031682 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22 | Environmental | Open in IMG/M |
| 3300031770 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
| 3300031797 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23 | Environmental | Open in IMG/M |
| 3300031798 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19 | Environmental | Open in IMG/M |
| 3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
| 3300031832 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25 | Environmental | Open in IMG/M |
| 3300031893 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28 | Environmental | Open in IMG/M |
| 3300031896 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19 | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031939 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2 | Environmental | Open in IMG/M |
| 3300031942 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300031947 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H | Environmental | Open in IMG/M |
| 3300032010 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22 | Environmental | Open in IMG/M |
| 3300032044 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20 | Environmental | Open in IMG/M |
| 3300032074 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032829 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| KansclcFeb2_10356790 | 2124908045 | Soil | TDATRLLENAGFQVKVNRFGFSNKVWDYSPVGQAPAGSVITLEVGPF |
| 2222059976 | 2209111022 | Grass Soil | VTPPKLLENAGFQVKVNRFGFTNKVWDYSPVGQAPRGSTITLDVGF |
| JGI1027J12803_1084480522 | 3300000955 | Soil | VPDPIGMDATDATQLLENAGFQVKVNRFGFSNKVWDYSPVGQAPPGSIITLEVGPF* |
| Ga0066811_10207361 | 3300005185 | Soil | QLLENAGFQVKVTRFGGFGNKVWNFSPEGQAPPGSVITLAVGPF* |
| Ga0070660_1000208661 | 3300005339 | Corn Rhizosphere | QLLQNAGFQVKVNSFINFGKVFAYSPMGQAPPGSVITLDVGPF* |
| Ga0070661_1001619613 | 3300005344 | Corn Rhizosphere | ARQLLQNAGFQVKVNTFINFGRVFAYSPMGQAPPGSVITLEVGPF* |
| Ga0070692_101838122 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | DPIGMDARDATQLLENAGFQVKVNRLGFGNKVWDFSPVGQAPPGSIITLEVGPF* |
| Ga0070705_1001987772 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | PIGMNVQDATQLLENSGFQVKVNSFGFTNKVWDYSPVGEAPAGSTITLEVGPF* |
| Ga0066687_104564292 | 3300005454 | Soil | VIGMNADDATRVLENAGFQVKVNRFGFSNKVWDYSPVGQAPPGSTITLDVGPF* |
| Ga0070662_1002897931 | 3300005457 | Corn Rhizosphere | QLLQNAGFQVKVNTFINFGRVFSYSPVGQAPPGSVITLEVGPF* |
| Ga0073909_106443603 | 3300005526 | Surface Soil | ARDATQLLENAGFQVKINRFGFSNKVWDYSPVGQAPPGSVITLDVGPF* |
| Ga0066700_111734143 | 3300005559 | Soil | FQVKVTRFGFSNKVWDFSPVGEAPAGSTITLDVGPF* |
| Ga0066703_103647671 | 3300005568 | Soil | AGFQVKVNKFGFTNRVWDYSPVGEAPAGSTITLEVGPF* |
| Ga0070762_106185633 | 3300005602 | Soil | QLQGAGFQVQVNRYGPFDRVFDFSPVSEAPRGSTIVLDVGY* |
| Ga0070762_107978901 | 3300005602 | Soil | VADATQLLQAAGFQVKVNRYFVGNKVFDFSPVGEAPRGSTITLDVGF* |
| Ga0068866_106088392 | 3300005718 | Miscanthus Rhizosphere | RQLLQNAGFQVKVNTFINFGRVFAYSPVGQAPPGSVITLEVGPF* |
| Ga0066789_104177912 | 3300005994 | Soil | FQVNVNKVGPGNRVFNYSPTGQAPPGSTITINVGFSFF* |
| Ga0074050_120526163 | 3300006577 | Soil | TDATRLLENAGFQVKVNRFGFSNKVWDYSPVGQAPPGSIITLDVGPF* |
| Ga0074060_119237131 | 3300006604 | Soil | PIGMDATDATRLLENAGFQVKINRFGFSNKVWDYSPVGQAPPGSVITLDVGPF* |
| Ga0079222_110062052 | 3300006755 | Agricultural Soil | ENAGFQVNVHRFGFFNKVFDFSPVGQAPRGSTITLDVGF* |
| Ga0066659_110013031 | 3300006797 | Soil | GMDVLQATQVLRQAGFQVKVNKFGFTNKVWDYSPVGQAPPGSTITLDVGPF* |
| Ga0066660_114462992 | 3300006800 | Soil | GMNVQDATQVLRQAGFQVKVNRFGFTDKVWVYSPVGEAPPGSTITLEVGPF* |
| Ga0079220_117370411 | 3300006806 | Agricultural Soil | VPDPIGMSVQDATRLMENAGFQVNVHRFGFFNKVFDFSPVDQAPRGSTITLDVGF* |
| Ga0079219_124098383 | 3300006954 | Agricultural Soil | QVNVHRFGFFNKVFDFSPVDQAPRGSTITLDVGF* |
| Ga0099793_104477681 | 3300007258 | Vadose Zone Soil | DYVARLEAAGFQVKVNSFGFTNKVWDYSPVGEAPPGSTITLEVGPF* |
| Ga0116113_11585163 | 3300009638 | Peatland | SVAQATQTLQQEGFHVQVNRYGPFNKVFDFSPVSQAPRGSTITLDVGF* |
| Ga0126374_109963881 | 3300009792 | Tropical Forest Soil | SPIGMTVEQATQVLQAAGFQVKVNRYFLGNKVFDFSPVGQAPRGSTITLDVGF* |
| Ga0126382_117363851 | 3300010047 | Tropical Forest Soil | KVHRFGFFNNKVFDYSPVGQAPQGSTITLDVGPF* |
| Ga0134064_102970192 | 3300010325 | Grasslands Soil | ATQVLRQAGFQVKVNRFGFTDKVWVYSPVGEAPPGSTITLEVGPF* |
| Ga0134063_101205672 | 3300010335 | Grasslands Soil | AGFQVKVNSFISFGKVFAYSPVGQAPPGSTISLDVGPF* |
| Ga0134128_115680152 | 3300010373 | Terrestrial Soil | RLMENAGFQVKVNRFGFFNKVFDFSPVGQAPRGSTITLDVGF* |
| Ga0134127_108264261 | 3300010399 | Terrestrial Soil | DARQLLQNAGFQVKVNTFINFGRVFAYSPMGQAPPGSVITLEVGPF* |
| Ga0126356_106035891 | 3300010877 | Boreal Forest Soil | DPIGMSVPDATRLLENAGFQVKVNRFGFFNKVFDYSPVGQAPRGSTITLDTGF* |
| Ga0137393_107393502 | 3300011271 | Vadose Zone Soil | VIGDTLERATQVLEAAGFAVKVSKFGPFDKVFDYSPATGQYPHGTTVTLDVGF* |
| Ga0137388_107797261 | 3300012189 | Vadose Zone Soil | SPIGMSVKDATQLLENAGFQVRVNRFGFFDKVFDFSPVGEAPRGSVITLDTGF* |
| Ga0137363_103610362 | 3300012202 | Vadose Zone Soil | QVKVNSFTFFGKVFDYAPVGEAPPGSTITLDVGF* |
| Ga0137376_107046111 | 3300012208 | Vadose Zone Soil | ATRLLESAGFQVKVNRFGFSNKVWDYSPVGQAPPGSTITLEVGPF* |
| Ga0137384_106790371 | 3300012357 | Vadose Zone Soil | TQVLQAAGFQVKVNRFGFFNKVFDFSPVGQAPRGSTITLDAGF* |
| Ga0137384_114042131 | 3300012357 | Vadose Zone Soil | NAGFQVKVNRFGFTNKVWDYSPVGQAPPGSTITLDVGPF* |
| Ga0137394_110935802 | 3300012922 | Vadose Zone Soil | PAVIGMNVLQATQVLRQAGFQVKVNKFGFTNKVWDYSPVGEAPAGSTITLEVGPF* |
| Ga0134081_101369592 | 3300014150 | Grasslands Soil | LLENAGFQVKVNRFGFSNKVWDYSPVGQAPPGSIITLEVGPF* |
| Ga0137409_105563512 | 3300015245 | Vadose Zone Soil | VKVNRFGFSNKVWDYSPVGQAPPGSIITLEVGPF* |
| Ga0182035_118948281 | 3300016341 | Soil | LQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF |
| Ga0187879_108223811 | 3300017946 | Peatland | ATQTLEQAGFRVQVNRYGPFNKVFDFSPVGQAPRGSTIILDVGF |
| Ga0187779_102580781 | 3300017959 | Tropical Peatland | QATQQLEAAGFQVQVNTYGLFGNRVIDYSPVGQAPRGSTIILDVSFF |
| Ga0187780_103402301 | 3300017973 | Tropical Peatland | DMTVGEATRELEAAGFQVQVNTYGLVGNRVFDYSPVGEAPSGSTIVLDVGF |
| Ga0187851_102343212 | 3300018046 | Peatland | QLLQQAGFQVQVNTYGPFDKVFNYGPTGQAPRGSTITIDVGYPHP |
| Ga0173481_106448382 | 3300019356 | Soil | ATRLLENAGFQVRVTRFGFSNKVWDFSPVGEAPAGSTITLDVGPF |
| Ga0187768_11133101 | 3300020150 | Tropical Peatland | AVSTGTAEVNIPNPIGMTVQQATQVLQAAGFQVQVNTYGLVGNTVFDFSPVGQAPRGSTITLDVGF |
| Ga0210399_106203782 | 3300020581 | Soil | NAGFQVKVNRFGFFTNKVFDFSPVGEAPRGSTITLDVGPF |
| Ga0210395_111580661 | 3300020582 | Soil | FQVKVNKFGFTNKVWDYSPVGEAPAGSTITLEVGPF |
| Ga0213873_102387081 | 3300021358 | Rhizosphere | EQAIALLQQAGFQVQVNQYGPLDRVFDFSPAGQAPRGSTITLDVGF |
| Ga0210387_111861161 | 3300021405 | Soil | QVLTQAGFQVKVNRFGFTDKVWDYSPVGEAPPGSTITLEVGPF |
| Ga0210383_113824992 | 3300021407 | Soil | TVQDATTLLEGAGFQVKVNRFGFFNKVFDYSPTGQAPRGSTITLDVGF |
| Ga0213851_12097661 | 3300021860 | Watersheds | GMSVQQATQVLQAAGFQVQVNTYGPFDKVFYFSPVNQAPRGSTIVLDVGY |
| Ga0247693_10056401 | 3300024181 | Soil | NAGFQVKVNTFINFGRVFSYSPVGQAPPGSVITLEVGPF |
| Ga0179591_11265791 | 3300024347 | Vadose Zone Soil | GMTVQDATQLLENAGFQVKVNTFGFTNKVWDYSPVGQAPAGSTITLDVGPF |
| Ga0207653_103870132 | 3300025885 | Corn, Switchgrass And Miscanthus Rhizosphere | NAGFQVKVNTFINFGRVFAYSPVGQAPPGSVITLEVGPF |
| Ga0207705_101531831 | 3300025909 | Corn Rhizosphere | GFQVKVNTFINFGRVFAYSPMGQAPPGSVITLEVGPF |
| Ga0207664_105064882 | 3300025929 | Agricultural Soil | ENAGFQVNVHRFGFFNKVFDFSPVDQAPRGSTITLDVGF |
| Ga0209648_102862532 | 3300026551 | Grasslands Soil | SVEQATRLLQGAGFQVQVNRYGPFNKVFDFSPVGPAPRGSTITLDVGF |
| Ga0208842_1020642 | 3300026724 | Soil | TQVLRQAGFQVKVNRFGFTNKVWDYSPVGEAPPGSTITLEVGPF |
| Ga0208094_1070122 | 3300027094 | Forest Soil | QATQVLRQAGFQVKVNKFGFTNKVWDYSPVGEAPAGSTITLEVGPF |
| Ga0208729_1013281 | 3300027166 | Forest Soil | QAGFQVQVNTYGPFDKVFDYSPTGQAPKGSTITLDVGYPSP |
| Ga0209178_13929452 | 3300027725 | Agricultural Soil | VQDATQLLQNAGFQVKVNSFMSFGKVFAYSPVGQAPPGSTITLDVGPF |
| Ga0209177_100072561 | 3300027775 | Agricultural Soil | QLLENAGFQVKINRFGFSNKVWDYSPVGQAPPGSVITLEVGPF |
| Ga0209074_101850542 | 3300027787 | Agricultural Soil | ENAGFQVNVHRFGFFNKVFDFSPVGQAPRGSTITLDVGF |
| Ga0209811_102160931 | 3300027821 | Surface Soil | ARDATQLLENAGFQVKINRFGFSNKVWDYSPVGQAPPGSVITLDVGPF |
| Ga0209583_102609632 | 3300027910 | Watersheds | QELQAAGFQVQVNTYGPFDTVFDFSPVNQAPRGSTIVLDVGY |
| Ga0302234_104444371 | 3300028773 | Palsa | ATQLLQQAGFQVQVNKYGPLGKVFDFSPVGQAPRGSTIVLDVGF |
| Ga0307284_100914402 | 3300028799 | Soil | IGMDATDATQLLENAGFQVKVNRFGLSNKVWDYSPVGQAPPGSVITLEVGPF |
| Ga0302179_101332481 | 3300030058 | Palsa | QAGFQVQVNTYGPFDKVFDYSPTGQAPRGSTITLDVGYPSP |
| Ga0302325_120891582 | 3300031234 | Palsa | QATQLLQQAGFQVKVNNYGPFGKVFDFSPVGQAPRGSTITLDVGF |
| Ga0318534_104600741 | 3300031544 | Soil | LENAGFQVNVHRFGFFNSVFDFSPVGQAPRGSTITLDVGF |
| Ga0318573_106329871 | 3300031564 | Soil | MTVDQATRLLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF |
| Ga0318560_103660992 | 3300031682 | Soil | TVAQATQLLQAAGFQVKVNQYFPVDRVFAFSPSGQAPRGSTITLDVGF |
| Ga0318521_104881512 | 3300031770 | Soil | VAQATQLLQAAGFQVKVNQYFPVDRVFAFSPSGQAPRGSTITLDVGF |
| Ga0318546_101761032 | 3300031771 | Soil | QVLQAAGFQVEVNRYGFGGNGNNRVFDYAPVGQAPRGTTIVLDTF |
| Ga0318547_105621891 | 3300031781 | Soil | SKEQATQVLQAAGFQVQVNTYGPFDKVFDYSPTTTAPRGSTVTLDVGF |
| Ga0318550_103976752 | 3300031797 | Soil | LLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF |
| Ga0318523_101315321 | 3300031798 | Soil | NAGFQVNVHRFGFFNSVFDFSPVGQAPRGSTITLDVGF |
| Ga0307473_109113352 | 3300031820 | Hardwood Forest Soil | QVRVIRFGFSNKVWDFSPVGEAPAGSTITLDVGPF |
| Ga0318499_102495711 | 3300031832 | Soil | AGFQVKVNRYGPFDRVFDFAPVGQAPRGSTITLDAGF |
| Ga0318536_105534902 | 3300031893 | Soil | FQVTVNRFGFFNKVFDFSPVGEAPRGSTITLDVGF |
| Ga0318551_107848351 | 3300031896 | Soil | PGWNVPSPIGMTVQAATKLLEDAGFQVTVNRFGFFNKVFDFSPVGEAPRGSTITLDVGF |
| Ga0306923_111332332 | 3300031910 | Soil | TQLLQAAGFQVKVNQYFPVDRVFAFSPSGQAPRGSTITLDVGF |
| Ga0308174_110845901 | 3300031939 | Soil | MSVQDATRLMENAGFQVNVHRFGFFNKVFDFSPVDQAPRGSTITLDVGF |
| Ga0310916_105733042 | 3300031942 | Soil | AGFQVKVNQYFPVDRVFAFSPSGQAPRGSTITLDVGF |
| Ga0310916_106300343 | 3300031942 | Soil | TRLLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF |
| Ga0310910_111580051 | 3300031946 | Soil | GMSVDQATQVLQAAGFQVEVNRYGFGGNGNNRVFDYAPVGQAPRGTTIVLDTF |
| Ga0310909_102490321 | 3300031947 | Soil | GFQVNVHRFGFFNRVFDFSPVGQAPRGSTITLDVGF |
| Ga0318569_100438591 | 3300032010 | Soil | VEDATRLLENAGFQVNVHRFGFFNSVFDFSPVGQAPRGSTITLDVGF |
| Ga0318558_102580371 | 3300032044 | Soil | ATRLLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF |
| Ga0308173_112552661 | 3300032074 | Soil | SVQDARQLLQNAGFQVKVNSFMSFGKVFAYSPVGQAPPGSTITLDVGPF |
| Ga0306924_121159431 | 3300032076 | Soil | GFQVTVNRFGFFNKVFAFSPVGEAPRGSTITLDVGF |
| Ga0307471_1033675151 | 3300032180 | Hardwood Forest Soil | IGMTVQDATRLLENAGFQVKVTRFGFSNKVWDFSPVGEAPAGSTITLDVGPF |
| Ga0335070_106222222 | 3300032829 | Soil | LEDAGFQVKVNRFAFSNRVFDYSPAGQAPRGSTITLDIGF |
| Ga0335072_114405922 | 3300032898 | Soil | NVPDPIGMTVQNATKLLEDAGFQVKVNRFGFFNNKVFDFSPVGQAPSGSTITLDVGF |
| Ga0335083_105492882 | 3300032954 | Soil | ENAGFQVKINRFGFSNKVWDYSPVGQAPPGSIITLEVGPF |
| Ga0335083_111274441 | 3300032954 | Soil | GAGFQVQVNRFGFFNKVFDYSPTGQAPRGSTITLDVGF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |