3300026683: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN352 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026683
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054365 | Ga0208210
• Sample Name: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN352 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8592918
• Sequencing Scaffolds: 14
• Novel Protein Genes: 16
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → grassland soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Chapel Hill, North Carolina, USA
• Coordinates
  • Lat. (^o): 35.913
  • Long. (^o): -79.056
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F000792	Metagenome / Metatranscriptome	890	Y
F005858	Metagenome / Metatranscriptome	388	Y
F013809	Metagenome / Metatranscriptome	268	Y
F014775	Metagenome / Metatranscriptome	260	Y
F022734	Metagenome / Metatranscriptome	213	Y
F028105	Metagenome	192	Y
F037903	Metagenome / Metatranscriptome	167	Y
F051427	Metagenome / Metatranscriptome	144	Y
F053584	Metagenome / Metatranscriptome	141	Y
F062048	Metagenome / Metatranscriptome	131	N
F062982	Metagenome	130	Y
F066987	Metagenome / Metatranscriptome	126	Y
F074109	Metagenome / Metatranscriptome	120	N
F095944	Metagenome / Metatranscriptome	105	Y
F097573	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208210_100070	All Organisms → cellular organisms → Bacteria	1237
Ga0208210_100113	All Organisms → cellular organisms → Bacteria → Acidobacteria	1029
Ga0208210_100193	All Organisms → cellular organisms → Bacteria	878
Ga0208210_100213	All Organisms → cellular organisms → Bacteria	838
Ga0208210_100313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720
Ga0208210_100470	All Organisms → cellular organisms → Bacteria	644
Ga0208210_100562	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616
Ga0208210_100662	All Organisms → cellular organisms → Bacteria	586
Ga0208210_100686	Not Available	578
Ga0208210_100766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	560
Ga0208210_100821	Not Available	550
Ga0208210_100853	Not Available	543
Ga0208210_100908	All Organisms → cellular organisms → Bacteria	534
Ga0208210_100979	Not Available	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208210_100070	Ga0208210_1000702	F028105	LLGGGFNGSTQHLLILLEKEVCDGGDCTNMVHAAAEG
Ga0208210_100113	Ga0208210_1001132	F014775	MLDLGIERIGELAIVECIGRIVRSESAFDLRRAVTSLEHARIIVLDLSEVSALEGGGLGMMIFLERWAHDHQIQFKLFNPRKSVRDRLELVRSIRAFDIIPLQEMMALLGNADSHFALAA
Ga0208210_100193	Ga0208210_1001932	F051427	MKNNAIPMGVRTRIIYGAMAIMTIILCIGENAMAQTISTAVVKNIVIVHGGLVDGSGWQ
Ga0208210_100213	Ga0208210_1002132	F013809	IVRREKALDFSGCNSRPGTGSLHPVAIEAAVAVTKLSELSMERVARRPRERAGHNVSER
Ga0208210_100313	Ga0208210_1003131	F062982	LTGKEQSYDVLTEHSVQRPVFTQPKTWEKPVTVSANGAANVEFVLSNK
Ga0208210_100470	Ga0208210_1004701	F095944	MSREGGSWAQEVTGSLAAVKNLRVKVDMGSVVVRGGQQQGINYVFHTRFGNSSEQEARKQFEQYKVTAYVKGDTAWITGDWQGGHHPRHFSGEFSVMVPREMALVKLETEGGNVDATSLAGRVEASTGGG
Ga0208210_100562	Ga0208210_1005621	F022734	KLVFLFLCAIVIGLAPAWAQTPGCEVPKGMTKDQKLPCIRTASILLDQPTLTPEQLANGPDFDSANPEKSRFGYFTGKDTISCYFRPHYAFVAVPGDSMKFQCWHMTSDGAFYGKKGESIRVDDVKVVIEKDKSGERSASLYARNDDKNEHEIKADRFKIKYLKPPYPDHNPRFNEVFTTEAASRIMWVLGFPSDHVYPAAAVSC
Ga0208210_100585	Ga0208210_1005851	F037903	MIHTRLPVLGAIALMIFNCGVAVAEPNQTSADYVMPGCRDAASLIAFSDVGESEEEAYRMGLCAGIV
Ga0208210_100662	Ga0208210_1006621	F000249	SRGVWSEGVWHEAGPEDRMFFPKDMIYAWAQFDLSPPHNEIDPNQCAGNSYVDGRANAPCNMFARYMLSGILEVRPFGRGPLRRFMLWGAPAFLFGKNVPKTLYTWSPDAIGIEHSWGLGIYLTKGFEFRVTQHFLFDRLGARDKNLGVADLGTNGPWGRYMSLGVRKTFGTRRW
Ga0208210_100686	Ga0208210_1006862	F000792	MREHVLLFCLLGLLLTAAIMLMIAPGSVTWALSFIQ
Ga0208210_100766	Ga0208210_1007662	F097573	MDSPCDDMQSLPEGIDALRALVLTTMSERDALALERDTLQ
Ga0208210_100821	Ga0208210_1008211	F074109	GQRHRMDRLGTWEVPFTSTCERTGRSGRRLNNDPGPEGPSDLPGAQVARHETKRIARTPEAKQISNRICVAGSRSTSIVPVTSGNRTYRDPIEESGVPCGENR
Ga0208210_100853	Ga0208210_1008531	F062048	VSSMPNVTNFQPVAWWWTRRRIGRVLRERYNVLKDLPPKLLTLIGKLDAIEGKYLLRYAPPVGRRSVEESD
Ga0208210_100853	Ga0208210_1008532	F005858	MSHQYKAGDVVTVFQISPSNELVIEGKATIRKRVAEVDEQYRVEFANKPGVTCQRFVDSWGQDDPEKYVKDFNRRF
Ga0208210_100908	Ga0208210_1009081	F066987	MAFTKAQIGIAVGSGALLVFGFVGYLWWLSNQGPVLARSEEK
Ga0208210_100979	Ga0208210_1009791	F053584	AERYIMVKTYQSGQQVRSLLSEAGLVDIPTDEVSERVKEAKKAVMDRLGELLESTTDIEERDSAAYSLATLKKLETALQRKGTPPAD