Basic Information | |
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Family ID | F097737 |
Family Type | Metagenome |
Number of Sequences | 104 |
Average Sequence Length | 52 residues |
Representative Sequence | VSSANRKPGIHVAWTTVTYRSVALLILAGAAVFFIAMRVAFPQFTQNGVQ |
Number of Associated Samples | 98 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 0.96 % |
% of genes from short scaffolds (< 2000 bps) | 0.96 % |
Associated GOLD sequencing projects | 94 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.54 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.500 % of family members) |
Environment Ontology (ENVO) | Unclassified (29.808 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (68.269 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 39.74% β-sheet: 2.56% Coil/Unstructured: 57.69% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.54 |
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Visualization |
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Bog Forest Soil Bog Peatland Freshwater Sediment Iron-Sulfur Acid Spring Watersheds Soil Vadose Zone Soil Tropical Forest Soil Grass Soil Surface Soil Peatlands Soil Soil Soil Soil Hardwood Forest Soil Soil Tropical Peatland Thawing Permafrost Bog Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Palsa Bog Plant Litter Miscanthus Rhizosphere Switchgrass Rhizosphere Roots Rhizosphere Miscanthus Rhizosphere Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
FD2_00576970 | 2189573001 | Grass Soil | VSSDNRKPGIHVAWTTVTYRSLAVLIIGVAAAFFLSMRLAFPQFTDTSVKKASDVAGK |
JGI12270J11330_102068181 | 3300000567 | Peatlands Soil | VRFFGSKVSADNRKPGIHIAWTTVTYRSVALMIVAGAAIFFFAVRMTFPQFTESGIKKVDDVA |
C688J13580_10357291 | 3300001205 | Soil | VSSDNRKPGIHVAWTTVTYRSLALLIIAVGAGFFVSMRLVFPQFTQSSVKKAGDVTSKLL |
JGI12712J15308_100137382 | 3300001471 | Forest Soil | VGLTGSFVKVSSPIRKPGIHVRWKQVTYRSVALLVLAGAAIFLVAMHLVFPQFTD |
JGI12635J15846_101669942 | 3300001593 | Forest Soil | VSSPNRKPGIHVAWTTVTYRSVALMVLAGGVVLLLGMRFTFPQFTEN |
C688J18823_106239941 | 3300001686 | Soil | VSSNNRKPGIHVAWTTITYRSVALLILATAAIAFIALRFTFPQFTQNTLQKAGDVT |
Ga0062385_104288211 | 3300004080 | Bog Forest Soil | VSSVNRKPGIHVAWTTITYRSVALIVVGVAALFFVAARVAFPQFTESGIK |
Ga0062387_1008979772 | 3300004091 | Bog Forest Soil | VASDNRKPGIHVAWTTVTYRSVILLILAALAIVFGAMRVAFPQFTQN |
Ga0063455_1000668671 | 3300004153 | Soil | VSSDNRKPGIHVAWTTVTYRSLALLIIAVGAGFFVSMRLVFPQFTQSSVKKAGDVTSKL |
Ga0066678_103656282 | 3300005181 | Soil | VSSDNRKPGIHIKWKTVTYRSVALLILAGALILFVGMRIAFPQFTQASIQAADNVANKI |
Ga0070711_1005030041 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | VSSANRKPGIHVAWTTVTYRSVILLILAVAAVFFIAMRVAFPQFTQNSLKAADNV |
Ga0070761_102609072 | 3300005591 | Soil | VSSDNRKSGIHVAWTTITYRSVVLLCLAVVAILFIAVRVAFPQFTQNSVQAGE |
Ga0070762_102848301 | 3300005602 | Soil | VSSSTRKPGIHIAWKTVTYRSVALLIVAGAAIFFVAVRFTFPQFTESGIKA |
Ga0070763_102584072 | 3300005610 | Soil | VSSDNRKSGIHVAWTTITYRSVVLLVLAVIAILFVAMRFAFPQFTQNSVKA |
Ga0070717_104102111 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | VSSNSRKTGVHIAWTTITYRSVALLVLAVCAIFFVAMRLAFPQFT |
Ga0075017_1009025842 | 3300006059 | Watersheds | VSTDSRKPGIHIAWTAVSYRSVALMIMGVAALFFAAMWFTFPQFTQTGLKKSEDLAGKLLEKVAGIA |
Ga0075019_108724601 | 3300006086 | Watersheds | VLVSSTTSKPGLHIAWKTVTYRSVALLILAVVVVLLVAVRVSFPQFSEHAIQAADK |
Ga0070765_1001394432 | 3300006176 | Soil | VSSDDRKPGLHVAWTTVSYRSVALLIIAGAGIFFGAMWFTFPQFTQSSLKKADDVFSK |
Ga0097621_1008454042 | 3300006237 | Miscanthus Rhizosphere | VSSDNRKSGIHVAWTTITYRSVALLILAGLAIFGVAVRFTFPQ |
Ga0073928_103736961 | 3300006893 | Iron-Sulfur Acid Spring | VSSPNRKSGIHVAWTTVTYRSVVLMVLAALAVFFMVLHAVFPQFT |
Ga0116105_12517251 | 3300009624 | Peatland | VSSSTRKPGIHIAWKTVTYRSVALLIVGGAVVLFIGVRLTFPQFT |
Ga0116129_10617712 | 3300009633 | Peatland | VHVSSQTRKPGVHIAWKTVTYRSVALMILSGVVICLLGMRLAFPQFTE |
Ga0116215_13061441 | 3300009672 | Peatlands Soil | VSADNRKPGIHIAWTTVTYRSVALMIVAGAAIFFFAVRMTFPQFTESGIKKVDDVAGRLLEKV |
Ga0116217_107203762 | 3300009700 | Peatlands Soil | VSSSTRKPGIHIAWTTVTYRSVALMILAGALLFLLAMKVAFPQ |
Ga0116219_100808361 | 3300009824 | Peatlands Soil | VSSDNRKPGIHVAWTTITYRSVALLVIAVAVVFFIAMRVAFPQFTENSVKA |
Ga0116223_109084441 | 3300009839 | Peatlands Soil | VSSPTRKPGIHIAWKTVTYRSVALLIIGGFAVVLIGIRLTFP |
Ga0126373_103214203 | 3300010048 | Tropical Forest Soil | VSSDDRKPGIHIAWTTVTYRSVALLIFAVAAAFFIAMHFAFPQ |
Ga0126378_103730811 | 3300010361 | Tropical Forest Soil | VSSDDRKPGIHIAWTTVTYRSVALLIFAVAAAFFIAMHFAFPQFTDNS |
Ga0126379_134738622 | 3300010366 | Tropical Forest Soil | VSSDNRKPGIHVAWTTVTYRSLVLLTLAVVAALFIALRFTFPQFTENTVK |
Ga0137386_106867791 | 3300012351 | Vadose Zone Soil | VSSDNRKSGIHVAWTTITYRSVALLILAGVAIFGVVVRFTFPQFTDNSIKAGEN |
Ga0137404_111675032 | 3300012929 | Vadose Zone Soil | VSSDNRKPGIHVAWTTVTYRSVALLILAVAAVLFIGMRVAFPQFTQNGVHAVNNVAGKLLEKVA |
Ga0126369_119771661 | 3300012971 | Tropical Forest Soil | VSSDDRKPGIHIAWTTVTYRSVALLIFAVAAAFFIAMHFAFPQFTDNSI |
Ga0157378_130625931 | 3300013297 | Miscanthus Rhizosphere | VSSDNRKPGIHVAWTTITYRSVALLILAGLAIFGVAVRFTFP |
Ga0181531_102988502 | 3300014169 | Bog | VSSDNRKSGIHVAWTTITYRSVVLLVLAVIAILFIAMRMAFPQFTQNSVK |
Ga0163163_105855751 | 3300014325 | Switchgrass Rhizosphere | VSPNRKPGIHVEWTSVTYRSVLLAVVGVAALFSLGMRLAFPQFTETTVKAAS |
Ga0182016_106585301 | 3300014493 | Bog | VSSSTRKPGIHIAWKTVTYRSVALLIVGGAAVLFIGVRLTFPQFTESSIKAASG |
Ga0182032_119543222 | 3300016357 | Soil | VASNNRKPGIHVAWTTITYRSVALLILAVAAIAFISIRFAFPQFTQN |
Ga0182039_105413771 | 3300016422 | Soil | MHIAWTTITYRSVALIILAVGAIFFVAMRIAFPQFTQASLQKAGDVTSKVLEKVA |
Ga0187817_111381051 | 3300017955 | Freshwater Sediment | VSSNDRKPGIHVAWTTVTYRSVALLILAVLAVFFFAMHAAFPQFTDNSLKSAGSVANKLL |
Ga0187778_105486371 | 3300017961 | Tropical Peatland | VSSPNRKPGFHIAWTTVTYRSVALLILAGVAIFYIFMRATFPQFTENSLKKADDAAGRLLEHVAG |
Ga0187780_104724412 | 3300017973 | Tropical Peatland | VAPENRKPGFHIAWTTITYRSVVLLILAVAGGFFLFMRATFPQFTQNTLQKADDVASK |
Ga0187780_109933271 | 3300017973 | Tropical Peatland | VSSDNRKPGIHIAWTTVTYRSVALLILAVVAVFFIAMRAAFPQFTQNTLQKAGDVTSKVLEK |
Ga0187782_110204092 | 3300017975 | Tropical Peatland | VSSANRKPGIHIAWTTVTYRSVALLILAGFAVCFIAMRMAFPQFTENGLKKANDVAGKLLEKV |
Ga0187805_106490471 | 3300018007 | Freshwater Sediment | VSSDNRKPGIHVAWTTVTYRSVALLIVGVAVVFFAAVRVTFPQFTQSSMKKANDVA |
Ga0187769_112867252 | 3300018086 | Tropical Peatland | VSSANRKPGIHIAWTTVTYRSVVLLALTVVGFLFLAVRVTFPQFTAN |
Ga0187770_117961882 | 3300018090 | Tropical Peatland | VSANRKPGIHIAWKTVTYRSVLLTVLAGVLLFSIGIRLTFPQFTENSIKAAD |
Ga0210407_100304231 | 3300020579 | Soil | VSSSTRKPGIHIAWTTVTYRSVALMILAGLIVFLVGMRFTFPQFTENSI |
Ga0210403_111755841 | 3300020580 | Soil | VALVSPNRKPGIHIAWKTVTYRSVMLLVLLGLVVFFLGVRLTFPQFTDNGLKAVNGL |
Ga0210399_110384721 | 3300020581 | Soil | VSSANRKPGIHVAWTTVTYRSVALLIMAVAAVFFIAMRVAFPQFTQNGVQAVNNV |
Ga0210408_108604411 | 3300021178 | Soil | VSSDNRKPGLHVAWTTVTYRSVALMILGVAVVFSIGMRVAFPQFTESSVKSASNVASK |
Ga0210385_113154872 | 3300021402 | Soil | VSSANRKPGIHVAWTTVTYRSVALLILAGAAILFAAMRVAFPQFTQSGVKAANNIA |
Ga0210389_113537802 | 3300021404 | Soil | VSSDNRKPGIHVAWKTVTYRSVALAILAIAALIFLGLRVAFPQFTQSTVKAAGDVAGKLL |
Ga0210383_100694271 | 3300021407 | Soil | VSSQTRKPGIHIAWKTVTYRSVALLILAGAAVCFVAMRLTFPQFTENSVKAVGSVANK |
Ga0210394_101886481 | 3300021420 | Soil | VSSPTRKPGIHVAWTTVTYRSVALMVLAGAVVLLLGMRFTFP |
Ga0210394_107174982 | 3300021420 | Soil | VPSDNRKSGIHVAWTTITYRSVALLIMAGAVIFYFVVRFTFPQF |
Ga0210384_111732971 | 3300021432 | Soil | VSSANRKPGIHVAWTTVTYRSVALLILAGAAVFFIAMRVAFPQFTQNGVQ |
Ga0210392_111040101 | 3300021475 | Soil | VSSPTRKPGIHIAWKTVTYRSVALLIVAGAAVVLIGIRL |
Ga0210410_107489001 | 3300021479 | Soil | VSSSTRKPGIHVAWKTVTYRSVALLILAGAVVFFVAVRFTFPQFTDSGIKAASGFASRAL |
Ga0210409_115174421 | 3300021559 | Soil | VSSPIRKPGIHIAWTTVTYRSVALLIVAGAAVFFIAVRFTFPQFTEN |
Ga0126371_129374961 | 3300021560 | Tropical Forest Soil | VASNNRKPGIHIAWTTITYRSVVLMILAVAAIAFLSMRFAFPQF |
Ga0212123_103646102 | 3300022557 | Iron-Sulfur Acid Spring | VSSNRKSGIHVAWTTVTYRSVALLVLAGFAIFLIAMRVAFPQFTQNTLKAGENAGS |
Ga0224568_10245152 | 3300024220 | Plant Litter | VSSDDRKSGIHVAWTTITYRSVVLLILAAVAILFISIRLVFPQFTQNS |
Ga0228598_10055502 | 3300024227 | Rhizosphere | VSSPTRKPGIHIAWKTVTYRSVALLIVAGAVVFLIAIRLTFPQFTENSIK |
Ga0208819_10449482 | 3300025498 | Peatland | VSSSTRKPGIHIAWTTVTYRSVALMILAGVMLCLLGMRLAF |
Ga0207693_112570912 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | VSSANRKPGIHVAWTTVTYRSVILLILAVAAVFFIAMRVAFPQFTQNSLKAADNVAGKLLERV |
Ga0209152_102989832 | 3300026325 | Soil | VSSDNRKPGIHIKWKTVTYRSVALLILAGALILFVGMRIAFPQFTQASI |
Ga0208842_1024641 | 3300026724 | Soil | VSSNNRKPGIHVAWTTVTYRSIALLVLAVAAVCFIAMRMAFPQFTEAGIKKAD |
Ga0209222_10962651 | 3300027559 | Forest Soil | VSSQTRKPGIHVAWTTVTYRSVALMILAGAAIFFGAMKIAFPQFTDNSIKAANGVA |
Ga0209733_11427781 | 3300027591 | Forest Soil | VSSDNRKPGIHVAWTTVTYRSVVLMVMAGVAVFFIFLRVTFPQFTENSVKAGENAA |
Ga0209248_100778912 | 3300027729 | Bog Forest Soil | VSSQTRKPGYHIAWKTVTYRSVALLILAGAAIFFVALRLTFPQFTENSIKAASGVADK |
Ga0209038_100843841 | 3300027737 | Bog Forest Soil | VSSSTRKPGIHVAWKTVTYRSVALLIVAGAAVFFVAVRFTFPQFTESGI |
Ga0209908_102163761 | 3300027745 | Thawing Permafrost | VSSQTRKPGIHIAWTTVTYRSVALMILAGAAVFLAAVRFTFPQ |
Ga0209655_100158283 | 3300027767 | Bog Forest Soil | VSSQTRKPGIHIAWRTVTYRSVALMILAGALLCLLGMRLAFPQFTESGIQAAD |
Ga0209656_104735522 | 3300027812 | Bog Forest Soil | VSSDNRKPGIHIAWTTITYRSVILLILAVGAVLFIAMRVAFPQFTQNQVKAGAN |
Ga0209060_105449982 | 3300027826 | Surface Soil | VSSANRKPGIHVAWTTVTYRSMALLILAVAAVFFIAVRATFPQFTANSIKKADDVAGKLLER |
Ga0209580_100377931 | 3300027842 | Surface Soil | VSSNSRKTGVHIAWTTITYRSVALLVLAVCAIFFIAMRVAFPQFTQNTLQKADDVASR |
Ga0209693_100484052 | 3300027855 | Soil | VSSDNRKSGIHVAWTTITYRSVVLLVLAVIAILFVAMRFAFPQFTQNSVKAGENLAG |
Ga0209590_109427521 | 3300027882 | Vadose Zone Soil | VSSDNRKPGIHIKWKTVTYRSVALLILAGALILFVGMRIAFPQFTQAGIRAADNVANKIL |
Ga0209275_105163911 | 3300027884 | Soil | VSSSTRKPGIHVAWKTVTYRSVALLILAGAAVFFIALRFTFP |
Ga0209275_105890162 | 3300027884 | Soil | VSSNDRKPGIHVAWTTVTYRSVALLILAGLAVFFIAVRAAFPQFTDNSLKS |
Ga0209624_102158241 | 3300027895 | Forest Soil | VSSPTRKPGIHVAWTTVTYRSVALMVLAGAVVLLLGMRFTFPQFTEN |
Ga0209624_107238772 | 3300027895 | Forest Soil | VSSVNRKPGIHVAWTTVTYRSVALIVIAVAVLFFLAARMAFPQFTENGIKK |
Ga0265354_10118911 | 3300028016 | Rhizosphere | VSSSTRKPGIHVAWKTVTYRSVALLIVAGAAVFFVAMRFTFPQF |
Ga0302218_101590042 | 3300028863 | Palsa | VSSPTRKPGIHIAWTTVTYRSVALMIIAGLAVVLTGIRLTFPQFTENTIKA |
Ga0302218_102449531 | 3300028863 | Palsa | VSSDDRKSGIHVAWTTITYRSVVLLVLAAVAILFIAIRLVFPQFTQNSVKAGENLAGRLL |
Ga0302278_102371221 | 3300028866 | Bog | VSSQTRKPGIHIAWKAVTYRSVALLIVAGAAIFFVAIRLTFPQF |
Ga0311329_109721411 | 3300029907 | Bog | VSSPTRKPGIHIAWTTVTYRSVALLIIAGLAVVLTGIRLTFPQFTESTIKAAGGVA |
Ga0311358_108923921 | 3300029915 | Bog | VSSSTRKPGIHIAWKTVTYRSVALLIVGGAAVLFIGVRLTF |
Ga0302277_11300803 | 3300029982 | Bog | VSSQTRKPTVHIAWKAVTYRSVALLIVIVAAISTLGMRLAFPQFTAS |
Ga0311339_113525711 | 3300029999 | Palsa | VATTTRKPGIHVAWKTVTYRSVALLILAGAVVFFIALRVAFPTFTQSGIDAADHAAGKV |
Ga0311338_118235061 | 3300030007 | Palsa | VSSQTRKPGIHIAWKTVTYRSVALMIVAGAAVLLVGVRLTFPQFTENS |
Ga0302177_105350981 | 3300030053 | Palsa | VSSVNRKPGIHVAWTTVTYRSVALLILAGAAILFVAMRVAFPQFTQNSVKAANNV |
Ga0302182_102958741 | 3300030054 | Palsa | VSSAIRKPGIHVRWKTVTYRSVALIVLAALALLFLGMRMAFPQFTDNGVKAAGNVAG |
Ga0310686_1005697291 | 3300031708 | Soil | VSSSTRKPGIHVAWKTVTYRSVALLILAGAVVFFVAVRFTFPQFTES |
Ga0310686_1070741671 | 3300031708 | Soil | MFFVHVSSSTRKPGINIAWTTVTYRSVAMMILAGVLLLLLAMRFTFPQFTENGIKAAD |
Ga0307476_102606251 | 3300031715 | Hardwood Forest Soil | VSSANRKPGIHIRWKTVTYRSVALLILGGALLFFVGLRLAFPQFTQSGIQAADNA |
Ga0307474_105720362 | 3300031718 | Hardwood Forest Soil | VSSSTRKPGIHIAWKTVTYRSVALLIVAGAAIFFVAVRFTFPQFTESSLKAAASLA |
Ga0307475_110250802 | 3300031754 | Hardwood Forest Soil | VSSANRKSGIHVAWTTITYRSVALLILAAAAIFFVVLRFAFPQFTDNSLKAGENVASKVLERI |
Ga0307471_1011452551 | 3300032180 | Hardwood Forest Soil | VSSPIRKPGIHLAWTTVTYRSVALLIVAGAVVFLIAIRLTFPQFT |
Ga0335079_122526771 | 3300032783 | Soil | VSAENKPGIHVAWKTVTYRSVILTIVGGLVLFSVGLHFAFPQATEK |
Ga0335078_117393701 | 3300032805 | Soil | VSSDNRKPGIHIAWTTVTYRSVALLILAVCAILFIAMRAVFPQFTQNSIQKVDD |
Ga0335070_105984422 | 3300032829 | Soil | VSSDDRKPGIHIAWTTVTYRSVLLMIVGVALIFFIAMRAAFPQFTQNTIQKVDGVASRV |
Ga0335074_106102391 | 3300032895 | Soil | VSSANRKPGVHIAWTTVTYRSVVSLILAVVAIIFIAMRAAFPQFTQAGLNKADDVASSLL |
Ga0316212_10421311 | 3300033547 | Roots | VSSDDRKPGIHVAWTTITYRSVFLLILAGAAILFIAMRAVFPQFTQNTVKAS |
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