NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105122

Metagenome / Metatranscriptome Family F105122

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105122
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 45 residues
Representative Sequence RLMENAGFQVKVNRFGFFNKVFDFSPVGQAPRGSTITLDVGF
Number of Associated Samples 96
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(22.000 % of family members)
Environment Ontology (ENVO) Unclassified
(23.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(48.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74
1KansclcFeb2_10356790
22222059976
3JGI1027J12803_1084480522
4Ga0066811_10207361
5Ga0070660_1000208661
6Ga0070661_1001619613
7Ga0070692_101838122
8Ga0070705_1001987772
9Ga0066687_104564292
10Ga0070662_1002897931
11Ga0073909_106443603
12Ga0066700_111734143
13Ga0066703_103647671
14Ga0070762_106185633
15Ga0070762_107978901
16Ga0068866_106088392
17Ga0066789_104177912
18Ga0074050_120526163
19Ga0074060_119237131
20Ga0079222_110062052
21Ga0066659_110013031
22Ga0066660_114462992
23Ga0079220_117370411
24Ga0079219_124098383
25Ga0099793_104477681
26Ga0116113_11585163
27Ga0126374_109963881
28Ga0126382_117363851
29Ga0134064_102970192
30Ga0134063_101205672
31Ga0134128_115680152
32Ga0134127_108264261
33Ga0126356_106035891
34Ga0137393_107393502
35Ga0137388_107797261
36Ga0137363_103610362
37Ga0137376_107046111
38Ga0137384_106790371
39Ga0137384_114042131
40Ga0137394_110935802
41Ga0134081_101369592
42Ga0137409_105563512
43Ga0182035_118948281
44Ga0187879_108223811
45Ga0187779_102580781
46Ga0187780_103402301
47Ga0187851_102343212
48Ga0173481_106448382
49Ga0187768_11133101
50Ga0210399_106203782
51Ga0210395_111580661
52Ga0213873_102387081
53Ga0210387_111861161
54Ga0210383_113824992
55Ga0213851_12097661
56Ga0247693_10056401
57Ga0179591_11265791
58Ga0207653_103870132
59Ga0207705_101531831
60Ga0207664_105064882
61Ga0209648_102862532
62Ga0208842_1020642
63Ga0208094_1070122
64Ga0208729_1013281
65Ga0209178_13929452
66Ga0209177_100072561
67Ga0209074_101850542
68Ga0209811_102160931
69Ga0209583_102609632
70Ga0302234_104444371
71Ga0307284_100914402
72Ga0302179_101332481
73Ga0302325_120891582
74Ga0318534_104600741
75Ga0318573_106329871
76Ga0318560_103660992
77Ga0318521_104881512
78Ga0318546_101761032
79Ga0318547_105621891
80Ga0318550_103976752
81Ga0318523_101315321
82Ga0307473_109113352
83Ga0318499_102495711
84Ga0318536_105534902
85Ga0318551_107848351
86Ga0306923_111332332
87Ga0308174_110845901
88Ga0310916_105733042
89Ga0310916_106300343
90Ga0310910_111580051
91Ga0310909_102490321
92Ga0318569_100438591
93Ga0318558_102580371
94Ga0308173_112552661
95Ga0306924_121159431
96Ga0307471_1033675151
97Ga0335070_106222222
98Ga0335072_114405922
99Ga0335083_105492882
100Ga0335083_111274441
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 24.29%    Coil/Unstructured: 75.71%
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Variant

510152025303540RLMENAGFQVKVNRFGFFNKVFDFSPVGQAPRGSTITLDVGFSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Watersheds
Peatland
Peatland
Watersheds
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Grass Soil
Surface Soil
Agricultural Soil
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Peatland
Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Palsa
Miscanthus Rhizosphere
Rhizosphere
Corn Rhizosphere
Boreal Forest Soil
3.0%10.0%3.0%6.0%7.0%22.0%3.0%4.0%3.0%3.0%3.0%3.0%4.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
KansclcFeb2_103567902124908045SoilTDATRLLENAGFQVKVNRFGFSNKVWDYSPVGQAPAGSVITLEVGPF
22220599762209111022Grass SoilVTPPKLLENAGFQVKVNRFGFTNKVWDYSPVGQAPRGSTITLDVGF
JGI1027J12803_10844805223300000955SoilVPDPIGMDATDATQLLENAGFQVKVNRFGFSNKVWDYSPVGQAPPGSIITLEVGPF*
Ga0066811_102073613300005185SoilQLLENAGFQVKVTRFGGFGNKVWNFSPEGQAPPGSVITLAVGPF*
Ga0070660_10002086613300005339Corn RhizosphereQLLQNAGFQVKVNSFINFGKVFAYSPMGQAPPGSVITLDVGPF*
Ga0070661_10016196133300005344Corn RhizosphereARQLLQNAGFQVKVNTFINFGRVFAYSPMGQAPPGSVITLEVGPF*
Ga0070692_1018381223300005345Corn, Switchgrass And Miscanthus RhizosphereDPIGMDARDATQLLENAGFQVKVNRLGFGNKVWDFSPVGQAPPGSIITLEVGPF*
Ga0070705_10019877723300005440Corn, Switchgrass And Miscanthus RhizospherePIGMNVQDATQLLENSGFQVKVNSFGFTNKVWDYSPVGEAPAGSTITLEVGPF*
Ga0066687_1045642923300005454SoilVIGMNADDATRVLENAGFQVKVNRFGFSNKVWDYSPVGQAPPGSTITLDVGPF*
Ga0070662_10028979313300005457Corn RhizosphereQLLQNAGFQVKVNTFINFGRVFSYSPVGQAPPGSVITLEVGPF*
Ga0073909_1064436033300005526Surface SoilARDATQLLENAGFQVKINRFGFSNKVWDYSPVGQAPPGSVITLDVGPF*
Ga0066700_1117341433300005559SoilFQVKVTRFGFSNKVWDFSPVGEAPAGSTITLDVGPF*
Ga0066703_1036476713300005568SoilAGFQVKVNKFGFTNRVWDYSPVGEAPAGSTITLEVGPF*
Ga0070762_1061856333300005602SoilQLQGAGFQVQVNRYGPFDRVFDFSPVSEAPRGSTIVLDVGY*
Ga0070762_1079789013300005602SoilVADATQLLQAAGFQVKVNRYFVGNKVFDFSPVGEAPRGSTITLDVGF*
Ga0068866_1060883923300005718Miscanthus RhizosphereRQLLQNAGFQVKVNTFINFGRVFAYSPVGQAPPGSVITLEVGPF*
Ga0066789_1041779123300005994SoilFQVNVNKVGPGNRVFNYSPTGQAPPGSTITINVGFSFF*
Ga0074050_1205261633300006577SoilTDATRLLENAGFQVKVNRFGFSNKVWDYSPVGQAPPGSIITLDVGPF*
Ga0074060_1192371313300006604SoilPIGMDATDATRLLENAGFQVKINRFGFSNKVWDYSPVGQAPPGSVITLDVGPF*
Ga0079222_1100620523300006755Agricultural SoilENAGFQVNVHRFGFFNKVFDFSPVGQAPRGSTITLDVGF*
Ga0066659_1100130313300006797SoilGMDVLQATQVLRQAGFQVKVNKFGFTNKVWDYSPVGQAPPGSTITLDVGPF*
Ga0066660_1144629923300006800SoilGMNVQDATQVLRQAGFQVKVNRFGFTDKVWVYSPVGEAPPGSTITLEVGPF*
Ga0079220_1173704113300006806Agricultural SoilVPDPIGMSVQDATRLMENAGFQVNVHRFGFFNKVFDFSPVDQAPRGSTITLDVGF*
Ga0079219_1240983833300006954Agricultural SoilQVNVHRFGFFNKVFDFSPVDQAPRGSTITLDVGF*
Ga0099793_1044776813300007258Vadose Zone SoilDYVARLEAAGFQVKVNSFGFTNKVWDYSPVGEAPPGSTITLEVGPF*
Ga0116113_115851633300009638PeatlandSVAQATQTLQQEGFHVQVNRYGPFNKVFDFSPVSQAPRGSTITLDVGF*
Ga0126374_1099638813300009792Tropical Forest SoilSPIGMTVEQATQVLQAAGFQVKVNRYFLGNKVFDFSPVGQAPRGSTITLDVGF*
Ga0126382_1173638513300010047Tropical Forest SoilKVHRFGFFNNKVFDYSPVGQAPQGSTITLDVGPF*
Ga0134064_1029701923300010325Grasslands SoilATQVLRQAGFQVKVNRFGFTDKVWVYSPVGEAPPGSTITLEVGPF*
Ga0134063_1012056723300010335Grasslands SoilAGFQVKVNSFISFGKVFAYSPVGQAPPGSTISLDVGPF*
Ga0134128_1156801523300010373Terrestrial SoilRLMENAGFQVKVNRFGFFNKVFDFSPVGQAPRGSTITLDVGF*
Ga0134127_1082642613300010399Terrestrial SoilDARQLLQNAGFQVKVNTFINFGRVFAYSPMGQAPPGSVITLEVGPF*
Ga0126356_1060358913300010877Boreal Forest SoilDPIGMSVPDATRLLENAGFQVKVNRFGFFNKVFDYSPVGQAPRGSTITLDTGF*
Ga0137393_1073935023300011271Vadose Zone SoilVIGDTLERATQVLEAAGFAVKVSKFGPFDKVFDYSPATGQYPHGTTVTLDVGF*
Ga0137388_1077972613300012189Vadose Zone SoilSPIGMSVKDATQLLENAGFQVRVNRFGFFDKVFDFSPVGEAPRGSVITLDTGF*
Ga0137363_1036103623300012202Vadose Zone SoilQVKVNSFTFFGKVFDYAPVGEAPPGSTITLDVGF*
Ga0137376_1070461113300012208Vadose Zone SoilATRLLESAGFQVKVNRFGFSNKVWDYSPVGQAPPGSTITLEVGPF*
Ga0137384_1067903713300012357Vadose Zone SoilTQVLQAAGFQVKVNRFGFFNKVFDFSPVGQAPRGSTITLDAGF*
Ga0137384_1140421313300012357Vadose Zone SoilNAGFQVKVNRFGFTNKVWDYSPVGQAPPGSTITLDVGPF*
Ga0137394_1109358023300012922Vadose Zone SoilPAVIGMNVLQATQVLRQAGFQVKVNKFGFTNKVWDYSPVGEAPAGSTITLEVGPF*
Ga0134081_1013695923300014150Grasslands SoilLLENAGFQVKVNRFGFSNKVWDYSPVGQAPPGSIITLEVGPF*
Ga0137409_1055635123300015245Vadose Zone SoilVKVNRFGFSNKVWDYSPVGQAPPGSIITLEVGPF*
Ga0182035_1189482813300016341SoilLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF
Ga0187879_1082238113300017946PeatlandATQTLEQAGFRVQVNRYGPFNKVFDFSPVGQAPRGSTIILDVGF
Ga0187779_1025807813300017959Tropical PeatlandQATQQLEAAGFQVQVNTYGLFGNRVIDYSPVGQAPRGSTIILDVSFF
Ga0187780_1034023013300017973Tropical PeatlandDMTVGEATRELEAAGFQVQVNTYGLVGNRVFDYSPVGEAPSGSTIVLDVGF
Ga0187851_1023432123300018046PeatlandQLLQQAGFQVQVNTYGPFDKVFNYGPTGQAPRGSTITIDVGYPHP
Ga0173481_1064483823300019356SoilATRLLENAGFQVRVTRFGFSNKVWDFSPVGEAPAGSTITLDVGPF
Ga0187768_111331013300020150Tropical PeatlandAVSTGTAEVNIPNPIGMTVQQATQVLQAAGFQVQVNTYGLVGNTVFDFSPVGQAPRGSTITLDVGF
Ga0210399_1062037823300020581SoilNAGFQVKVNRFGFFTNKVFDFSPVGEAPRGSTITLDVGPF
Ga0210395_1115806613300020582SoilFQVKVNKFGFTNKVWDYSPVGEAPAGSTITLEVGPF
Ga0213873_1023870813300021358RhizosphereEQAIALLQQAGFQVQVNQYGPLDRVFDFSPAGQAPRGSTITLDVGF
Ga0210387_1118611613300021405SoilQVLTQAGFQVKVNRFGFTDKVWDYSPVGEAPPGSTITLEVGPF
Ga0210383_1138249923300021407SoilTVQDATTLLEGAGFQVKVNRFGFFNKVFDYSPTGQAPRGSTITLDVGF
Ga0213851_120976613300021860WatershedsGMSVQQATQVLQAAGFQVQVNTYGPFDKVFYFSPVNQAPRGSTIVLDVGY
Ga0247693_100564013300024181SoilNAGFQVKVNTFINFGRVFSYSPVGQAPPGSVITLEVGPF
Ga0179591_112657913300024347Vadose Zone SoilGMTVQDATQLLENAGFQVKVNTFGFTNKVWDYSPVGQAPAGSTITLDVGPF
Ga0207653_1038701323300025885Corn, Switchgrass And Miscanthus RhizosphereNAGFQVKVNTFINFGRVFAYSPVGQAPPGSVITLEVGPF
Ga0207705_1015318313300025909Corn RhizosphereGFQVKVNTFINFGRVFAYSPMGQAPPGSVITLEVGPF
Ga0207664_1050648823300025929Agricultural SoilENAGFQVNVHRFGFFNKVFDFSPVDQAPRGSTITLDVGF
Ga0209648_1028625323300026551Grasslands SoilSVEQATRLLQGAGFQVQVNRYGPFNKVFDFSPVGPAPRGSTITLDVGF
Ga0208842_10206423300026724SoilTQVLRQAGFQVKVNRFGFTNKVWDYSPVGEAPPGSTITLEVGPF
Ga0208094_10701223300027094Forest SoilQATQVLRQAGFQVKVNKFGFTNKVWDYSPVGEAPAGSTITLEVGPF
Ga0208729_10132813300027166Forest SoilQAGFQVQVNTYGPFDKVFDYSPTGQAPKGSTITLDVGYPSP
Ga0209178_139294523300027725Agricultural SoilVQDATQLLQNAGFQVKVNSFMSFGKVFAYSPVGQAPPGSTITLDVGPF
Ga0209177_1000725613300027775Agricultural SoilQLLENAGFQVKINRFGFSNKVWDYSPVGQAPPGSVITLEVGPF
Ga0209074_1018505423300027787Agricultural SoilENAGFQVNVHRFGFFNKVFDFSPVGQAPRGSTITLDVGF
Ga0209811_1021609313300027821Surface SoilARDATQLLENAGFQVKINRFGFSNKVWDYSPVGQAPPGSVITLDVGPF
Ga0209583_1026096323300027910WatershedsQELQAAGFQVQVNTYGPFDTVFDFSPVNQAPRGSTIVLDVGY
Ga0302234_1044443713300028773PalsaATQLLQQAGFQVQVNKYGPLGKVFDFSPVGQAPRGSTIVLDVGF
Ga0307284_1009144023300028799SoilIGMDATDATQLLENAGFQVKVNRFGLSNKVWDYSPVGQAPPGSVITLEVGPF
Ga0302179_1013324813300030058PalsaQAGFQVQVNTYGPFDKVFDYSPTGQAPRGSTITLDVGYPSP
Ga0302325_1208915823300031234PalsaQATQLLQQAGFQVKVNNYGPFGKVFDFSPVGQAPRGSTITLDVGF
Ga0318534_1046007413300031544SoilLENAGFQVNVHRFGFFNSVFDFSPVGQAPRGSTITLDVGF
Ga0318573_1063298713300031564SoilMTVDQATRLLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF
Ga0318560_1036609923300031682SoilTVAQATQLLQAAGFQVKVNQYFPVDRVFAFSPSGQAPRGSTITLDVGF
Ga0318521_1048815123300031770SoilVAQATQLLQAAGFQVKVNQYFPVDRVFAFSPSGQAPRGSTITLDVGF
Ga0318546_1017610323300031771SoilQVLQAAGFQVEVNRYGFGGNGNNRVFDYAPVGQAPRGTTIVLDTF
Ga0318547_1056218913300031781SoilSKEQATQVLQAAGFQVQVNTYGPFDKVFDYSPTTTAPRGSTVTLDVGF
Ga0318550_1039767523300031797SoilLLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF
Ga0318523_1013153213300031798SoilNAGFQVNVHRFGFFNSVFDFSPVGQAPRGSTITLDVGF
Ga0307473_1091133523300031820Hardwood Forest SoilQVRVIRFGFSNKVWDFSPVGEAPAGSTITLDVGPF
Ga0318499_1024957113300031832SoilAGFQVKVNRYGPFDRVFDFAPVGQAPRGSTITLDAGF
Ga0318536_1055349023300031893SoilFQVTVNRFGFFNKVFDFSPVGEAPRGSTITLDVGF
Ga0318551_1078483513300031896SoilPGWNVPSPIGMTVQAATKLLEDAGFQVTVNRFGFFNKVFDFSPVGEAPRGSTITLDVGF
Ga0306923_1113323323300031910SoilTQLLQAAGFQVKVNQYFPVDRVFAFSPSGQAPRGSTITLDVGF
Ga0308174_1108459013300031939SoilMSVQDATRLMENAGFQVNVHRFGFFNKVFDFSPVDQAPRGSTITLDVGF
Ga0310916_1057330423300031942SoilAGFQVKVNQYFPVDRVFAFSPSGQAPRGSTITLDVGF
Ga0310916_1063003433300031942SoilTRLLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF
Ga0310910_1115800513300031946SoilGMSVDQATQVLQAAGFQVEVNRYGFGGNGNNRVFDYAPVGQAPRGTTIVLDTF
Ga0310909_1024903213300031947SoilGFQVNVHRFGFFNRVFDFSPVGQAPRGSTITLDVGF
Ga0318569_1004385913300032010SoilVEDATRLLENAGFQVNVHRFGFFNSVFDFSPVGQAPRGSTITLDVGF
Ga0318558_1025803713300032044SoilATRLLQDAGFQVTVNKFGFSNRVWAYSPTGEAPRGSTITLEVGLF
Ga0308173_1125526613300032074SoilSVQDARQLLQNAGFQVKVNSFMSFGKVFAYSPVGQAPPGSTITLDVGPF
Ga0306924_1211594313300032076SoilGFQVTVNRFGFFNKVFAFSPVGEAPRGSTITLDVGF
Ga0307471_10336751513300032180Hardwood Forest SoilIGMTVQDATRLLENAGFQVKVTRFGFSNKVWDFSPVGEAPAGSTITLDVGPF
Ga0335070_1062222223300032829SoilLEDAGFQVKVNRFAFSNRVFDYSPAGQAPRGSTITLDIGF
Ga0335072_1144059223300032898SoilNVPDPIGMTVQNATKLLEDAGFQVKVNRFGFFNNKVFDFSPVGQAPSGSTITLDVGF
Ga0335083_1054928823300032954SoilENAGFQVKINRFGFSNKVWDYSPVGQAPPGSIITLEVGPF
Ga0335083_1112744413300032954SoilGAGFQVQVNRFGFFNKVFDYSPTGQAPRGSTITLDVGF


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