3300026723: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized - NN357 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026723
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054705 | Ga0208342
• Sample Name: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized - NN357 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19484778
• Sequencing Scaffolds: 51
• Novel Protein Genes: 61
• Associated Families: 61

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria	5
Not Available	19
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → grassland soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Chapel Hill, North Carolina, USA
• Coordinates
  • Lat. (^o): 35.913
  • Long. (^o): -79.056
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000098	Metagenome / Metatranscriptome	2300	Y
F000136	Metagenome / Metatranscriptome	1961	Y
F000436	Metagenome / Metatranscriptome	1146	Y
F000702	Metagenome / Metatranscriptome	929	Y
F000708	Metagenome / Metatranscriptome	926	Y
F001261	Metagenome / Metatranscriptome	735	Y
F003316	Metagenome	494	Y
F003566	Metagenome / Metatranscriptome	479	Y
F003683	Metagenome / Metatranscriptome	474	Y
F004492	Metagenome	436	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208342_100078	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1687
Ga0208342_100090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1571
Ga0208342_100091	All Organisms → cellular organisms → Bacteria	1564
Ga0208342_100153	Not Available	1314
Ga0208342_100209	Not Available	1208
Ga0208342_100269	All Organisms → cellular organisms → Bacteria	1110
Ga0208342_100510	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	905
Ga0208342_100668	All Organisms → cellular organisms → Bacteria → Acidobacteria	841
Ga0208342_100868	Not Available	780
Ga0208342_100900	Not Available	771

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208342_100078	Ga0208342_1000781	F000708	MTKLDLALSQIAARFTQHDVEWSRGAFMIIDRRTTNPIARLRPIPDTDRFELFYWSNAKGRWTTFGNFGRMKLMLESAHEVVESDPMFRIPRGR
Ga0208342_100090	Ga0208342_1000901	F054379	MPRASWRGFLRLSLVSCPIYLSPATTRTKPIRLHQVWQPAPVDVDEDDLPDLGGSAPSVTRLRADNAGASGDESAAATRITLR
Ga0208342_100091	Ga0208342_1000911	F018629	MVTDKNTQIRIIKQVMAGGIPESQPVSEERQKKDATAELICSVSGWVAEFKGRRRPDPRITFQTLFEEV
Ga0208342_100153	Ga0208342_1001534	F037140	MPDFSFSQALTASQADFRPLANWKYRRLPYRALVTILINATTTGVRETIDAGAQNIKQKSPVTSGATAGVIPIHFNTPVVQFMADPFDEIIISI
Ga0208342_100209	Ga0208342_1002092	F053205	MTDVLTDLDKAVIEALGAHYARGGEAAFDEAASRLVVTVCAVLAHTRGTARLIDLIKLVEAVNAIGKKHSGLLH
Ga0208342_100209	Ga0208342_1002094	F075201	VIEVEAMSVAAQRCKILAHIFGRVLQNLDQVQNSSTAYACAFDHSKIDMAKNAIQYVIAELEAQATWDSTD
Ga0208342_100269	Ga0208342_1002691	F045337	VRGFLKQFAPDVFRPDEISILEDALDDVWLRVENSNAPWASDDYASTARTILARYIITMAKGGERDAKWLADSALLYLSQQKLTRTPPETV
Ga0208342_100510	Ga0208342_1005102	F030215	VITLPAAPIIRLRGWVIAAWAALALLFGPRACHVQQALALRGSGSETTEASRATELLKKAFPTPFADYVAIVIHGP
Ga0208342_100668	Ga0208342_1006681	F013831	VLVRLPNKRAVRAAIHQLSTSGGVIHLEKPLDEKLEVEMIFHISKATIRSKAQMLFPMWATQGWMQPFRFVDLAEKSREILDTKLKAFLGEAANGAAAGA
Ga0208342_100668	Ga0208342_1006683	F055055	MKRLSFLVSLTNNDNDYQQEQAAAAEKTARRLGVEVKIIHANNDA
Ga0208342_100868	Ga0208342_1008681	F104940	MIRTSRRLARGAWLPIALLVAVGCKQGPTPEVQARLDSLSQASSQRDRLMQEVAENTGLTVAWVREVVK
Ga0208342_100900	Ga0208342_1009001	F045913	MEMFLIVLAVIAGTGIVFFLFVIEPRRKIYDYDPRDFDPRDPR
Ga0208342_100963	Ga0208342_1009631	F024366	MSSSNTNNVRPNGSWIAILRDKLRLGLRFRVRLPEIDDVRNPLTAHAAIGSPGRARLFKGARATKRFLLVFGIVVLMMGANSAFAATQTCSIITGGSVGRTGVNPTYLANLDGRANEGCTILITLNANGSIVTTHPNPATSFDSGLDDNLIGVINNTSQTITGLQISSA
Ga0208342_101027	Ga0208342_1010272	F009678	AVDSIVADSGAPAPIADNMSRVRKLVFMGRVAPRGDFVNSVPSDSVLAQGAVQLLGNFRDFLPRLPNDGLRLGAAWTDTVETTQKGNGSEVSRHAITQSTAAGWEDHLGAPSLRVLANQTFRVAGSGKNMGQPFELSGAGTGTSVAYIAADGRYLGGESQDSTTLTVRLTVRGVAIPVIQLTRTTIAVLP
Ga0208342_101102	Ga0208342_1011022	F045290	LFRWGRQAAINKRAKSMVRMVKLISDGLRTKNYDEFVASFSNPAREPDESDRRGGQLRFQMRFSPTCWYDAVAEYPRTGGTPHFYMHGGGDDWGVFISGNAKANHGVTVDLNVPSGSHAGCDARAMVHALQAVRGWSKFSDLERALGMVD
Ga0208342_101108	Ga0208342_1011082	F049872	MTVSNDAIREIAKALRHHVDAATLEKIVNELLDVPGNRSFRDVIEALARELMRS
Ga0208342_101114	Ga0208342_1011142	F009487	MTHFPQPHPSRRAARVQLGDSVLAAIRLEDGRRTKAKLQTISVTGGLLRLQHSLGAGDFVEVAFQTQA
Ga0208342_101183	Ga0208342_1011832	F017016	MSDKVVTQMTDPEYTVEFDGKETYVMRNGVKLAMRHDDRWVSIEPGITVRDIVENGRHGIEVRITVH
Ga0208342_101291	Ga0208342_1012911	F005125	AARAKPKPAPVKNAARKVKQPDAVVEVIERPAPGVIAVTEVEETEVRKAS
Ga0208342_101344	Ga0208342_1013441	F037856	MNSPLIVSILLISAVPEYAQAQQPDIAKLKADAQKVV
Ga0208342_101455	Ga0208342_1014553	F052100	MKDLGNTIYAFGCVAAATVFGIGIADYWFGHHQMTAFLSWAVLATIPWLVGRASLFVLAR
Ga0208342_101507	Ga0208342_1015071	F086254	MKERIKNALAEVPRATASTVHYLYLARIPFLGWVTLFALPLLAITVGRPLVLAAYDLASSGEAFFVGI
Ga0208342_101518	Ga0208342_1015181	F078274	MPPALRSYEPHDFATLYKLDQACFPAGISYSKTTL
Ga0208342_101544	Ga0208342_1015442	F105942	WGADITLTRHVSFRAQADYLYTHFSSANQNSLRLQSGIVWRFGR
Ga0208342_101551	Ga0208342_1015512	F045269	LVAYNVGLCRMANGSLDAPYEGVSIEAANIAEALQKAKKWAASVEVADNSWLQILLDGRSVRSLKPGSF
Ga0208342_101700	Ga0208342_1017001	F000702	MRKVIQGYAKDKNLNLTLVGAIPVPHSKHKRSPVARQDKRYLVRQGATIFKKETNR
Ga0208342_101827	Ga0208342_1018271	F000436	MTSLPLVLDDHEPIGIILRAGRQMLRPAKIWAYCWFTDEADSSEGGDHTHRHLPAHLD
Ga0208342_101931	Ga0208342_1019311	F014908	NLRLAAEPQSDLLFYRRLRRLLALLTDGQAAVIAPPHLRSRIARPPLLLESVERRPFIVDYAENDEMRVARPNRLSEIIAVQGIPAETWIRDSVLPETSGATPVDRWLRAVAWMLEGEKGTSLHLLVRLPGGEPRGLSVTRSLSLNDRWPLDPPPFATDTLPGGIAVVHIASFADADAVRQLDLAFPDFGRVQAMVLDLRRAAAGKTEFAY
Ga0208342_102035	Ga0208342_1020351	F003566	MAAQGSAPRATLDLKVKVWGMGANNQPFFQNAMAQNISATGACIYGIEPELKVGDVIGVQYEGKKARCKVIWVVDAGALKKTQAGVQLVQDQDCPWAAALPAEMKVEERTIIRQDNRRKFARHKISFPLELRDERVNTPLRVNA
Ga0208342_102139	Ga0208342_1021391	F103694	YSNAARTDQEKKNDRELDRTYESTIKGRPDAKKNTDPWADVRPNPPAAAKNKQ
Ga0208342_102163	Ga0208342_1021631	F065015	QFPREEPGQTIRFWLQIVGWALQSAWTFFRRFPKWVQIGVYIWLAIALMSKGCTPSDKHSDRSARKDAEMLKELPYDRSLGSPTDTDLGSRIAREVTAEVGERLGAGRPLLAIPFSAPSDDPAAQKLADSTFAQVYGRVELSHHGHVGLTKEPLSVPDLSAAVERGRSLHSRYVLYGAVDERAQNLTVKMVTVADGSVLWSQSYS
Ga0208342_102207	Ga0208342_1022072	F038187	TTPGKYDQGELLLSHDGALIAAAPLDAVLTQGTGGLVAVANLPSGTADALYYATVLAWKSTDSGSSVQRQWYPQAIDLRTSTSASITLPVN
Ga0208342_102429	Ga0208342_1024292	F036802	KAIEDFYASAVVPQAKARGQEPPTLDAAHDAIQEALVQRGINEQADKWLKESRARLHVEILLDRGAK
Ga0208342_102431	Ga0208342_1024311	F005064	TSACLIDAVLANNGNPAGSGKSGYSFTTGAGTVGSGVIVGYTVLAAPLILNETGIRAFCAEQDAVVRVDPAGVCSNTEAGILNFNPLNQ
Ga0208342_102779	Ga0208342_1027791	F015921	VPKKPTQWEVYRPIKGSPGAFIGVVEAPDETSALKTAIEEFGIVNPEYQKRLFVRRVPDDDD
Ga0208342_102779	Ga0208342_1027792	F099805	AKAYGMLRHQLSQASLLPVRNQIKTAATPRVGPNANMAPTSLDIPLLTFPLKALIDRQSFSFSRPRGTSPADLPVLLKDELSRWVERVFFQFRTLEVLLGCA
Ga0208342_102857	Ga0208342_1028572	F014287	MSELPEIFDPAECARFLRELGAANSPILPIGEAALALASFERPRVHLGRYRQHLASL
Ga0208342_103070	Ga0208342_1030701	F088985	ITVHGGDLRFDLDAGGTLDRPLYVGNLDWQTMQFTSKPYMPLPVRLSAKFTVWRDGFTLEQGMLGAGHSHLDMQAEMNNFSNPQWSFRYRGWVQLLDFRETLREPTVPTGRVDLRGEGRFAGDQFKGSGSYSGQNIALPYDVFHATGLTSTGSYQIDNRGLEIPDFYAGVSGGKVTGRVTMRFDGA
Ga0208342_103202	Ga0208342_1032022	F030255	MLAMATAVMPMMAQTSLSIYSDGRVVVRRSLAQPLEKGRNTLSLKLDALDPATLFSPDTAVALVSAVLRPATDQGTALQRAVGQTLAFVRVR
Ga0208342_103217	Ga0208342_1032171	F045330	GRHLGVRGFFLEAQQSLDFEELAHRLTAFGLRTFNEFGLGGRNSTVAGVGLSVDDFVSAVLVEYMEGRLQHRASRGDLFSLLATAMRNDIIDSLRKAAHAHEESRSPLPAQRDADAAPLSLDELPGSAIDFAASIDEERYGERARTAFAGEPELAEVVRAVLELNLYKPREIAAELGITAAEVQ
Ga0208342_103440	Ga0208342_1034402	F003683	MNTLPKKREPGESPEVNKIPTWRELADRFRDLMKDFLKEGKELERDIEPKLLPALKRLKLEIEKLIGRLEERSRPPKSQG
Ga0208342_103471	Ga0208342_1034711	F057694	MANHAYLRVWTRDFSLEKMIPEFVRFLATAPLSPSHDTFDELIVQAVDPGETPIAEWDLRPSQVGAAEVAAMAAQH
Ga0208342_103526	Ga0208342_1035261	F016179	PLDEVSPLYGKTWREIGLDAFANHRSQGIAVFLGSPFLRRPIALKREDGGELNPAILAQPLGPLDEDYEEANLGVDPLMRAVDSALVEARDAALRLDWKTATSSLAEAGRKLNEVPKPNPSGNNPEPLLSLARSTARKREKVEEGLELAAGLRVEATADRSEIVPGETFTVRVESRHRE
Ga0208342_103568	Ga0208342_1035682	F097931	MSSRPRQFRQSFLLTGALVALGLVTAFALLSSRSATRVVQQQANARGQDVASHVASLVSLYLRERHQEAEALARSPAVVRAAVDASQQAVRQRLTQLDIPTLERMFNQ
Ga0208342_103605	Ga0208342_1036051	F003316	MLRRITVPCILLLLLGTIDHGNAASTLRMTCSGSLTNTRADGVTLGECDLNFLPVKAMTEIENVCGIPGTADTPAENQCRIRAVVVPDPSSAADHRKLYRVLELW
Ga0208342_103743	Ga0208342_1037431	F035448	FRAAAPYRLLSAGDLVIAVPQPNHSNLPIVLRRGTDGMWYVDEAKAWAYFHRFEDDVNFFVKYSDNPFIGDLRALNLPHMERAIYDGHVGTPAVVPYPSSLSRAIEAIEAKTGTVPQDAANYAALGDIYLFEANWISKAIAAYERASALAPEEPSYHWRLMDLYMNASRADKMLAE
Ga0208342_103747	Ga0208342_1037471	F000136	MAKAKLRILYGEGDGDVLEKQAAAFEKAGHTVQKAEGRKKVEEALTKGTFDLVILGSELSRNDRHHLPYMVKKANAETSVLVMHADGSRHPYVDACVDTGSSMESVLNRIESMKIAGMMPQAA
Ga0208342_103963	Ga0208342_1039631	F001261	HTRCVVASSCPDEGLPANESGDHRAGLPFRSGGNSHPAHTEARAELRDRETYYAELRFAVHCQSRSIPAPRAALDDEESSGRTHSASAKSAQDGSARDHGGTEGESWDEMIARFDDTWT
Ga0208342_104048	Ga0208342_1040481	F026678	AQSRLELLQAVSQGVNDLIQFVQTAGSSQVNTATLDLTIGDLAQSIPELSSPATPFSKLPGQDADSRTSNSWRETGLLGLASEVSALNRKLRVVDEKIRLTDSLSLSLKNMRTPMSGFITRVLQRAATSNLETSNVSSLREQKSQLNALTFELKAFSPAIVALDKQKALLEEY
Ga0208342_104101	Ga0208342_1041011	F030543	MIPGEHSEAPIVAANPFTADDVVAILRERGWLAGEPWAEQRSWSERAASMLGGHAGDRAALAELLGLVFQYDARGIISKVESHVVLSRYAAREVLRRVALLLLD
Ga0208342_104166	Ga0208342_1041662	F076382	VRLHYNKAGRRHLFAHARAYSRTLYEGSRYGAHYAAQIKCFGSGAPAKFDPRPNELQSFNLPKSLEAEG
Ga0208342_104210	Ga0208342_1042101	F009028	MSRKLAVIFLTMLVLVGAMGLRTVVAAHSDGSVIMASGG
Ga0208342_104220	Ga0208342_1042201	F004492	GGTEEDARETKSGVENPAYAHGIVVKMGAQQEFSFFDHFEELLFDRIGTPPRNSAANVEQIRQTTNDRIDNTVFEMNKFVVDKNPMVGLAWRNIHDAVQAKFKDVPEPARQKQIEDLTKQTYYVYVFLDLYARMDDLRSRGSMSPNDDMIVQWKRSWLPNLMRSELGRWML
Ga0208342_104286	Ga0208342_1042861	F000098	MRIYIIGNDGITLCREAPATVNDGEIAVASNEELHAAPLSAKRLLALWNAVPGVEKRKKVGDRDALIDQLW
Ga0208342_104405	Ga0208342_1044051	F089291	MITAAEYRAWAEESLEWARIATTESSRAAYIRWAETWLELASRVERLTALIEDSSKEPTPTAEWPRNRIEMRMQKRRRSSARFDQLAFDFAKI
Ga0208342_104413	Ga0208342_1044131	F056875	ALLTESVAEYQAEADIRDYVWTRKAVLPHAPAAKVADFAAKRRQSEAVKPQGQSPA
Ga0208342_104427	Ga0208342_1044271	F005565	MPSPDKIPLSFNRDRAVRQLDARLEELLEKLRKNR
Ga0208342_104476	Ga0208342_1044761	F065016	IGVNIDNSYDFVSLCNLHNGVFWDEIGNGAYPSAIDSWVLNHGIALVVNQMDALVVHDFYAFSRYAGILLTDSPNTAEPGLRTVWGTGSNIDLENVQFGVIATATNYPGYEFTNVVIGAAPGLGQAAVQLRSGGTNPPDVVINGGAVQGTWSLGAFPAPQAGTLTVVN
Ga0208342_104534	Ga0208342_1045341	F045894	MKLIFVAAALSCSPLAIAEDKAAYPTENVAQFVVEKLDVTSLPSAFRPKKEKAKKTFAEYGFTAKKLDENDAIIE
Ga0208342_104534	Ga0208342_1045342	F030709	LVMGCISSVLIWLVWFIHRETRGKQGNVLPGYRLPIEAVAAVFVAVTGHLGGFLSGVNGP
Ga0208342_104546	Ga0208342_1045461	F013441	LAKARAEAFMKDVAEHIYIVNAEGDKLVDVGPNGEKIVSETVRMLSQLPSLGAPRLVTLRYSDIGGTEEDARERKSGLRNPAYVHGIVVKMGAQQDFSFFDHFEELLFDRIGTPPRNSAANVEQIRQSTQERIQDTIFEMNKFVVDKNPMVGLAWKDISDAVQAKFK