Sample 3300026666

Overview

Basic Information
IMG/M Taxon OID	3300026666 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053063 \| Gp0054370 \| Ga0208574
Sample Name	Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN351 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	7836755
Sequencing Scaffolds	21
Novel Protein Genes	21
Associated Families	21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium → Roseimicrobium gellanilyticum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → land → grassland soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Chapel Hill, North Carolina, USA
Coordinates	Lat. (^o)	35.913	Long. (^o)	-79.056	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F001373	Metagenome / Metatranscriptome	712	Y
F001869	Metagenome / Metatranscriptome	624	Y
F003877	Metagenome / Metatranscriptome	464	Y
F003894	Metagenome / Metatranscriptome	463	Y
F004468	Metagenome / Metatranscriptome	437	Y
F005308	Metagenome / Metatranscriptome	405	Y
F009626	Metagenome / Metatranscriptome	315	Y
F013770	Metagenome / Metatranscriptome	268	Y
F014301	Metagenome / Metatranscriptome	264	N
F018064	Metagenome	237	Y
F025553	Metagenome / Metatranscriptome	201	Y
F031222	Metagenome	183	Y
F039358	Metagenome / Metatranscriptome	164	Y
F045919	Metagenome	152	Y
F059390	Metagenome / Metatranscriptome	134	Y
F068277	Metagenome	125	Y
F069892	Metagenome	123	Y
F077695	Metagenome	117	Y
F101572	Metagenome / Metatranscriptome	102	Y
F104871	Metagenome / Metatranscriptome	100	Y

Family

Category

Number of Sequences

3D Structure?

F000268

Metagenome / Metatranscriptome

1411

F001373

Metagenome / Metatranscriptome

712

F001869

Metagenome / Metatranscriptome

624

F003877

Metagenome / Metatranscriptome

464

F003894

Metagenome / Metatranscriptome

463

F004468

Metagenome / Metatranscriptome

437

F005308

Metagenome / Metatranscriptome

405

F009626

Metagenome / Metatranscriptome

315

F013770

Metagenome / Metatranscriptome

268

F014301

Metagenome / Metatranscriptome

264

F018064

Metagenome

237

F025553

Metagenome / Metatranscriptome

201

F031222

Metagenome

183

F039358

Metagenome / Metatranscriptome

164

F045919

Metagenome

152

F059390

Metagenome / Metatranscriptome

134

F068277

Metagenome

125

F069892

Metagenome

123

F077695

Metagenome

117

F101572

Metagenome / Metatranscriptome

102

F104871

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208574_100007	All Organisms → cellular organisms → Bacteria → Proteobacteria	2665	Open in IMG/M
Ga0208574_100027	All Organisms → cellular organisms → Bacteria	1687	Open in IMG/M
Ga0208574_100108	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
Ga0208574_100112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1169	Open in IMG/M
Ga0208574_100173	All Organisms → Viruses → Predicted Viral	1030	Open in IMG/M
Ga0208574_100421	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
Ga0208574_100578	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	705	Open in IMG/M
Ga0208574_100593	Not Available	698	Open in IMG/M
Ga0208574_100617	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
Ga0208574_100636	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M
Ga0208574_100642	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
Ga0208574_100713	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	665	Open in IMG/M
Ga0208574_100813	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
Ga0208574_100818	Not Available	639	Open in IMG/M
Ga0208574_100876	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
Ga0208574_101097	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
Ga0208574_101135	Not Available	584	Open in IMG/M
Ga0208574_101136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
Ga0208574_101316	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	561	Open in IMG/M
Ga0208574_101479	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
Ga0208574_101744	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium → Roseimicrobium gellanilyticum	517	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208574_100007

All Organisms → cellular organisms → Bacteria → Proteobacteria

2665

Open in IMG/M

Ga0208574_100027

All Organisms → cellular organisms → Bacteria

1687

Open in IMG/M

Ga0208574_100108

All Organisms → cellular organisms → Bacteria

1176

Open in IMG/M

Ga0208574_100112

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

1169

Open in IMG/M

Ga0208574_100173

All Organisms → Viruses → Predicted Viral

1030

Open in IMG/M

Ga0208574_100421

All Organisms → cellular organisms → Bacteria

779

Open in IMG/M

Ga0208574_100578

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus

705

Open in IMG/M

Ga0208574_100593

Not Available

698

Open in IMG/M

Ga0208574_100617

All Organisms → cellular organisms → Bacteria

691

Open in IMG/M

Ga0208574_100636

All Organisms → cellular organisms → Bacteria → Acidobacteria

685

Open in IMG/M

Ga0208574_100642

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

683

Open in IMG/M

Ga0208574_100713

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

665

Open in IMG/M

Ga0208574_100813

All Organisms → cellular organisms → Bacteria

640

Open in IMG/M

Ga0208574_100818

Not Available

639

Open in IMG/M

Ga0208574_100876

All Organisms → cellular organisms → Bacteria

628

Open in IMG/M

Ga0208574_101097

All Organisms → cellular organisms → Bacteria

589

Open in IMG/M

Ga0208574_101135

Not Available

584

Open in IMG/M

Ga0208574_101136

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

584

Open in IMG/M

Ga0208574_101316

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

561

Open in IMG/M

Ga0208574_101479

All Organisms → cellular organisms → Bacteria → Proteobacteria

543

Open in IMG/M

Ga0208574_101744

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium → Roseimicrobium gellanilyticum

517

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208574_100007	Ga0208574_1000073	F003877	VKEGLNKELAAGCLVTSALGRVSRAQLVHTTARNCAGDEGGPFGFGDQVADSKPPQAAAVKSRGGERCGKVGTMIPAGMVERGERKRTAAEASKFS
Ga0208574_100027	Ga0208574_1000271	F025553	MKPVSWDKQLGLASPLETAASQSGKIKSPSNKEAGLDVSHHALVSREGRGE
Ga0208574_100108	Ga0208574_1001081	F005308	MNGKDESLPLGNPLVFEHSTPTGATEVAQRLVAFPFTPPDVKLKQKEPLSSSNDWFTKHDKDKIDQLGSLDFYASSGPESVGVVPKLHNTSAGIEIYQLPPPLTKETFEKTEGPYRSGVTKKYSNKRSGEKIAKFKAGTMAQSGLASFHMSRLLGHLVEVPPATYRTMGLQEFQKVGDQARTTGHPSCTQAWADLRAMANSGSSKVVLPDGKTIYGSLAQNPRGEDSSPEDYWTVGAIRGHSFYRVLSSKTPVANILNLNDPKCLQDLALAQDMIRGVILDSIFRQVDRLGNISVDQLQHYVDRDGKVKWDDKLSDKDKADAVSPIFALKRIMYKDNDDGMMWGMNSISVTP
Ga0208574_100112	Ga0208574_1001121	F069892	PRGSKNPGQYLTKEQQKTCLDSAAAELIREITQQRPLN
Ga0208574_100173	Ga0208574_1001732	F045919	EFTQPVFDPWVAMPGQLYDWTCSACSLEWTKRAVGLIAPPEDIYGSRETTVYEIGYPDNINATYGLMDGSGAQLARVLDGYGQDSLQGYGLSFDDVYDLAQDGTPMMMSGAAWYHWVAVRGVQGNTLWIANSAPGYKGVWDNLSREDFNRLGGFSVVWLT
Ga0208574_100421	Ga0208574_1004211	F000268	MRVVAVMLLLSAGIAAEAVSYSFVSKASGRLGGPIRFEFYRDSIPRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLISGRVYAGFATDGHGGSSKVTFGFDKDGTMIFLDDVLD
Ga0208574_100578	Ga0208574_1005783	F004468	MTTGRAATVFDFANYESATISKKALCELQDREAQKRCARDLQESAAQTAPGLTTKVM
Ga0208574_100593	Ga0208574_1005932	F014301	VQLTLALLELPAPPAMPGVQLDPEARAKAIEILARMIAQTLPTSTQPQNEVADE
Ga0208574_100617	Ga0208574_1006172	F101572	LNAIEEPLDAVTQGIERFVDGMLYLSAGDAGDHGPTPALLDVLANGFAIVALVAKHLFGIAVDLVHQRRNGGDIVGLAGRDHDADGQALGIGACIDLGREAAARTAERVTLGPPFPPAAQ
Ga0208574_100636	Ga0208574_1006361	F001869	MRAWVRWSAWLCLSLMLWTVAAESTHNHPNQTESASCLICVAAHSASPAVSTGHAAPFFAAVGTLQEHAIVAN
Ga0208574_100642	Ga0208574_1006421	F068277	MHEHVAPAVYFLEVHLLYASIVCLAAWLLTSLWKGDATWKYWIWVATSLNFIVPLGGFFNRFGASRVPWATQLGGLDDVGIGISRNLTVGAVLLGVWLSGTVFMLARLLLRLRRSRRDAQLAVVQSSAQ
Ga0208574_100713	Ga0208574_1007132	F018064	AANVEQIRQTTQERIQDTIFEMNKFVVDKNPMVGLAWKDISDAVQAKFKDVPEPARTKQIEDLTRQTYYVYIFLSLYARMDDLRSRGILSPNDEMILGWKRSWLPNLMTSEIGRWMLENNLMEYYSEPMIKDLREAAGATGRSPTPPASTP
Ga0208574_100813	Ga0208574_1008131	F031222	NIVPGRLPRGPAFAEFLNKYATQTGPTILHPEERSFRKGQSGGGHAIEGKD
Ga0208574_100818	Ga0208574_1008182	F077695	VSDGFSVGPGVAQAIADNGDEARSDERFIILDEGHKVSLTLARDGQYWWYEEDNRVNRVPFR
Ga0208574_100876	Ga0208574_1008761	F009626	MKSNQIQCRFSFRAIWNRKLQDLGPIALLAVVVWLCSCDVNLFGPESREIAGGYRLKRANNPNEFALTIPNEDGGLIIDEIGWREPLIFARAFGSKYWDVINTARAQHIRVSDLQRKSDAISQSIQIKSAEIAWKELNRHRRLW
Ga0208574_101097	Ga0208574_1010972	F001373	VVSQIESQHADANEELLLELKSKNTTRSIKDFSPEGIRLESNLEGEAKGVYNATFYATITMLVKPDRTIDYEVRQIHTTNDGDTVLVYYKGNSIVESPTRNKFVGETTFQTSSKKLAWLNGMKARHEGEYNPVAGENDFRVYGKR
Ga0208574_101135	Ga0208574_1011352	F059390	MHVATVGSYPITIGWLIALVVLLLAILGLIGVVPTSPVVVFGLIGALAVARLA
Ga0208574_101136	Ga0208574_1011362	F003894	ESLANSFHGVHVAKSVDELRNAAAKHQPFAIILDLETATLGDIESLKRDFQHTRIVCNHRVADEEMWANTLNVGAYDCCPTSDMRAIVLAAAPRLARANHVAA
Ga0208574_101316	Ga0208574_1013162	F013770	MKKTKPANATWIWAIAAFFMFANAPHGFAKPQKKPAAASQENADPLVNAAMKNMETGVWSVNGTVTAKKTIKLHGLLAGEDFDLTMEPGMKPDTPLRGIVIKD
Ga0208574_101479	Ga0208574_1014791	F104871	MIASISEAKLRGLAERLQFKVEQHGDRFTLTRTADVSRPVVEEGLTLSEAEELLERWK
Ga0208574_101744	Ga0208574_1017441	F039358	LSAASTSGAWGISGAGEIPVDQPENFRWNGHVALDGELVYASGQTNIALQKPTFSVRVEEQAVTISDLKAGLWDGSLDVAKLQAHLPSKEKKLRIETQLKLDGVRLQSIINILGEARKQPGVVPLDWKGAWRISGAGEIPMDHPENFRWNGDMALDGDLIYASGQTNIALQK

Scaffold ID

Protein ID

Family

Sequence

Ga0208574_100007

Ga0208574_1000073

F003877

VKEGLNKELAAGCLVTSALGRVSRAQLVHTTARNCAGDEGGPFGFGDQVADSKPPQAAAVKSRGGERCGKVGTMIPAGMVERGERKRTAAEASKFS

Ga0208574_100027

Ga0208574_1000271

F025553

MKPVSWDKQLGLASPLETAASQSGKIKSPSNKEAGLDVSHHALVSREGRGE

Ga0208574_100108

Ga0208574_1001081

F005308

MNGKDESLPLGNPLVFEHSTPTGATEVAQRLVAFPFTPPDVKLKQKEPLSSSNDWFTKHDKDKIDQLGSLDFYASSGPESVGVVPKLHNTSAGIEIYQLPPPLTKETFEKTEGPYRSGVTKKYSNKRSGEKIAKFKAGTMAQSGLASFHMSRLLGHLVEVPPATYRTMGLQEFQKVGDQARTTGHPSCTQAWADLRAMANSGSSKVVLPDGKTIYGSLAQNPRGEDSSPEDYWTVGAIRGHSFYRVLSSKTPVANILNLNDPKCLQDLALAQDMIRGVILDSIFRQVDRLGNISVDQLQHYVDRDGKVKWDDKLSDKDKADAVSPIFALKRIMYKDNDDGMMWGMNSISVTP

Ga0208574_100112

Ga0208574_1001121

F069892

PRGSKNPGQYLTKEQQKTCLDSAAAELIREITQQRPLN

Ga0208574_100173

Ga0208574_1001732

F045919

EFTQPVFDPWVAMPGQLYDWTCSACSLEWTKRAVGLIAPPEDIYGSRETTVYEIGYPDNINATYGLMDGSGAQLARVLDGYGQDSLQGYGLSFDDVYDLAQDGTPMMMSGAAWYHWVAVRGVQGNTLWIANSAPGYKGVWDNLSREDFNRLGGFSVVWLT

Ga0208574_100421

Ga0208574_1004211

F000268

MRVVAVMLLLSAGIAAEAVSYSFVSKASGRLGGPIRFEFYRDSIPRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLISGRVYAGFATDGHGGSSKVTFGFDKDGTMIFLDDVLD

Ga0208574_100578

Ga0208574_1005783

F004468

MTTGRAATVFDFANYESATISKKALCELQDREAQKRCARDLQESAAQTAPGLTTKVM

Ga0208574_100593

Ga0208574_1005932

F014301

VQLTLALLELPAPPAMPGVQLDPEARAKAIEILARMIAQTLPTSTQPQNEVADE

Ga0208574_100617

Ga0208574_1006172

F101572

LNAIEEPLDAVTQGIERFVDGMLYLSAGDAGDHGPTPALLDVLANGFAIVALVAKHLFGIAVDLVHQRRNGGDIVGLAGRDHDADGQALGIGACIDLGREAAARTAERVTLGPPFPPAAQ

Ga0208574_100636

Ga0208574_1006361

F001869

MRAWVRWSAWLCLSLMLWTVAAESTHNHPNQTESASCLICVAAHSASPAVSTGHAAPFFAAVGTLQEHAIVAN

Ga0208574_100642

Ga0208574_1006421

F068277

MHEHVAPAVYFLEVHLLYASIVCLAAWLLTSLWKGDATWKYWIWVATSLNFIVPLGGFFNRFGASRVPWATQLGGLDDVGIGISRNLTVGAVLLGVWLSGTVFMLARLLLRLRRSRRDAQLAVVQSSAQ

Ga0208574_100713

Ga0208574_1007132

F018064

AANVEQIRQTTQERIQDTIFEMNKFVVDKNPMVGLAWKDISDAVQAKFKDVPEPARTKQIEDLTRQTYYVYIFLSLYARMDDLRSRGILSPNDEMILGWKRSWLPNLMTSEIGRWMLENNLMEYYSEPMIKDLREAAGATGRSPTPPASTP

Ga0208574_100813

Ga0208574_1008131

F031222

NIVPGRLPRGPAFAEFLNKYATQTGPTILHPEERSFRKGQSGGGHAIEGKD

Ga0208574_100818

Ga0208574_1008182

F077695

VSDGFSVGPGVAQAIADNGDEARSDERFIILDEGHKVSLTLARDGQYWWYEEDNRVNRVPFR

Ga0208574_100876

Ga0208574_1008761

F009626

MKSNQIQCRFSFRAIWNRKLQDLGPIALLAVVVWLCSCDVNLFGPESREIAGGYRLKRANNPNEFALTIPNEDGGLIIDEIGWREPLIFARAFGSKYWDVINTARAQHIRVSDLQRKSDAISQSIQIKSAEIAWKELNRHRRLW

Ga0208574_101097

Ga0208574_1010972

F001373

VVSQIESQHADANEELLLELKSKNTTRSIKDFSPEGIRLESNLEGEAKGVYNATFYATITMLVKPDRTIDYEVRQIHTTNDGDTVLVYYKGNSIVESPTRNKFVGETTFQTSSKKLAWLNGMKARHEGEYNPVAGENDFRVYGKR

Ga0208574_101135

Ga0208574_1011352

F059390

MHVATVGSYPITIGWLIALVVLLLAILGLIGVVPTSPVVVFGLIGALAVARLA

Ga0208574_101136

Ga0208574_1011362

F003894

ESLANSFHGVHVAKSVDELRNAAAKHQPFAIILDLETATLGDIESLKRDFQHTRIVCNHRVADEEMWANTLNVGAYDCCPTSDMRAIVLAAAPRLARANHVAA

Ga0208574_101316

Ga0208574_1013162

F013770

MKKTKPANATWIWAIAAFFMFANAPHGFAKPQKKPAAASQENADPLVNAAMKNMETGVWSVNGTVTAKKTIKLHGLLAGEDFDLTMEPGMKPDTPLRGIVIKD

Ga0208574_101479

Ga0208574_1014791

F104871

MIASISEAKLRGLAERLQFKVEQHGDRFTLTRTADVSRPVVEEGLTLSEAEELLERWK

Ga0208574_101744

Ga0208574_1017441

F039358

LSAASTSGAWGISGAGEIPVDQPENFRWNGHVALDGELVYASGQTNIALQKPTFSVRVEEQAVTISDLKAGLWDGSLDVAKLQAHLPSKEKKLRIETQLKLDGVRLQSIINILGEARKQPGVVPLDWKGAWRISGAGEIPMDHPENFRWNGDMALDGDLIYASGQTNIALQK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026666: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN351 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences