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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F097737 |
| Family Type | Metagenome |
| Number of Sequences | 104 |
| Average Sequence Length | 52 residues |
| Representative Sequence | VSSANRKPGIHVAWTTVTYRSVALLILAGAAVFFIAMRVAFPQFTQNGVQ |
| Number of Associated Samples | 98 |
| Number of Associated Scaffolds | 104 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 100.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.96 % |
| % of genes from short scaffolds (< 2000 bps) | 0.96 % |
| Associated GOLD sequencing projects | 94 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.54 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.500 % of family members) |
| Environment Ontology (ENVO) | Unclassified (29.808 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (68.269 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 39.74% β-sheet: 2.56% Coil/Unstructured: 57.69% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.54 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 104 Family Scaffolds |
|---|---|---|
| PF13231 | PMT_2 | 12.50 |
| PF00171 | Aldedh | 10.58 |
| PF01588 | tRNA_bind | 3.85 |
| PF00857 | Isochorismatase | 3.85 |
| PF08924 | DUF1906 | 1.92 |
| PF12623 | Hen1_L | 0.96 |
| PF01432 | Peptidase_M3 | 0.96 |
| PF13442 | Cytochrome_CBB3 | 0.96 |
| PF08264 | Anticodon_1 | 0.96 |
| PF03713 | DUF305 | 0.96 |
| PF02922 | CBM_48 | 0.96 |
| PF01850 | PIN | 0.96 |
| COG ID | Name | Functional Category | % Frequency in 104 Family Scaffolds |
|---|---|---|---|
| COG0014 | Gamma-glutamyl phosphate reductase | Amino acid transport and metabolism [E] | 10.58 |
| COG1012 | Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase | Lipid transport and metabolism [I] | 10.58 |
| COG4230 | Delta 1-pyrroline-5-carboxylate dehydrogenase | Amino acid transport and metabolism [E] | 10.58 |
| COG0073 | tRNA-binding EMAP/Myf domain | Translation, ribosomal structure and biogenesis [J] | 3.85 |
| COG1335 | Nicotinamidase-related amidase | Coenzyme transport and metabolism [H] | 3.85 |
| COG1535 | Isochorismate hydrolase | Secondary metabolites biosynthesis, transport and catabolism [Q] | 3.85 |
| COG2517 | Predicted RNA-binding protein, contains C-terminal EMAP domain | General function prediction only [R] | 3.85 |
| COG0339 | Zn-dependent oligopeptidase, M3 family | Posttranslational modification, protein turnover, chaperones [O] | 0.96 |
| COG1164 | Oligoendopeptidase F | Amino acid transport and metabolism [E] | 0.96 |
| COG3544 | Uncharacterized conserved protein, DUF305 family | Function unknown [S] | 0.96 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300027895|Ga0209624_10723877 | Not Available | 656 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 12.50% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 7.69% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 5.77% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 5.77% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 5.77% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 5.77% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 4.81% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 4.81% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 3.85% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 3.85% |
| Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 3.85% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 2.88% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 2.88% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 2.88% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.88% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 1.92% |
| Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 1.92% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.92% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 1.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.92% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.96% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil | 0.96% |
| Thawing Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost | 0.96% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 0.96% |
| Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 0.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.96% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere | 0.96% |
| Roots | Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots | 0.96% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.96% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 0.96% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2189573001 | Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml) | Environmental | Open in IMG/M |
| 3300000567 | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 | Environmental | Open in IMG/M |
| 3300001205 | Grasslands soil microbial communities from Hopland, California, USA - 2 | Environmental | Open in IMG/M |
| 3300001471 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 | Environmental | Open in IMG/M |
| 3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
| 3300001686 | Grasslands soil microbial communities from Hopland, California, USA | Environmental | Open in IMG/M |
| 3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004153 | Grasslands soil microbial communities from Hopland, California, USA (version 2) | Environmental | Open in IMG/M |
| 3300005181 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
| 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006086 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) | Host-Associated | Open in IMG/M |
| 3300006893 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG | Environmental | Open in IMG/M |
| 3300009624 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 | Environmental | Open in IMG/M |
| 3300009633 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 | Environmental | Open in IMG/M |
| 3300009672 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG | Environmental | Open in IMG/M |
| 3300009700 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG | Environmental | Open in IMG/M |
| 3300009824 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG | Environmental | Open in IMG/M |
| 3300009839 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG | Environmental | Open in IMG/M |
| 3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300012351 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG | Environmental | Open in IMG/M |
| 3300012929 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014169 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG | Environmental | Open in IMG/M |
| 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014493 | Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG | Environmental | Open in IMG/M |
| 3300016357 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 | Environmental | Open in IMG/M |
| 3300016422 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300017961 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG | Environmental | Open in IMG/M |
| 3300017973 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG | Environmental | Open in IMG/M |
| 3300017975 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018007 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5 | Environmental | Open in IMG/M |
| 3300018086 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG | Environmental | Open in IMG/M |
| 3300018090 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021402 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O | Environmental | Open in IMG/M |
| 3300021404 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300022557 | Paint Pots_combined assembly | Environmental | Open in IMG/M |
| 3300024220 | Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU5 | Environmental | Open in IMG/M |
| 3300024227 | Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 | Host-Associated | Open in IMG/M |
| 3300025498 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150 (SPAdes) | Environmental | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026325 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes) | Environmental | Open in IMG/M |
| 3300026724 | Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN410 (SPAdes) | Environmental | Open in IMG/M |
| 3300027559 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027591 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027729 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027737 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027745 | Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M | Environmental | Open in IMG/M |
| 3300027767 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027812 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027826 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027842 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027855 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027882 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027884 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027895 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300028016 | Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 | Host-Associated | Open in IMG/M |
| 3300028863 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1 | Environmental | Open in IMG/M |
| 3300028866 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2 | Environmental | Open in IMG/M |
| 3300029907 | I_Bog_N1 coassembly | Environmental | Open in IMG/M |
| 3300029915 | III_Bog_E1 coassembly | Environmental | Open in IMG/M |
| 3300029982 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1 | Environmental | Open in IMG/M |
| 3300029999 | I_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300030053 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2 | Environmental | Open in IMG/M |
| 3300030054 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
| 3300031718 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 | Environmental | Open in IMG/M |
| 3300031754 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032829 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 | Environmental | Open in IMG/M |
| 3300032895 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 | Environmental | Open in IMG/M |
| 3300033547 | Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 | Host-Associated | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| FD2_00576970 | 2189573001 | Grass Soil | VSSDNRKPGIHVAWTTVTYRSLAVLIIGVAAAFFLSMRLAFPQFTDTSVKKASDVAGK |
| JGI12270J11330_102068181 | 3300000567 | Peatlands Soil | VRFFGSKVSADNRKPGIHIAWTTVTYRSVALMIVAGAAIFFFAVRMTFPQFTESGIKKVDDVA |
| C688J13580_10357291 | 3300001205 | Soil | VSSDNRKPGIHVAWTTVTYRSLALLIIAVGAGFFVSMRLVFPQFTQSSVKKAGDVTSKLL |
| JGI12712J15308_100137382 | 3300001471 | Forest Soil | VGLTGSFVKVSSPIRKPGIHVRWKQVTYRSVALLVLAGAAIFLVAMHLVFPQFTD |
| JGI12635J15846_101669942 | 3300001593 | Forest Soil | VSSPNRKPGIHVAWTTVTYRSVALMVLAGGVVLLLGMRFTFPQFTEN |
| C688J18823_106239941 | 3300001686 | Soil | VSSNNRKPGIHVAWTTITYRSVALLILATAAIAFIALRFTFPQFTQNTLQKAGDVT |
| Ga0062385_104288211 | 3300004080 | Bog Forest Soil | VSSVNRKPGIHVAWTTITYRSVALIVVGVAALFFVAARVAFPQFTESGIK |
| Ga0062387_1008979772 | 3300004091 | Bog Forest Soil | VASDNRKPGIHVAWTTVTYRSVILLILAALAIVFGAMRVAFPQFTQN |
| Ga0063455_1000668671 | 3300004153 | Soil | VSSDNRKPGIHVAWTTVTYRSLALLIIAVGAGFFVSMRLVFPQFTQSSVKKAGDVTSKL |
| Ga0066678_103656282 | 3300005181 | Soil | VSSDNRKPGIHIKWKTVTYRSVALLILAGALILFVGMRIAFPQFTQASIQAADNVANKI |
| Ga0070711_1005030041 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | VSSANRKPGIHVAWTTVTYRSVILLILAVAAVFFIAMRVAFPQFTQNSLKAADNV |
| Ga0070761_102609072 | 3300005591 | Soil | VSSDNRKSGIHVAWTTITYRSVVLLCLAVVAILFIAVRVAFPQFTQNSVQAGE |
| Ga0070762_102848301 | 3300005602 | Soil | VSSSTRKPGIHIAWKTVTYRSVALLIVAGAAIFFVAVRFTFPQFTESGIKA |
| Ga0070763_102584072 | 3300005610 | Soil | VSSDNRKSGIHVAWTTITYRSVVLLVLAVIAILFVAMRFAFPQFTQNSVKA |
| Ga0070717_104102111 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | VSSNSRKTGVHIAWTTITYRSVALLVLAVCAIFFVAMRLAFPQFT |
| Ga0075017_1009025842 | 3300006059 | Watersheds | VSTDSRKPGIHIAWTAVSYRSVALMIMGVAALFFAAMWFTFPQFTQTGLKKSEDLAGKLLEKVAGIA |
| Ga0075019_108724601 | 3300006086 | Watersheds | VLVSSTTSKPGLHIAWKTVTYRSVALLILAVVVVLLVAVRVSFPQFSEHAIQAADK |
| Ga0070765_1001394432 | 3300006176 | Soil | VSSDDRKPGLHVAWTTVSYRSVALLIIAGAGIFFGAMWFTFPQFTQSSLKKADDVFSK |
| Ga0097621_1008454042 | 3300006237 | Miscanthus Rhizosphere | VSSDNRKSGIHVAWTTITYRSVALLILAGLAIFGVAVRFTFPQ |
| Ga0073928_103736961 | 3300006893 | Iron-Sulfur Acid Spring | VSSPNRKSGIHVAWTTVTYRSVVLMVLAALAVFFMVLHAVFPQFT |
| Ga0116105_12517251 | 3300009624 | Peatland | VSSSTRKPGIHIAWKTVTYRSVALLIVGGAVVLFIGVRLTFPQFT |
| Ga0116129_10617712 | 3300009633 | Peatland | VHVSSQTRKPGVHIAWKTVTYRSVALMILSGVVICLLGMRLAFPQFTE |
| Ga0116215_13061441 | 3300009672 | Peatlands Soil | VSADNRKPGIHIAWTTVTYRSVALMIVAGAAIFFFAVRMTFPQFTESGIKKVDDVAGRLLEKV |
| Ga0116217_107203762 | 3300009700 | Peatlands Soil | VSSSTRKPGIHIAWTTVTYRSVALMILAGALLFLLAMKVAFPQ |
| Ga0116219_100808361 | 3300009824 | Peatlands Soil | VSSDNRKPGIHVAWTTITYRSVALLVIAVAVVFFIAMRVAFPQFTENSVKA |
| Ga0116223_109084441 | 3300009839 | Peatlands Soil | VSSPTRKPGIHIAWKTVTYRSVALLIIGGFAVVLIGIRLTFP |
| Ga0126373_103214203 | 3300010048 | Tropical Forest Soil | VSSDDRKPGIHIAWTTVTYRSVALLIFAVAAAFFIAMHFAFPQ |
| Ga0126378_103730811 | 3300010361 | Tropical Forest Soil | VSSDDRKPGIHIAWTTVTYRSVALLIFAVAAAFFIAMHFAFPQFTDNS |
| Ga0126379_134738622 | 3300010366 | Tropical Forest Soil | VSSDNRKPGIHVAWTTVTYRSLVLLTLAVVAALFIALRFTFPQFTENTVK |
| Ga0137386_106867791 | 3300012351 | Vadose Zone Soil | VSSDNRKSGIHVAWTTITYRSVALLILAGVAIFGVVVRFTFPQFTDNSIKAGEN |
| Ga0137404_111675032 | 3300012929 | Vadose Zone Soil | VSSDNRKPGIHVAWTTVTYRSVALLILAVAAVLFIGMRVAFPQFTQNGVHAVNNVAGKLLEKVA |
| Ga0126369_119771661 | 3300012971 | Tropical Forest Soil | VSSDDRKPGIHIAWTTVTYRSVALLIFAVAAAFFIAMHFAFPQFTDNSI |
| Ga0157378_130625931 | 3300013297 | Miscanthus Rhizosphere | VSSDNRKPGIHVAWTTITYRSVALLILAGLAIFGVAVRFTFP |
| Ga0181531_102988502 | 3300014169 | Bog | VSSDNRKSGIHVAWTTITYRSVVLLVLAVIAILFIAMRMAFPQFTQNSVK |
| Ga0163163_105855751 | 3300014325 | Switchgrass Rhizosphere | VSPNRKPGIHVEWTSVTYRSVLLAVVGVAALFSLGMRLAFPQFTETTVKAAS |
| Ga0182016_106585301 | 3300014493 | Bog | VSSSTRKPGIHIAWKTVTYRSVALLIVGGAAVLFIGVRLTFPQFTESSIKAASG |
| Ga0182032_119543222 | 3300016357 | Soil | VASNNRKPGIHVAWTTITYRSVALLILAVAAIAFISIRFAFPQFTQN |
| Ga0182039_105413771 | 3300016422 | Soil | MHIAWTTITYRSVALIILAVGAIFFVAMRIAFPQFTQASLQKAGDVTSKVLEKVA |
| Ga0187817_111381051 | 3300017955 | Freshwater Sediment | VSSNDRKPGIHVAWTTVTYRSVALLILAVLAVFFFAMHAAFPQFTDNSLKSAGSVANKLL |
| Ga0187778_105486371 | 3300017961 | Tropical Peatland | VSSPNRKPGFHIAWTTVTYRSVALLILAGVAIFYIFMRATFPQFTENSLKKADDAAGRLLEHVAG |
| Ga0187780_104724412 | 3300017973 | Tropical Peatland | VAPENRKPGFHIAWTTITYRSVVLLILAVAGGFFLFMRATFPQFTQNTLQKADDVASK |
| Ga0187780_109933271 | 3300017973 | Tropical Peatland | VSSDNRKPGIHIAWTTVTYRSVALLILAVVAVFFIAMRAAFPQFTQNTLQKAGDVTSKVLEK |
| Ga0187782_110204092 | 3300017975 | Tropical Peatland | VSSANRKPGIHIAWTTVTYRSVALLILAGFAVCFIAMRMAFPQFTENGLKKANDVAGKLLEKV |
| Ga0187805_106490471 | 3300018007 | Freshwater Sediment | VSSDNRKPGIHVAWTTVTYRSVALLIVGVAVVFFAAVRVTFPQFTQSSMKKANDVA |
| Ga0187769_112867252 | 3300018086 | Tropical Peatland | VSSANRKPGIHIAWTTVTYRSVVLLALTVVGFLFLAVRVTFPQFTAN |
| Ga0187770_117961882 | 3300018090 | Tropical Peatland | VSANRKPGIHIAWKTVTYRSVLLTVLAGVLLFSIGIRLTFPQFTENSIKAAD |
| Ga0210407_100304231 | 3300020579 | Soil | VSSSTRKPGIHIAWTTVTYRSVALMILAGLIVFLVGMRFTFPQFTENSI |
| Ga0210403_111755841 | 3300020580 | Soil | VALVSPNRKPGIHIAWKTVTYRSVMLLVLLGLVVFFLGVRLTFPQFTDNGLKAVNGL |
| Ga0210399_110384721 | 3300020581 | Soil | VSSANRKPGIHVAWTTVTYRSVALLIMAVAAVFFIAMRVAFPQFTQNGVQAVNNV |
| Ga0210408_108604411 | 3300021178 | Soil | VSSDNRKPGLHVAWTTVTYRSVALMILGVAVVFSIGMRVAFPQFTESSVKSASNVASK |
| Ga0210385_113154872 | 3300021402 | Soil | VSSANRKPGIHVAWTTVTYRSVALLILAGAAILFAAMRVAFPQFTQSGVKAANNIA |
| Ga0210389_113537802 | 3300021404 | Soil | VSSDNRKPGIHVAWKTVTYRSVALAILAIAALIFLGLRVAFPQFTQSTVKAAGDVAGKLL |
| Ga0210383_100694271 | 3300021407 | Soil | VSSQTRKPGIHIAWKTVTYRSVALLILAGAAVCFVAMRLTFPQFTENSVKAVGSVANK |
| Ga0210394_101886481 | 3300021420 | Soil | VSSPTRKPGIHVAWTTVTYRSVALMVLAGAVVLLLGMRFTFP |
| Ga0210394_107174982 | 3300021420 | Soil | VPSDNRKSGIHVAWTTITYRSVALLIMAGAVIFYFVVRFTFPQF |
| Ga0210384_111732971 | 3300021432 | Soil | VSSANRKPGIHVAWTTVTYRSVALLILAGAAVFFIAMRVAFPQFTQNGVQ |
| Ga0210392_111040101 | 3300021475 | Soil | VSSPTRKPGIHIAWKTVTYRSVALLIVAGAAVVLIGIRL |
| Ga0210410_107489001 | 3300021479 | Soil | VSSSTRKPGIHVAWKTVTYRSVALLILAGAVVFFVAVRFTFPQFTDSGIKAASGFASRAL |
| Ga0210409_115174421 | 3300021559 | Soil | VSSPIRKPGIHIAWTTVTYRSVALLIVAGAAVFFIAVRFTFPQFTEN |
| Ga0126371_129374961 | 3300021560 | Tropical Forest Soil | VASNNRKPGIHIAWTTITYRSVVLMILAVAAIAFLSMRFAFPQF |
| Ga0212123_103646102 | 3300022557 | Iron-Sulfur Acid Spring | VSSNRKSGIHVAWTTVTYRSVALLVLAGFAIFLIAMRVAFPQFTQNTLKAGENAGS |
| Ga0224568_10245152 | 3300024220 | Plant Litter | VSSDDRKSGIHVAWTTITYRSVVLLILAAVAILFISIRLVFPQFTQNS |
| Ga0228598_10055502 | 3300024227 | Rhizosphere | VSSPTRKPGIHIAWKTVTYRSVALLIVAGAVVFLIAIRLTFPQFTENSIK |
| Ga0208819_10449482 | 3300025498 | Peatland | VSSSTRKPGIHIAWTTVTYRSVALMILAGVMLCLLGMRLAF |
| Ga0207693_112570912 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | VSSANRKPGIHVAWTTVTYRSVILLILAVAAVFFIAMRVAFPQFTQNSLKAADNVAGKLLERV |
| Ga0209152_102989832 | 3300026325 | Soil | VSSDNRKPGIHIKWKTVTYRSVALLILAGALILFVGMRIAFPQFTQASI |
| Ga0208842_1024641 | 3300026724 | Soil | VSSNNRKPGIHVAWTTVTYRSIALLVLAVAAVCFIAMRMAFPQFTEAGIKKAD |
| Ga0209222_10962651 | 3300027559 | Forest Soil | VSSQTRKPGIHVAWTTVTYRSVALMILAGAAIFFGAMKIAFPQFTDNSIKAANGVA |
| Ga0209733_11427781 | 3300027591 | Forest Soil | VSSDNRKPGIHVAWTTVTYRSVVLMVMAGVAVFFIFLRVTFPQFTENSVKAGENAA |
| Ga0209248_100778912 | 3300027729 | Bog Forest Soil | VSSQTRKPGYHIAWKTVTYRSVALLILAGAAIFFVALRLTFPQFTENSIKAASGVADK |
| Ga0209038_100843841 | 3300027737 | Bog Forest Soil | VSSSTRKPGIHVAWKTVTYRSVALLIVAGAAVFFVAVRFTFPQFTESGI |
| Ga0209908_102163761 | 3300027745 | Thawing Permafrost | VSSQTRKPGIHIAWTTVTYRSVALMILAGAAVFLAAVRFTFPQ |
| Ga0209655_100158283 | 3300027767 | Bog Forest Soil | VSSQTRKPGIHIAWRTVTYRSVALMILAGALLCLLGMRLAFPQFTESGIQAAD |
| Ga0209656_104735522 | 3300027812 | Bog Forest Soil | VSSDNRKPGIHIAWTTITYRSVILLILAVGAVLFIAMRVAFPQFTQNQVKAGAN |
| Ga0209060_105449982 | 3300027826 | Surface Soil | VSSANRKPGIHVAWTTVTYRSMALLILAVAAVFFIAVRATFPQFTANSIKKADDVAGKLLER |
| Ga0209580_100377931 | 3300027842 | Surface Soil | VSSNSRKTGVHIAWTTITYRSVALLVLAVCAIFFIAMRVAFPQFTQNTLQKADDVASR |
| Ga0209693_100484052 | 3300027855 | Soil | VSSDNRKSGIHVAWTTITYRSVVLLVLAVIAILFVAMRFAFPQFTQNSVKAGENLAG |
| Ga0209590_109427521 | 3300027882 | Vadose Zone Soil | VSSDNRKPGIHIKWKTVTYRSVALLILAGALILFVGMRIAFPQFTQAGIRAADNVANKIL |
| Ga0209275_105163911 | 3300027884 | Soil | VSSSTRKPGIHVAWKTVTYRSVALLILAGAAVFFIALRFTFP |
| Ga0209275_105890162 | 3300027884 | Soil | VSSNDRKPGIHVAWTTVTYRSVALLILAGLAVFFIAVRAAFPQFTDNSLKS |
| Ga0209624_102158241 | 3300027895 | Forest Soil | VSSPTRKPGIHVAWTTVTYRSVALMVLAGAVVLLLGMRFTFPQFTEN |
| Ga0209624_107238772 | 3300027895 | Forest Soil | VSSVNRKPGIHVAWTTVTYRSVALIVIAVAVLFFLAARMAFPQFTENGIKK |
| Ga0265354_10118911 | 3300028016 | Rhizosphere | VSSSTRKPGIHVAWKTVTYRSVALLIVAGAAVFFVAMRFTFPQF |
| Ga0302218_101590042 | 3300028863 | Palsa | VSSPTRKPGIHIAWTTVTYRSVALMIIAGLAVVLTGIRLTFPQFTENTIKA |
| Ga0302218_102449531 | 3300028863 | Palsa | VSSDDRKSGIHVAWTTITYRSVVLLVLAAVAILFIAIRLVFPQFTQNSVKAGENLAGRLL |
| Ga0302278_102371221 | 3300028866 | Bog | VSSQTRKPGIHIAWKAVTYRSVALLIVAGAAIFFVAIRLTFPQF |
| Ga0311329_109721411 | 3300029907 | Bog | VSSPTRKPGIHIAWTTVTYRSVALLIIAGLAVVLTGIRLTFPQFTESTIKAAGGVA |
| Ga0311358_108923921 | 3300029915 | Bog | VSSSTRKPGIHIAWKTVTYRSVALLIVGGAAVLFIGVRLTF |
| Ga0302277_11300803 | 3300029982 | Bog | VSSQTRKPTVHIAWKAVTYRSVALLIVIVAAISTLGMRLAFPQFTAS |
| Ga0311339_113525711 | 3300029999 | Palsa | VATTTRKPGIHVAWKTVTYRSVALLILAGAVVFFIALRVAFPTFTQSGIDAADHAAGKV |
| Ga0311338_118235061 | 3300030007 | Palsa | VSSQTRKPGIHIAWKTVTYRSVALMIVAGAAVLLVGVRLTFPQFTENS |
| Ga0302177_105350981 | 3300030053 | Palsa | VSSVNRKPGIHVAWTTVTYRSVALLILAGAAILFVAMRVAFPQFTQNSVKAANNV |
| Ga0302182_102958741 | 3300030054 | Palsa | VSSAIRKPGIHVRWKTVTYRSVALIVLAALALLFLGMRMAFPQFTDNGVKAAGNVAG |
| Ga0310686_1005697291 | 3300031708 | Soil | VSSSTRKPGIHVAWKTVTYRSVALLILAGAVVFFVAVRFTFPQFTES |
| Ga0310686_1070741671 | 3300031708 | Soil | MFFVHVSSSTRKPGINIAWTTVTYRSVAMMILAGVLLLLLAMRFTFPQFTENGIKAAD |
| Ga0307476_102606251 | 3300031715 | Hardwood Forest Soil | VSSANRKPGIHIRWKTVTYRSVALLILGGALLFFVGLRLAFPQFTQSGIQAADNA |
| Ga0307474_105720362 | 3300031718 | Hardwood Forest Soil | VSSSTRKPGIHIAWKTVTYRSVALLIVAGAAIFFVAVRFTFPQFTESSLKAAASLA |
| Ga0307475_110250802 | 3300031754 | Hardwood Forest Soil | VSSANRKSGIHVAWTTITYRSVALLILAAAAIFFVVLRFAFPQFTDNSLKAGENVASKVLERI |
| Ga0307471_1011452551 | 3300032180 | Hardwood Forest Soil | VSSPIRKPGIHLAWTTVTYRSVALLIVAGAVVFLIAIRLTFPQFT |
| Ga0335079_122526771 | 3300032783 | Soil | VSAENKPGIHVAWKTVTYRSVILTIVGGLVLFSVGLHFAFPQATEK |
| Ga0335078_117393701 | 3300032805 | Soil | VSSDNRKPGIHIAWTTVTYRSVALLILAVCAILFIAMRAVFPQFTQNSIQKVDD |
| Ga0335070_105984422 | 3300032829 | Soil | VSSDDRKPGIHIAWTTVTYRSVLLMIVGVALIFFIAMRAAFPQFTQNTIQKVDGVASRV |
| Ga0335074_106102391 | 3300032895 | Soil | VSSANRKPGVHIAWTTVTYRSVVSLILAVVAIIFIAMRAAFPQFTQAGLNKADDVASSLL |
| Ga0316212_10421311 | 3300033547 | Roots | VSSDDRKPGIHVAWTTITYRSVFLLILAGAAILFIAMRAVFPQFTQNTVKAS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |