Metagenome Family F069892

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069892
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	40 residues
Representative Sequence	LIPRGSKNPEQYLTKEQQKACLDSAAAELIREITQGRSLN
Number of Associated Samples	78
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.19 %
% of genes from short scaffolds (< 2000 bps)	95.12 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.602 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.642 % of family members)
Environment Ontology (ENVO)	Unclassified (54.472 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.163 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.82% β-sheet: 0.00% Coil/Unstructured: 66.18%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF04392	ABC_sub_bind	15.45
PF00856	SET	2.44
PF03401	TctC	1.63
PF02518	HATPase_c	1.63
PF02738	MoCoBD_1	1.63
PF12697	Abhydrolase_6	1.63
PF00857	Isochorismatase	0.81
PF07690	MFS_1	0.81
PF00166	Cpn10	0.81
PF13546	DDE_5	0.81
PF13551	HTH_29	0.81
PF06048	DUF927	0.81
PF00589	Phage_integrase	0.81
PF08327	AHSA1	0.81
PF01751	Toprim	0.81
PF04226	Transgly_assoc	0.81
PF13586	DDE_Tnp_1_2	0.81
PF01522	Polysacc_deac_1	0.81
PF00440	TetR_N	0.81
PF01019	G_glu_transpept	0.81
PF00571	CBS	0.81
PF00850	Hist_deacetyl	0.81
PF01145	Band_7	0.81
PF02604	PhdYeFM_antitox	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	15.45
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.63
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.63
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.81
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.81
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.81
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.81
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.81
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.81
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.81
COG5519	Predicted ATPase domain of Cch-like helicases, DUF927 family	General function prediction only [R]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.60 %
Unclassified	root	N/A	37.40 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.60 %
Unclassified	root	N/A	37.40 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.60 %
Unclassified	root	N/A	37.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.40 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.59 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.40 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.71 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.40 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.38 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	8.13 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.40 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.32 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.50 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.81 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.81 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.81 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.81 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.40 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.32 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.81 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.81 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.81 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.81 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.40 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.32 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2.44 %
Microvirga brassicacearum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga brassicacearum	0.81 %
Bradyrhizobium septentrionale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	0.81 %
Bradyrhizobium icense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	0.81 %
Methylocystis bryophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis bryophila	0.81 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.81 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01CPVQ6	Not Available	507	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10029050	Not Available	1302	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10120949	Not Available	547	Open in IMG/M
3300004633\|Ga0066395_10121544	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300005178\|Ga0066688_10802442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	589	Open in IMG/M
3300005332\|Ga0066388_101934671	Not Available	1054	Open in IMG/M
3300005332\|Ga0066388_102284617	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300005332\|Ga0066388_105659613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300005610\|Ga0070763_10838139	Not Available	545	Open in IMG/M
3300005713\|Ga0066905_100586635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	941	Open in IMG/M
3300005713\|Ga0066905_101491323	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300005713\|Ga0066905_101627745	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300005713\|Ga0066905_101676258	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005764\|Ga0066903_100246921	All Organisms → cellular organisms → Bacteria	2747	Open in IMG/M
3300005764\|Ga0066903_100696587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	1789	Open in IMG/M
3300005764\|Ga0066903_104376876	Not Available	754	Open in IMG/M
3300005764\|Ga0066903_105090463	All Organisms → cellular organisms → Bacteria → Proteobacteria	697	Open in IMG/M
3300005764\|Ga0066903_106734648	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300005764\|Ga0066903_107411682	Not Available	567	Open in IMG/M
3300005764\|Ga0066903_108524991	Not Available	522	Open in IMG/M
3300005764\|Ga0066903_109122623	Not Available	501	Open in IMG/M
3300006047\|Ga0075024_100392168	Not Available	704	Open in IMG/M
3300006796\|Ga0066665_11184327	Not Available	583	Open in IMG/M
3300007258\|Ga0099793_10711921	Not Available	506	Open in IMG/M
3300009143\|Ga0099792_10797485	Not Available	618	Open in IMG/M
3300009148\|Ga0105243_11130114	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300010043\|Ga0126380_10341019	Not Available	1086	Open in IMG/M
3300010046\|Ga0126384_10325597	Not Available	1272	Open in IMG/M
3300010046\|Ga0126384_10595631	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300010046\|Ga0126384_10797672	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300010048\|Ga0126373_12354329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	593	Open in IMG/M
3300010159\|Ga0099796_10328284	Not Available	655	Open in IMG/M
3300010358\|Ga0126370_10594518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	954	Open in IMG/M
3300010379\|Ga0136449_100164778	All Organisms → cellular organisms → Bacteria	4306	Open in IMG/M
3300010398\|Ga0126383_10736583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1066	Open in IMG/M
3300010399\|Ga0134127_13231065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300012200\|Ga0137382_10575556	Not Available	803	Open in IMG/M
3300012202\|Ga0137363_10798068	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300012208\|Ga0137376_11732550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300012351\|Ga0137386_10762949	Not Available	695	Open in IMG/M
3300012354\|Ga0137366_10662602	Not Available	746	Open in IMG/M
3300012948\|Ga0126375_10603899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	838	Open in IMG/M
3300015372\|Ga0132256_101553781	Not Available	772	Open in IMG/M
3300016294\|Ga0182041_10126813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga brassicacearum	1927	Open in IMG/M
3300016294\|Ga0182041_10202197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1583	Open in IMG/M
3300016294\|Ga0182041_10289544	Not Available	1352	Open in IMG/M
3300016294\|Ga0182041_11801860	Not Available	568	Open in IMG/M
3300016294\|Ga0182041_12297259	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300016319\|Ga0182033_11939752	Not Available	536	Open in IMG/M
3300016341\|Ga0182035_10385404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	1174	Open in IMG/M
3300016341\|Ga0182035_11061321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	720	Open in IMG/M
3300016341\|Ga0182035_11271088	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300016341\|Ga0182035_11581073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	591	Open in IMG/M
3300016341\|Ga0182035_11850264	Not Available	547	Open in IMG/M
3300016387\|Ga0182040_10576814	All Organisms → cellular organisms → Bacteria → Proteobacteria	908	Open in IMG/M
3300016387\|Ga0182040_11488097	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300016404\|Ga0182037_11139655	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300016422\|Ga0182039_10827170	All Organisms → cellular organisms → Bacteria → Proteobacteria	823	Open in IMG/M
3300016422\|Ga0182039_11290496	Not Available	661	Open in IMG/M
3300016445\|Ga0182038_10054214	Not Available	2697	Open in IMG/M
3300016445\|Ga0182038_10520880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1017	Open in IMG/M
3300016445\|Ga0182038_11253451	Not Available	662	Open in IMG/M
3300018074\|Ga0184640_10407934	Not Available	610	Open in IMG/M
3300018469\|Ga0190270_10947045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	883	Open in IMG/M
3300021080\|Ga0210382_10247068	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300021405\|Ga0210387_10461201	Not Available	1128	Open in IMG/M
3300021560\|Ga0126371_12250458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	658	Open in IMG/M
3300026666\|Ga0208574_100112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1169	Open in IMG/M
3300027039\|Ga0207855_1028325	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300028536\|Ga0137415_11153038	Not Available	589	Open in IMG/M
3300028787\|Ga0307323_10025647	All Organisms → cellular organisms → Bacteria → Proteobacteria	2035	Open in IMG/M
3300028793\|Ga0307299_10137467	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300028875\|Ga0307289_10277193	Not Available	690	Open in IMG/M
3300028875\|Ga0307289_10491487	Not Available	504	Open in IMG/M
3300031561\|Ga0318528_10240119	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300031561\|Ga0318528_10359634	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300031564\|Ga0318573_10802964	Not Available	505	Open in IMG/M
3300031573\|Ga0310915_10125391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1756	Open in IMG/M
3300031573\|Ga0310915_10547255	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300031720\|Ga0307469_11680606	Not Available	611	Open in IMG/M
3300031723\|Ga0318493_10323821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	835	Open in IMG/M
3300031724\|Ga0318500_10262197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	840	Open in IMG/M
3300031744\|Ga0306918_10271546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1299	Open in IMG/M
3300031744\|Ga0306918_11211803	Not Available	582	Open in IMG/M
3300031747\|Ga0318502_10957442	Not Available	521	Open in IMG/M
3300031764\|Ga0318535_10519607	Not Available	529	Open in IMG/M
3300031765\|Ga0318554_10396230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	784	Open in IMG/M
3300031768\|Ga0318509_10635122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300031771\|Ga0318546_10197485	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300031771\|Ga0318546_10220969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1298	Open in IMG/M
3300031778\|Ga0318498_10105083	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300031780\|Ga0318508_1116878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	747	Open in IMG/M
3300031805\|Ga0318497_10330943	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300031833\|Ga0310917_10347519	Not Available	1006	Open in IMG/M
3300031833\|Ga0310917_10491987	Not Available	834	Open in IMG/M
3300031879\|Ga0306919_10619850	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300031879\|Ga0306919_10887991	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300031879\|Ga0306919_11335195	Not Available	542	Open in IMG/M
3300031879\|Ga0306919_11346917	Not Available	540	Open in IMG/M
3300031896\|Ga0318551_10323408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	870	Open in IMG/M
3300031912\|Ga0306921_10257186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2045	Open in IMG/M
3300031912\|Ga0306921_12533332	Not Available	531	Open in IMG/M
3300031942\|Ga0310916_10157901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1876	Open in IMG/M
3300031942\|Ga0310916_11086125	Not Available	665	Open in IMG/M
3300031942\|Ga0310916_11621902	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031946\|Ga0310910_10327327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1208	Open in IMG/M
3300031946\|Ga0310910_11162413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	599	Open in IMG/M
3300031947\|Ga0310909_10528177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	988	Open in IMG/M
3300031954\|Ga0306926_10766052	Not Available	1166	Open in IMG/M
3300031954\|Ga0306926_11452474	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300031981\|Ga0318531_10167262	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300031981\|Ga0318531_10403612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	618	Open in IMG/M
3300032001\|Ga0306922_10046056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	4498	Open in IMG/M
3300032001\|Ga0306922_11194540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis bryophila	775	Open in IMG/M
3300032001\|Ga0306922_11543855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	662	Open in IMG/M
3300032042\|Ga0318545_10146169	Not Available	839	Open in IMG/M
3300032051\|Ga0318532_10098037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1032	Open in IMG/M
3300032060\|Ga0318505_10328367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	722	Open in IMG/M
3300032094\|Ga0318540_10599949	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300032261\|Ga0306920_102250668	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300032261\|Ga0306920_103913142	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300033289\|Ga0310914_10441694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1177	Open in IMG/M
3300033290\|Ga0318519_10559640	Not Available	692	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.37%
Host-Associated	Host-Associated	1.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.94%
Aquatic	Environmental → Aquatic	2.44%
Plants	Host-Associated → Plants	1.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.94%
Sediment	Environmental → Aquatic → Sediment	1.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.63%
Freshwater	Environmental → Aquatic → Freshwater	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.49%
Loam	Environmental → Terrestrial → Soil → Loam	15.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	57.72%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.32%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.63%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026666	Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN351 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_413720	2035918004	Soil	LAPRGNKNPERYLTKEEQEACLDSAAAELVREITQQRPLN
AF_2010_repII_A001DRAFT_100290502	3300000793	Forest Soil	KLAHRRSKNPEQYLTKEQQKACLDSAAIELIREITQQGPLN*
AF_2010_repII_A001DRAFT_101209492	3300000793	Forest Soil	RCHKLAHRGSKNPEQYLTKEQQKACLDSAAAELIREITQRQSLN*
Ga0066395_101215441	3300004633	Tropical Forest Soil	MIWKWYKNPDQYLTKEQKKSCLDSAAVELIREITQQPSLN*
Ga0066688_108024421	3300005178	Soil	KCHKLAPRGNKNPEQYLTKEQQKACLDSAAAELVREITQQRPLN*
Ga0066388_1019346711	3300005332	Tropical Forest Soil	WLQKCRKLAPRGNKNPEQHLTKEQQKVCLDSAAAELIREIAQGQSLN*
Ga0066388_1022846172	3300005332	Tropical Forest Soil	VPRGSKNPEQYLTKEQQKACLDSAAAELIREITQRQSLN*
Ga0066388_1056596132	3300005332	Tropical Forest Soil	APLGSKNPEQHLTKEQQKACLNSAAAELIREITQQQSLN*
Ga0070763_108381391	3300005610	Soil	HRRSKNPEQYLTKEQQKACLDSATAELIREITQQRSLN*
Ga0066905_1005866352	3300005713	Tropical Forest Soil	KLAHRRSKNPEQYLTKEQQKACLDAAAAELIREITQGRPLN*
Ga0066905_1014913231	3300005713	Tropical Forest Soil	LQKCHKLAPRGSKNPEQHLTKEQQKACLNSAAAELIREIMQRQSLN*
Ga0066905_1016277452	3300005713	Tropical Forest Soil	QKCHKLAPRGSKNPEQHLTKEQQKACLDSAAAELIREITQGQSLN*
Ga0066905_1016762582	3300005713	Tropical Forest Soil	SKNPEQYLTKEQQKACLDSAAAELIREITQRQSLN*
Ga0066903_1002469211	3300005764	Tropical Forest Soil	KWLQKCHKLTPLGSKNPEQHLTKEQQKACLNSAAAELIREVTQQQSLN*
Ga0066903_1006965872	3300005764	Tropical Forest Soil	LGSKNPEQHLTKEQQKACLEMAAAELIREITQGRSLN*
Ga0066903_1043768763	3300005764	Tropical Forest Soil	RRSKNPEQYLTKEQQKACLDSAAIELIREITQQGPLN*
Ga0066903_1050904632	3300005764	Tropical Forest Soil	RCQKLAPRGSKDPEQYLTKEQQKACLDSAALELIREITQRRSLN*
Ga0066903_1067346482	3300005764	Tropical Forest Soil	QKWQRRCHKLVPRGSKNPEQYLTKEQQKACLDSAAAELIQEITQRQTLN*
Ga0066903_1074116822	3300005764	Tropical Forest Soil	CHKLAHRRSKNPEQYLTKEQQKACLDSAAIELIREITQQRPLN*
Ga0066903_1085249911	3300005764	Tropical Forest Soil	HRRSKNPEQHLTKAQQKACLDAAAVELIREITQQGSLN*
Ga0066903_1091226231	3300005764	Tropical Forest Soil	GGNKNAVQYLTKEQQKSCLDSAAAELIREITQQRPLN*
Ga0075024_1003921681	3300006047	Watersheds	KCQKLAPRGIKNPDLHLPKEQQKECLDSAAAELIREITQRRLLN*
Ga0066665_111843272	3300006796	Soil	RGSKNPEQCLNKEQQKACLDSAAAELIREITCGLSLN*
Ga0099793_107119211	3300007258	Vadose Zone Soil	APLGSKNPEQYLTKEQQKACLEMAAAELIREIKQGGSLN*
Ga0099792_107974851	3300009143	Vadose Zone Soil	KNPEQYLTKEQQKACLDSAVAELIREITQGRSLN*
Ga0105243_111301142	3300009148	Miscanthus Rhizosphere	AGSKNPEQHPTKEQQKACLETAAAELIREITQGRSLN*
Ga0126380_103410191	3300010043	Tropical Forest Soil	WLRKCHKLAPRGNKNPEQYLTKEQQKACLDSAAAELIREIAQQRPLN*
Ga0126384_103255971	3300010046	Tropical Forest Soil	RGSKNPEQYLTKEQQKACLDSAVAELIREITQGRSLN*
Ga0126384_105956312	3300010046	Tropical Forest Soil	RGSKNPEQYLTKEQQKACLDSAAAELIREITQQQSLN*
Ga0126384_107976722	3300010046	Tropical Forest Soil	AQKWNQKCRKLAPFGSKNPEQYLTKKQQKACLEMAAADLIREITQGRSLN*
Ga0126373_123543291	3300010048	Tropical Forest Soil	KNPEQYLTKEQQKACLDSAAAELIREITQRQSLN*
Ga0099796_103282842	3300010159	Vadose Zone Soil	APRGTKNPDQHLSKEQQNECLDSATAELIREITQRQLLN*
Ga0126370_105945181	3300010358	Tropical Forest Soil	SKNPEQYLTKEQQKACLDSAAAELIREISQRQSLN*
Ga0136449_1001647781	3300010379	Peatlands Soil	PGNKNPEQYLTKEQQKACLDSAAAELIREITQLQPLN*
Ga0126383_107365833	3300010398	Tropical Forest Soil	RRLAPLGSKNPEQYLTKEQQKACLESAAAELIREITQGRTLN*
Ga0134127_132310651	3300010399	Terrestrial Soil	KNPEQYLTKEQQKACLEMAAAELIREITQGRSLN*
Ga0137382_105755562	3300012200	Vadose Zone Soil	LGSKNPEQYLTKKQQKACLEMAAAELIREITQGRSLN*
Ga0137363_107980681	3300012202	Vadose Zone Soil	KCHKLAPLGSKNPEQYLTKEQQKACLEMAAAELIREIKQGGSLN*
Ga0137376_117325501	3300012208	Vadose Zone Soil	PLGSKNPEQYLTKEQQKACLEMAAAELIREFTQGRSLN*
Ga0137386_107629491	3300012351	Vadose Zone Soil	CHMLAHRRSKNPEQYLNKEQQKECLDSAAVELIREIKQKRPLS*
Ga0137366_106626021	3300012354	Vadose Zone Soil	RSSKNPEQYLTKEQQKACLDSAAAELIREIKHKQSLN*
Ga0126375_106038991	3300012948	Tropical Forest Soil	KLAPRGSKNPEQHLTKEQQKACLDSAAAELIREITQGQSLN*
Ga0132256_1015537811	3300015372	Arabidopsis Rhizosphere	KLAPLGSKNPEQYLTKEQQKACLDSAVAELIREITQGRSLN*
Ga0182041_101268131	3300016294	Soil	RCRKLAPLGSKNPEQYLTKEQQKACLEMAAAELIREITQGRSLN
Ga0182041_102021971	3300016294	Soil	SKNPERYLTKGQQKACLDSAAAELIREITQQQSLN
Ga0182041_102895441	3300016294	Soil	RCQKLAPRGSKDPEQYLTKEQQKACLYSAAIELIREITQRRSLN
Ga0182041_118018601	3300016294	Soil	HKLAHRGSKNPEQYLTKEQQKACLDSAAAELIREITQRQSLN
Ga0182041_122972592	3300016294	Soil	HGRSKYPEQHLTKAQQKACLDAAAVELIREITQQGSVN
Ga0182033_119397522	3300016319	Soil	RLAPRRSNNPEQYLTKEQQKACLDSAAAELIREITQQRPLH
Ga0182035_103854041	3300016341	Soil	AKKWHQRCHKLAHRRSKNPEQYLTKEQQKACLDSAAIELIREITQQRPLN
Ga0182035_110613211	3300016341	Soil	WNQRCLKLAPRGSKNPEQYLTKEQQKACLDSAAAELIREIMQGRSLN
Ga0182035_112710881	3300016341	Soil	RCRKLAHRRSKNPEQYLTKEQQKACLDAAAAELVREITQGRPLH
Ga0182035_115810732	3300016341	Soil	SKNPEQHLTKAQQKGCLDAAAVELIREITQQGSIN
Ga0182035_118502641	3300016341	Soil	LAPGGSSNPQQYLTKEQQEACLDSAAAELIREIKQRRPLN
Ga0182040_105768142	3300016387	Soil	HKLVHGRSKYPEQHLTKAQQKACLDAAAVELIREITQQGSVN
Ga0182040_114880971	3300016387	Soil	SKNPEQYLTKEQQKGCLDSAAAELIREITQRQSLN
Ga0182037_111396551	3300016404	Soil	CHKLAPRGSKNPEQHLTKEQQKACLNSAAAELIREITQRQSLN
Ga0182039_108271701	3300016422	Soil	CRKLAHRRSKNPEQYLTKEQQKACLDAAAAELIREITQGRPLH
Ga0182039_112904961	3300016422	Soil	WQQKCFKLAPGGSRNPQQYLTREQQEACLDSAAAELIREIKQRRPLN
Ga0182038_100542145	3300016445	Soil	APRGGNKNAVQYLTKEQQKACLDSAAAELIREIKHKRSLN
Ga0182038_105208802	3300016445	Soil	GSKNPEQYLTKEQQKACLDSAAAELIREITQRQSLN
Ga0182038_112534511	3300016445	Soil	KLAPRGSKNPEQYLTKEQQKACLDSAAAELIREIMQGRSLN
Ga0184640_104079342	3300018074	Groundwater Sediment	TGSKNPEQYPTKEQQKACLEMAAAELIREITQGRSLN
Ga0190270_109470451	3300018469	Soil	WNQRCSKLTGSKNPEQYPTKEQQKACTAAELIREITQGRSLN
Ga0210382_102470681	3300021080	Groundwater Sediment	QRCRKLAPLGSKNPEQYLTKEQQKACLEMAAAELIREITQGRSLN
Ga0210387_104612011	3300021405	Soil	GSNRPEQYLTKEQQKACLDSAAAELIREIMQRQPLN
Ga0126371_122504581	3300021560	Tropical Forest Soil	RGSKNPEQYLTKEQQKACLDSAAAELIREITQQQSLN
Ga0208574_1001121	3300026666	Soil	PRGSKNPGQYLTKEQQKTCLDSAAAELIREITQQRPLN
Ga0207855_10283251	3300027039	Tropical Forest Soil	LAQEWQRRCYKFAPRESKNPEQYLTKAQQQAYPDLTAAELIREIMQRRPLN
Ga0137415_111530382	3300028536	Vadose Zone Soil	SKNPEQYLTKEQQKACLDSAAAELIREITQQRSLN
Ga0307323_100256473	3300028787	Soil	RKLAPLGGKNPEQYLTKEQQKACLEMAAADLIREITQGRSLN
Ga0307299_101374671	3300028793	Soil	RKLTGSKIPEQYPTKEQQKACLEMAAAELIREITQGRSLN
Ga0307289_102771933	3300028875	Soil	KLAPLGGKNPEQYLTKEQQKACLEMAAADLIREITQGRSLN
Ga0307289_104914872	3300028875	Soil	KLAGSKNPEQYPTKEQQKACLEMAAAELIREITQGRSLN
Ga0318528_102401193	3300031561	Soil	RCRKLAHRRSKNPEQYLTKEQQKACLDAAAAELIREITQGRPLH
Ga0318528_103596341	3300031561	Soil	KLAHRGSKNPEQYLTKGQQKACLDSAAAELIREITQQQSLN
Ga0318573_108029642	3300031564	Soil	GSKSPEQYLTKEQQKACLDSAAAELIREIMQGRSLN
Ga0310915_101253911	3300031573	Soil	RCLKLAPRGSKNPEQYLTKEQQKACLDSAAAELIREIMQGRSLN
Ga0310915_105472552	3300031573	Soil	KLAHRRSKNPEQYLTKEQQKACLDAAAAELIREITQGRPLH
Ga0307469_116806061	3300031720	Hardwood Forest Soil	RGSKNPEQYLTKEQQKACLDSAVAELIREITQGRSLN
Ga0318493_103238211	3300031723	Soil	KLAHRGSKNPEQYLTKEQQKACLDSAAAELIREITQRQSLN
Ga0318500_102621972	3300031724	Soil	SRSKNPEQYLTKEQQEACLESAAAELIREITQGRPLN
Ga0306918_102715461	3300031744	Soil	RSKNFEQYLTKEQQKACLDAAAAELIREITQGRSLH
Ga0306918_112118031	3300031744	Soil	HRGSKNPEQYLTKEQQKACLDSAAAELIREITQRQSLN
Ga0318502_109574421	3300031747	Soil	LAPLGSKNPEQYLTKEQQKACLEMAAAELIREITQGRSLN
Ga0318535_105196071	3300031764	Soil	KLAPLGSKNPEQYLTKEQQKACLEMAAAELIREITQGRSLN
Ga0318554_103962301	3300031765	Soil	SKNPERYLTKEQQKACLDSAAAELIREITQRQSLN
Ga0318509_106351221	3300031768	Soil	LAHRGSKNPEQYLTKGQQKACLDSAAAELIREITQQQSLN
Ga0318546_101974854	3300031771	Soil	GSKDPEQYLTKEQQKACLDLAAVELIREITQRRSLN
Ga0318546_102209691	3300031771	Soil	HRGSKNPEQYLTKGQQKACLDSAAAELIREITQQQSLN
Ga0318498_101050831	3300031778	Soil	NKNAVQYLTKEQQKACLDSAAAELIREITQQRPLN
Ga0318508_11168781	3300031780	Soil	LAPGGSKNPQQGLSKEQQETCLNSASAELIREIKQLRPLN
Ga0318497_103309431	3300031805	Soil	RGSKDPEQYLTKEQQKACLDSAAVELIREITQRRSLN
Ga0310917_103475192	3300031833	Soil	RRSKNPEQYLTKEQQKACLDAAAAELIREITQGRPLH
Ga0310917_104919872	3300031833	Soil	GSKNPEQYLTKEQQKACLEMAAAELIREITQGRSLN
Ga0306919_106198501	3300031879	Soil	HRRSKNPEQYLTKEQQKACLDAAAAELIREITQGRSLH
Ga0306919_108879912	3300031879	Soil	VHGRSKYPEQHLTKAQQKACLDAAAVELIREITQQGSVN
Ga0306919_113351951	3300031879	Soil	KLAPLGSKNLEQYLTKEQQKACLEMAAAELIREITQGRSLN
Ga0306919_113469171	3300031879	Soil	GSRNPQQYLTKEQQEACLDSAAAELIREIKQRRPLN
Ga0318551_103234081	3300031896	Soil	GSKSPEQYLTKEQQKACLDSAAAELIREITQRQSLN
Ga0306921_102571864	3300031912	Soil	RGSKHPEQYLTKEQQKACLDSAAAELIREIMQGRSLN
Ga0306921_125333321	3300031912	Soil	SKNPEQYLTKEQQKACLEMAAAELIREITQGRSLN
Ga0310916_101579014	3300031942	Soil	PRGSKDPEQYLTKEQQKACLYSAAIELIREITQRRSLN
Ga0310916_110861251	3300031942	Soil	RTNNPEQYLTKEQQKACLDSAAVELIREITQQPSLN
Ga0310916_116219021	3300031942	Soil	YKLAPRGSKNPEQYLTKEQQEACLDSAAAELIREIMHQRPLN
Ga0310910_103273273	3300031946	Soil	ADRRSKNPEQYLTKEQQKACLDAAAAELIREITQGRPLH
Ga0310910_111624131	3300031946	Soil	RGSKNPEQHLTKEQQKACLNSAAAELIREITQRQSLN
Ga0310909_105281771	3300031947	Soil	RRSKNPEQYLTKEQQKACLDAAAAELIREITQGWPLH
Ga0306926_107660523	3300031954	Soil	HRRSKNPERFLVKEQQKACLDSAAVELIREITHKRPLN
Ga0306926_114524741	3300031954	Soil	APRGSKDPAQYLTKEQQKACLDSAAVELIREITQRRSLN
Ga0318531_101672621	3300031981	Soil	HKLAPRGSKNPEQHLTQEQQKACLNSAAAELIREITQRQSLN
Ga0318531_104036121	3300031981	Soil	AHRGSKNPEQYLTKEQQKACLDSAAAELTREISQRQSLN
Ga0306922_100460566	3300032001	Soil	HKLAHRRNKNPEQYLTKEQQKAFLDSAAIELIREITQQRPLN
Ga0306922_111945402	3300032001	Soil	AHGRSANPDQYLTNERQKACLDSAAAELIREITQQPSLN
Ga0306922_115438551	3300032001	Soil	PRDSKNPEQYLTKEQQKACLDSAAAELIREIIQGRSLN
Ga0318545_101461692	3300032042	Soil	WNERCRKHADRRSKNPEQYLTKEQQKACLDAAAAELIREITQGRPLH
Ga0318532_100980373	3300032051	Soil	PLGSKNPEQYLTKEQQKACLEMAAAELIREITQGRSLN
Ga0318505_103283672	3300032060	Soil	RKLAHRRSKNPEQYLTKEQQKACLDAAAAELIREITQGRPLH
Ga0318540_105999491	3300032094	Soil	LAPRGSKDPAQYLTKEQQKACLDSAAVELIREITQRRSLN
Ga0306920_1022506681	3300032261	Soil	KLAPRGSKDPEQYLTKEQQKACLDLAAVELIREITQRRSLN
Ga0306920_1039131421	3300032261	Soil	LIPRGSKNPEQYLTKEQQKACLDSAAAELIREITQGRSLN
Ga0310914_104416943	3300033289	Soil	SKNPEQHLTNEQQKACLNSAAAELIREITQQQSLN
Ga0318519_105596401	3300033290	Soil	SHKLAHRGSKNPEQYLTKEQQKACLDSAAAELIREITQRQSLN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F069892

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences