Metagenome Family F077695

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077695
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	61 residues
Representative Sequence	MTDYNIGPGVAQAIADNGDEARSDERYIIMDEGHKVSLTFGRDAQYFWYEEDNRVNRVPFR
Number of Associated Samples	55
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.49 %
% of genes near scaffold ends (potentially truncated)	22.22 %
% of genes from short scaffolds (< 2000 bps)	70.94 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.81

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (80.342 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (39.316 % of family members)
Environment Ontology (ENVO)	Unclassified (61.538 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (76.068 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.87% β-sheet: 25.84% Coil/Unstructured: 66.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.81
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.81
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.1.10.3: Coatomer appendage domain	d1r4xa1	1r4x	0.64085
b.30.5.4: Aldose 1-epimerase (mutarotase)	d1lura_	1lur	0.6389
b.69.4.1: WD40-repeat	d1nr0a2	1nr0	0.63715
b.30.5.7: Hypothetical protein HI1317	d1jova_	1jov	0.62851
d.17.1.0: automated matches	d4it7a_	4it7	0.62173

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF09458	H_lectin	5.13
PF02839	CBM_5_12	4.27
PF13560	HTH_31	1.71
PF13229	Beta_helix	1.71
PF04466	Terminase_3	0.85
PF13524	Glyco_trans_1_2	0.85
PF01507	PAPS_reduct	0.85
PF01391	Collagen	0.85
PF07508	Recombinase	0.85
PF06737	Transglycosylas	0.85
PF12957	DUF3846	0.85
PF13364	BetaGal_dom4_5	0.85
PF03837	RecT	0.85
PF00672	HAMP	0.85
PF01832	Glucosaminidase	0.85
PF03237	Terminase_6N	0.85
PF13518	HTH_28	0.85
PF00145	DNA_methylase	0.85
PF04883	HK97-gp10_like	0.85
PF14659	Phage_int_SAM_3	0.85
PF12705	PDDEXK_1	0.85
PF00196	GerE	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.85
COG1783	Phage terminase large subunit	Mobilome: prophages, transposons [X]	0.85
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.85
COG3723	Recombinational DNA repair protein RecT	Replication, recombination and repair [L]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.34 %
All Organisms	root	All Organisms	19.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.34 %
cellular organisms	root	All Organisms → cellular organisms	14.53 %
Viruses	superkingdom	All Organisms → Viruses	5.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.34 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.71 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.71 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.71 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.85 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.85 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	0.85 %
Lentisphaerae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae	0.85 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	1.71 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.85 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
unclassified Lentisphaerota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota	0.85 %
unclassified Candidatus Omnitrophica	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica	0.85 %
Chthonomonadetes	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.71 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.85 %
Candidatus Omnitrophica bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	0.85 %
Lentisphaerae bacterium GWF2_52_8	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium GWF2_52_8	0.85 %
Microgenomates group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group	0.85 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.85 %
Chthonomonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	1.71 %
unclassified Chthonomonadales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → unclassified Chthonomonadales	0.85 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.85 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.85 %
Candidatus Woesebacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria	0.85 %
Candidatus Omnitrophica bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	0.85 %
Lentisphaerae bacterium GWF2_52_8	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium GWF2_52_8	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1.71 %
Chthonomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → unclassified Chthonomonadales → Chthonomonadales bacterium	0.85 %
Candidatus Woesebacteria bacterium RBG_13_36_22	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium RBG_13_36_22	0.85 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.85 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.85 %
Candidatus Omnitrophica bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	0.85 %
Lentisphaerae bacterium GWF2_52_8	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium GWF2_52_8	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1.71 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	0.85 %
Chthonomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → unclassified Chthonomonadales → Chthonomonadales bacterium	0.85 %
Candidatus Woesebacteria bacterium RBG_13_36_22	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium RBG_13_36_22	0.85 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.85 %
Candidatus Omnitrophica bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	0.85 %
Lentisphaerae bacterium GWF2_52_8	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium GWF2_52_8	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1.71 %
Rhizobium sp. BK313	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. BK313	0.85 %
Chthonomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → unclassified Chthonomonadales → Chthonomonadales bacterium	0.85 %
Candidatus Woesebacteria bacterium RBG_13_36_22	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium RBG_13_36_22	0.85 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.85 %
Candidatus Omnitrophica bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	0.85 %
Lentisphaerae bacterium GWF2_52_8	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium GWF2_52_8	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10000533	Not Available	14157	Open in IMG/M
3300004633\|Ga0066395_10010769	All Organisms → cellular organisms → Bacteria	3378	Open in IMG/M
3300004633\|Ga0066395_10045632	Not Available	1914	Open in IMG/M
3300004633\|Ga0066395_10066780	Not Available	1643	Open in IMG/M
3300004633\|Ga0066395_10091557	Not Available	1447	Open in IMG/M
3300004633\|Ga0066395_10124267	Not Available	1277	Open in IMG/M
3300004633\|Ga0066395_10134121	Not Available	1237	Open in IMG/M
3300004633\|Ga0066395_10190419	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium RBG_13_36_22	1067	Open in IMG/M
3300004633\|Ga0066395_10519545	Not Available	688	Open in IMG/M
3300004633\|Ga0066395_10898760	Not Available	536	Open in IMG/M
3300005329\|Ga0070683_100000160	All Organisms → cellular organisms → Bacteria	44331	Open in IMG/M
3300005434\|Ga0070709_10744151	Not Available	766	Open in IMG/M
3300005435\|Ga0070714_100000251	Not Available	41898	Open in IMG/M
3300005435\|Ga0070714_100440629	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300005436\|Ga0070713_100641011	Not Available	1011	Open in IMG/M
3300005526\|Ga0073909_10097424	All Organisms → Viruses → Predicted Viral	1157	Open in IMG/M
3300005526\|Ga0073909_10110180	Not Available	1101	Open in IMG/M
3300005526\|Ga0073909_10242114	Not Available	798	Open in IMG/M
3300005526\|Ga0073909_10466179	Not Available	606	Open in IMG/M
3300005614\|Ga0068856_100742725	Not Available	1001	Open in IMG/M
3300005764\|Ga0066903_100026300	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6422	Open in IMG/M
3300005764\|Ga0066903_100196460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → unclassified Chthonomonadales → Chthonomonadales bacterium	3008	Open in IMG/M
3300005764\|Ga0066903_100333279	Not Available	2435	Open in IMG/M
3300005764\|Ga0066903_100889773	Not Available	1609	Open in IMG/M
3300005764\|Ga0066903_101341684	Not Available	1339	Open in IMG/M
3300005764\|Ga0066903_101593544	Not Available	1238	Open in IMG/M
3300005764\|Ga0066903_102871065	Not Available	935	Open in IMG/M
3300006028\|Ga0070717_10105873	Not Available	2394	Open in IMG/M
3300006028\|Ga0070717_10163517	All Organisms → Viruses → Predicted Viral	1932	Open in IMG/M
3300006038\|Ga0075365_10446661	Not Available	913	Open in IMG/M
3300006173\|Ga0070716_100128923	Not Available	1596	Open in IMG/M
3300006854\|Ga0075425_100568770	Not Available	1304	Open in IMG/M
3300009156\|Ga0111538_10178611	All Organisms → Viruses → Predicted Viral	2695	Open in IMG/M
3300009156\|Ga0111538_12901025	Not Available	600	Open in IMG/M
3300009792\|Ga0126374_11069317	Not Available	638	Open in IMG/M
3300010042\|Ga0126314_10253279	Not Available	1249	Open in IMG/M
3300010042\|Ga0126314_10934620	Not Available	642	Open in IMG/M
3300010046\|Ga0126384_12011631	Not Available	553	Open in IMG/M
3300010047\|Ga0126382_10670390	Not Available	865	Open in IMG/M
3300010048\|Ga0126373_10148736	Not Available	2223	Open in IMG/M
3300010048\|Ga0126373_11442975	Not Available	754	Open in IMG/M
3300010337\|Ga0134062_10163885	Not Available	995	Open in IMG/M
3300010358\|Ga0126370_10058689	Not Available	2486	Open in IMG/M
3300010358\|Ga0126370_10487273	Not Available	1038	Open in IMG/M
3300010358\|Ga0126370_10526891	Not Available	1004	Open in IMG/M
3300010358\|Ga0126370_10549778	Not Available	986	Open in IMG/M
3300010358\|Ga0126370_11108083	Not Available	730	Open in IMG/M
3300010358\|Ga0126370_12428565	Not Available	521	Open in IMG/M
3300010360\|Ga0126372_11536925	Not Available	702	Open in IMG/M
3300010360\|Ga0126372_13243376	Not Available	506	Open in IMG/M
3300010361\|Ga0126378_10053125	Not Available	3788	Open in IMG/M
3300010361\|Ga0126378_10079062	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium GWF2_52_8	3179	Open in IMG/M
3300010361\|Ga0126378_12353146	Not Available	608	Open in IMG/M
3300010362\|Ga0126377_10111980	Not Available	2507	Open in IMG/M
3300010362\|Ga0126377_10818095	Not Available	991	Open in IMG/M
3300010362\|Ga0126377_11087711	Not Available	868	Open in IMG/M
3300010362\|Ga0126377_11292919	Not Available	801	Open in IMG/M
3300010362\|Ga0126377_11745230	Not Available	698	Open in IMG/M
3300010362\|Ga0126377_11780801	Not Available	691	Open in IMG/M
3300010366\|Ga0126379_10000702	All Organisms → cellular organisms → Bacteria	18923	Open in IMG/M
3300010366\|Ga0126379_10000770	All Organisms → cellular organisms → Bacteria	18340	Open in IMG/M
3300010366\|Ga0126379_10001143	All Organisms → cellular organisms → Bacteria	15776	Open in IMG/M
3300010366\|Ga0126379_10111672	Not Available	2459	Open in IMG/M
3300010366\|Ga0126379_10112467	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	2452	Open in IMG/M
3300010366\|Ga0126379_10566002	Not Available	1218	Open in IMG/M
3300010366\|Ga0126379_11521372	Not Available	775	Open in IMG/M
3300010366\|Ga0126379_11884905	Not Available	701	Open in IMG/M
3300010376\|Ga0126381_100105208	Not Available	3614	Open in IMG/M
3300010398\|Ga0126383_10000176	All Organisms → cellular organisms → Bacteria	31749	Open in IMG/M
3300010398\|Ga0126383_10028752	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	4379	Open in IMG/M
3300010398\|Ga0126383_13602022	Not Available	506	Open in IMG/M
3300012200\|Ga0137382_10000076	All Organisms → cellular organisms → Bacteria	39462	Open in IMG/M
3300012200\|Ga0137382_10494745	Not Available	868	Open in IMG/M
3300012212\|Ga0150985_101720742	Not Available	3215	Open in IMG/M
3300012519\|Ga0157352_1099080	Not Available	514	Open in IMG/M
3300012948\|Ga0126375_10226143	Not Available	1249	Open in IMG/M
3300012948\|Ga0126375_10546987	Not Available	873	Open in IMG/M
3300012971\|Ga0126369_10022413	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	5082	Open in IMG/M
3300012971\|Ga0126369_10527683	Not Available	1242	Open in IMG/M
3300012971\|Ga0126369_10580070	Not Available	1189	Open in IMG/M
3300012971\|Ga0126369_11708187	Not Available	719	Open in IMG/M
3300012971\|Ga0126369_11854709	Not Available	691	Open in IMG/M
3300012971\|Ga0126369_11925068	Not Available	680	Open in IMG/M
3300012971\|Ga0126369_12174698	Not Available	642	Open in IMG/M
3300012989\|Ga0164305_10085658	Not Available	1975	Open in IMG/M
3300013296\|Ga0157374_10000959	Not Available	25012	Open in IMG/M
3300015371\|Ga0132258_10001193	All Organisms → cellular organisms → Bacteria	44743	Open in IMG/M
3300015371\|Ga0132258_11811496	All Organisms → Viruses → Predicted Viral	1538	Open in IMG/M
3300015372\|Ga0132256_102149801	Not Available	663	Open in IMG/M
3300015374\|Ga0132255_100290563	Not Available	2350	Open in IMG/M
3300016387\|Ga0182040_10148703	Not Available	1666	Open in IMG/M
3300018482\|Ga0066669_12345397	Not Available	510	Open in IMG/M
3300021475\|Ga0210392_10003571	Not Available	8060	Open in IMG/M
3300021475\|Ga0210392_10184576	All Organisms → Viruses → Predicted Viral	1447	Open in IMG/M
3300021560\|Ga0126371_10002089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. BK313	17135	Open in IMG/M
3300021560\|Ga0126371_10043796	Not Available	4256	Open in IMG/M
3300021560\|Ga0126371_11869677	Not Available	720	Open in IMG/M
3300022910\|Ga0247768_1045450	Not Available	1379	Open in IMG/M
3300024177\|Ga0247686_1004983	Not Available	1366	Open in IMG/M
3300025928\|Ga0207700_10224824	Not Available	1593	Open in IMG/M
3300025929\|Ga0207664_10048875	Not Available	3328	Open in IMG/M
3300026645\|Ga0208572_10338	Not Available	549	Open in IMG/M
3300026666\|Ga0208574_100818	Not Available	639	Open in IMG/M
3300027821\|Ga0209811_10096371	Not Available	1059	Open in IMG/M
3300027874\|Ga0209465_10003045	Not Available	7291	Open in IMG/M
3300027874\|Ga0209465_10049835	Not Available	2002	Open in IMG/M
3300027874\|Ga0209465_10109141	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300027874\|Ga0209465_10113664	Not Available	1332	Open in IMG/M
3300027874\|Ga0209465_10542058	Not Available	579	Open in IMG/M
3300027874\|Ga0209465_10548402	Not Available	575	Open in IMG/M
3300031719\|Ga0306917_10149621	Not Available	1730	Open in IMG/M
3300031793\|Ga0318548_10639947	Not Available	516	Open in IMG/M
3300031910\|Ga0306923_10873772	Not Available	987	Open in IMG/M
3300031912\|Ga0306921_12281388	Not Available	568	Open in IMG/M
3300031942\|Ga0310916_11059234	Not Available	675	Open in IMG/M
3300032059\|Ga0318533_11205052	Not Available	554	Open in IMG/M
3300032066\|Ga0318514_10476463	Not Available	664	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.60%
Host-Associated	Host-Associated	9.40%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.60%
Plants	Host-Associated → Plants	9.40%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.27%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.85%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.83%
Loam	Environmental → Terrestrial → Soil → Loam	29.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.42%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.85%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.42%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	39.32%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	19.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.13%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.56%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.56%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.71%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.85%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.85%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022910	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L016-104C-6	Environmental	Open in IMG/M
3300024177	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK27	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026645	Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -Nitrogen NN342 (SPAdes)	Environmental	Open in IMG/M
3300026666	Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN351 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_100005332	3300004633	Tropical Forest Soil	MTDYNIGTGVAQAIADNGDEARSDERYIIMDEGHKVSLTFGRDAQYFWLEEDNRVNRVPFR*
Ga0066395_100107692	3300004633	Tropical Forest Soil	MSDYSIGPGVQQAMADNGDEPRSDERYIILDEGHRISLTFGKLAQYFWYEEDNAVNRVPF
Ga0066395_100456325	3300004633	Tropical Forest Soil	MTDYSIGPGVAQAIADNDDEARSDERYIILDEGHKVSLTLGRDAQYWWYEEDSRVNRLPFS*
Ga0066395_100667802	3300004633	Tropical Forest Soil	MTDYNVGPGVAQAIADNQDEARSDERYIILDEGHRISLTFARDAQYYWYEEDNRVNRAPFPR*
Ga0066395_100915573	3300004633	Tropical Forest Soil	MTDFNIGPGVAQAIADNNDEARSDERYIIMDEGHKISLTFGRDAQYFWYEEDNATNRVPFR*
Ga0066395_101242672	3300004633	Tropical Forest Soil	VSEFNIGPGVAQAIADNGDEARSDEQFVILDEGHKISRTFARDGVYFWYEEDNATKRSPF
Ga0066395_101341214	3300004633	Tropical Forest Soil	MTDYNIGPGVADAMAQNGDEARSDERFIILDEGHKVSITFATGGVYYWYEEDNRTQRTPF
Ga0066395_101904191	3300004633	Tropical Forest Soil	MTDYNIGPGVAQAIADNSDEARSDERYVILDEGHRVSLTLARDAQYWYYEEDNRVNRLPFS*
Ga0066395_105195452	3300004633	Tropical Forest Soil	MTDYNIGPGVAQAIADNNDEARSDERYIIMDEGHKISLTFGRDAQYFWYEEDNAT
Ga0066395_108987602	3300004633	Tropical Forest Soil	MTDYNVGPGVQQAIVDNGDEARSDERYLIMDEGHKVSLTLARDSQYWWYEEDNRVNRVPFR*
Ga0070683_10000016014	3300005329	Corn Rhizosphere	VTEFAVGPGVAQAIADNGDEARSDERFIVLEEGHKISLTLARDAQYFYYQQENAVKRCPFR*
Ga0070709_107441511	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTDYNVGPGVAQAIADNGDEARSDERFVILEEGHKVSLTLARDSQYWWYEEDNRVNRLPFRDS*
Ga0070714_10000025144	3300005435	Agricultural Soil	MTDWNVGPGVAEAIADNGDEARSDERFVILDEGHKVSLTLARDGQYWWYEEDNRVNRLPFR*
Ga0070714_1004406291	3300005435	Agricultural Soil	MTDFNIGPGVAQAIADNGDEARSDERFIILDEGNKVSLTFARDAEYLWYESENAVKRCPFR*
Ga0070713_1006410113	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTDYNVGPGVAQAIADNGDEARSDERYVIMDEGSKVSLTLGRDAQYWYYEADNRVNRLPFQ*
Ga0073909_100974242	3300005526	Surface Soil	MPEWVIGPGVAQAIADAGDEARSDERYIVMDEGHKISLTMGRDGQYWYYEEDNRVNRLPF
Ga0073909_101101803	3300005526	Surface Soil	MSDWSIGPGVQQALADNGDEARSDERFIVMDEGHKISLTFGRDATYFWYEEDNRVNRAPFR*
Ga0073909_102421141	3300005526	Surface Soil	MSDWSIGPGVAQAIADNGDEARSDERFIIMDEGHKVSLTFARDATYYWYEEDNRVNRAPFR*
Ga0073909_104661791	3300005526	Surface Soil	RCPDRLGQRRREVQAQVSEYNIGPGVQQSIAEHGDEARSDEQYIILEPGKKISLTLARDGQYWYYEEDNRVNRVPF*
Ga0068856_1007427252	3300005614	Corn Rhizosphere	MTENWNVGPGVAQAIADNGDEARSDERYIILDEGHKVSITVARDGIYYYLEEDGRVSRTPF*
Ga0066903_1000263005	3300005764	Tropical Forest Soil	VSFSVGPGVAQAIADNGDEARSDERFIILDEGHKISLTFGRDATYYWYEEDNRVNRLPFR
Ga0066903_1001964604	3300005764	Tropical Forest Soil	VSEFNIGPGVAQAIADNGDEARSDEQFIILDEGHKISRTFARDGVYFWYEEDNATKRSPF
Ga0066903_1003332794	3300005764	Tropical Forest Soil	MTDYNIGPGVAQAIADNGDEARSDERYIILDEGHRVSLTLARDGQYWWYEEDNRVNRVPFR*
Ga0066903_1008897734	3300005764	Tropical Forest Soil	MTDYSIGPGVQQAIADNGDEARSDERYIIMDEGHKVSLTFGRDAQYFWYEEDNRVNRVPFR*
Ga0066903_1013416843	3300005764	Tropical Forest Soil	MTDYNIGPGVAQAIADNNDEARSDERYIIMDEGHKISLTFGRDAQYFWYEEDNATNRVPFR*
Ga0066903_1015935442	3300005764	Tropical Forest Soil	MTDFVVGPGVAQAISDNNDEARSDERYIIMDEGNRVSLTFARDAEYVWYERDNAVKRCPFR*
Ga0066903_1028710653	3300005764	Tropical Forest Soil	VSYSIGPGVEQAIADNGDEARSDERYIILDEGHRVSLTLARDSQYWWYEEDNRVNRLPFQR*
Ga0070717_101058734	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MAYSIGSGVAQAIADNGDEARSDERFIILDEGHKVSLTFGRDATYYWYEEDNRVNRSPFL
Ga0070717_101635172	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MHDYVIGPGVTQAIADNGDEARSDERYVIMDEGNKISLTLGRDAQYWYYEADNRVNRLPFQ*
Ga0075365_104466611	3300006038	Populus Endosphere	RRPMAEYMIGPGVAQAIADNGDSARSDEIYVVLEPGHKISVTHAQLAQYWYYEEDNRVSRLPFPG*
Ga0070716_1001289234	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MTDYNVGPGVAQAIADNGDEARSDERFVILEEGHKVSLTLARDSQYWWYEEDNRVNRL
Ga0075425_1005687703	3300006854	Populus Rhizosphere	MTDYNIGPGVAQAIADNGDEPRSDERYVIMDEGHKVSLTLGRDGQYWYYEEDNRVNRLPFS*
Ga0111538_101786114	3300009156	Populus Rhizosphere	MAEYMIGPGVAQAIADNGDSARSDEIYVVLEPGHKISVTHAQLAQYWYYEEDNRVSRLPFPG*
Ga0111538_129010252	3300009156	Populus Rhizosphere	EGLEAEVEIMAFSIGPGVAQAISDNNDSARSDELYVVNTTGHKISQTYARDAIYYYYEEDNRVVRLPFE*
Ga0126374_110693173	3300009792	Tropical Forest Soil	MTDYSIGPGVAQAIADNGDEARSDERYIIMDEGHKVSLTFGRDAQYFWYEEDNRVNRVPFR*
Ga0126314_102532793	3300010042	Serpentine Soil	MTDFSVGPGVADAIAANSDEARSDERFIILDEGHKVSLTIAKLAIYLWIQEDNAVSRVPF
Ga0126314_109346202	3300010042	Serpentine Soil	GPGVADAILANNDEMRSDERFIILDEGHKISLTFGRDAQYFYYQEDNAVRRTPFR*
Ga0126384_120116312	3300010046	Tropical Forest Soil	MADYNIGPGVAQAIADNGDEPRSDERYVILDEGSKVSLTLGRDAQYWYYEQDNRVNRLPFS*
Ga0126382_106703902	3300010047	Tropical Forest Soil	MDFTIGPGVAQAMDDAGDEARSDEMYIVNVDGQKVSQTFGRDAVYYWMEADNKVNRVPFE
Ga0126373_101487367	3300010048	Tropical Forest Soil	MTDQFSVGPGVAQAIADNNDEARSDERYIILDEGHRVSLTFGRDAQYFYYEEDNRVNRSPFR*
Ga0126373_114429752	3300010048	Tropical Forest Soil	MSDYNIGPGVQQAIADNGDEARSDEQFIILDEGHKISRTFARDGVYFWYEEDNATRRSPF
Ga0134062_101638853	3300010337	Grasslands Soil	GPGVAQAIADNGDEARSDERFIILDEGQKVSLTLARDAQYWWYEADNKVNRLPFQ*
Ga0126370_100586891	3300010358	Tropical Forest Soil	MTDYNVGPGVAQAIADNGDEARSDEQFIILDEGHKISRTFARDGVYFWYEEYNATKRSPF
Ga0126370_104872732	3300010358	Tropical Forest Soil	MTDFVVGPGVAQAIADNNDEARSDEQFKILTEGDKISETFGRDAVYYWYQRDNLVKRSPFPG*
Ga0126370_105268912	3300010358	Tropical Forest Soil	MTDFSVGPGVAQALADNEDEARSDERYIVLDEGHKISLTFGRDATYYYYEEDGRVNRQPFRN*
Ga0126370_105497782	3300010358	Tropical Forest Soil	VTLMTDYNIGPGVADAMAQNGDEARSDERFIILDEGHKVSITFATGGVYYWYEEDNRTQRTPF*
Ga0126370_111080832	3300010358	Tropical Forest Soil	MTDYSIGPGVAQAIADNGDEARSDERYIIMDEGHKVSLTFGKDAQYFWYEEDNRVNRVPFR*
Ga0126370_124285652	3300010358	Tropical Forest Soil	VTEQYSIGPGVQQAIEQNNDEARSDERYVIMEEGSKVSLTLGRDAQYWYYEQDNRVNRLPFS*
Ga0126372_115369251	3300010360	Tropical Forest Soil	MTDYNIGPGVAQAIADNGDEARSDERYIIMDEGHKVSLTFGRDAQYFWYEEDNRVNRVPFR*
Ga0126372_132433762	3300010360	Tropical Forest Soil	VTEQYSIGPGVQQAIEQNNDEARSDERYVIMEEGSKVSLTLGRDAQYWYYEADNKVNRLPFQ*
Ga0126378_100531255	3300010361	Tropical Forest Soil	MTDFVVGPGVAQAIADNGDEARSDERYVILDEGHKVSLTLGRDAQYWYYEEDSRVNRLPFS*
Ga0126378_100790626	3300010361	Tropical Forest Soil	MTDQFSVGPGVAQAIADNNDEARSDERYIILDEGHRVSLTFGRDAQYFYFEEDNRVNRSPFR*
Ga0126378_123531462	3300010361	Tropical Forest Soil	MTDSYNIGPGVAQAISDNNDEARSDERYVIMDEGHKVSLTLGRDAQYWYYEEDNRVNRLPFS*
Ga0126377_101119805	3300010362	Tropical Forest Soil	MTDQYSIGPGVQEAIAANNDEARSDERYVIMDPGSKVSLTLGRDAQYWYYEQDNRVNRLPFS*
Ga0126377_108180952	3300010362	Tropical Forest Soil	MSEYNVGPGVAQALADNNDEARSDERYVILDEGHRVSLTLGRDAQYWYYEEDNRVNRLPFS*
Ga0126377_110877112	3300010362	Tropical Forest Soil	MTDYSVGPGVAQAIADNADEARSDEQFIILDEGHKISRTFARDAIYYWIEEDNRTSRTPF
Ga0126377_112929191	3300010362	Tropical Forest Soil	VSDFVVGPGVLQALLENEDEARSDEQYIILDEGHRISQTFGKDAVYYWYEEDNRVNR
Ga0126377_117452302	3300010362	Tropical Forest Soil	GPGVAQAIADNGDEARSDERYVIMDEGHKVSLTLARDAQYWYYEEDNRVNRLPFS*
Ga0126377_117808012	3300010362	Tropical Forest Soil	MADYVIGPGVAQAIADSSDEARSDEQYIIMDEGHRISRTFGRDAIYWYYEEDNATRRTPFR*
Ga0126379_1000070219	3300010366	Tropical Forest Soil	MTDYSIGPGVEQAIADNSDEARSDERYIIMDEGHKVSLTFGRDAQYFWYEEDNRVNRVPFR*
Ga0126379_1000077010	3300010366	Tropical Forest Soil	MPDSFVVGPGVAQAIADNGDEPRSDERYIILDEGHRVSLTFGRDAQYFYYEEDNRVNRAPFR*
Ga0126379_1000114323	3300010366	Tropical Forest Soil	MTDYNIGPGVQQAIADNGDEARSDERYIIMDEGHKISLTFGRDAQYFWYEEDNATNRVPFR*
Ga0126379_101116728	3300010366	Tropical Forest Soil	MTDYSIGPGVQQAMADNGDEPRSDERYIILDEGHRVSLTFGRDGQYFWYEEDNRVNRVPFR*
Ga0126379_101124677	3300010366	Tropical Forest Soil	MADFNVGPGVAQAIADNNDEARSDERYIIMDEGHKISLTFGRDAQYFWYEEDNATNRVPFR*
Ga0126379_105660021	3300010366	Tropical Forest Soil	MSFVVGPGVAQAIADNNAEARSDERYIIMDEGHKVSLTFATDGTYYWYEEDGTVQRCPFR
Ga0126379_115213722	3300010366	Tropical Forest Soil	MNDDFNVGPGVAQAIADNGDEARSDERYIILEEGHKVSLTFGRDAQYVWIEEDNRVNRVPFLQ*
Ga0126379_118849052	3300010366	Tropical Forest Soil	PGVQRAIADNGDEAGSDERYIIMDEGHKGSLTFGRDAQYFWYEEDNRVNRVPFR*
Ga0126381_1001052082	3300010376	Tropical Forest Soil	MSFSVGPGVAQAIADNGAEARSDERFIILDEGHKISMTFATDGIYYWYQEDNRTQRCPF*
Ga0126383_1000017620	3300010398	Tropical Forest Soil	MTDYNIGPGVQQAIADNGDEARSDERYIILDDGHKISLTLARDSQYWWYEEDNRVNRVPFR*
Ga0126383_100287526	3300010398	Tropical Forest Soil	MTDWNIGPGVAQAIADNGDEARSDEQFIILDEGHKISRTFARDGVYFWYEEDNATKRSPF
Ga0126383_136020222	3300010398	Tropical Forest Soil	AIADNGDEPRSDERYVILDEGSKVSLTLGRDAQYWYYEQDNRVNRLPFQ*
Ga0137382_1000007638	3300012200	Vadose Zone Soil	MTDYNVGPGVAQAITDNGDEARSDERYVIMDEGHKVSLTLGRDGQYWYYEEDNRVNRLPFR*
Ga0137382_104947452	3300012200	Vadose Zone Soil	VAQAIADNGDEARSDERYIILDEGKKISLTFARDATYYYYEEDGRVNRSPFR*
Ga0150985_1017207425	3300012212	Avena Fatua Rhizosphere	MTDYSIGPGVAQAIADNGDEPRSDERYVIMDEGSKVSLTLGRDAQYWYYEADNKVNRLPFQ*
Ga0157352_10990801	3300012519	Unplanted Soil	MTDWSIGPGVAKAIADNGDEARSDERFVILDEGQKVSLTLARDAQYWWYEADNKVNRLPFQ*
Ga0126375_102261431	3300012948	Tropical Forest Soil	VSEFNIGPGVAQAIADNGDEARSDEQFIILDEGHKISRTFARDGVYFWYEEDNATK
Ga0126375_105469871	3300012948	Tropical Forest Soil	MTDYNIGPGVQQAIADNGDEARSDERYIIMDEGHKVSLTFGRDGQYFWYEEDNRVNRVPFR*
Ga0126369_100224135	3300012971	Tropical Forest Soil	MTEYNIGPGVQQAIADNGDEARSDERYVILAEGSKVSLTLARDAQYWWYEEDNRVNRLPFS*
Ga0126369_105276833	3300012971	Tropical Forest Soil	MTDYNIGPGVQAAIADNGDEARSDERYIILDEGHKVSLTLGRDAQYWWYEEDSRVNRLPFS*
Ga0126369_105800703	3300012971	Tropical Forest Soil	MTDYNVGPGVAQAIADNGDEARSDERYVILDEGAKVSLTLARDAQYWWYEADNKVNRLPFQ*
Ga0126369_117081872	3300012971	Tropical Forest Soil	MTDTYTIGPGVAQAIADNSDEARSDERYIILDEGHKISLTFGRDAVYYWIEEDGRVNRTPF*
Ga0126369_118547092	3300012971	Tropical Forest Soil	SRVPFERQESRTFGTGSLVTDFNIGPGVAQAIADNNDEARSDERYIIMDEGHKISLTFGRDAQYFWYEEDNATNRVPFR*
Ga0126369_119250681	3300012971	Tropical Forest Soil	MTDYSVGPGVAQAIADNDDEARSDERYIILDEGHKVSLTLGRDAQYWWY
Ga0126369_121746981	3300012971	Tropical Forest Soil	RTGPRMTDYNVGPGVAQAIADNNDEARSDERYVILDEGAKVSLTLARDAQYWWYEQDNRVNRLPFS*
Ga0164305_100856585	3300012989	Soil	RREVQTQVSEYNIGPGVQQSIAEHGDEARSDEQYIILEPGKKISLTLARDGQYWYYEEDNRVNRVPF*
Ga0157374_1000095934	3300013296	Miscanthus Rhizosphere	VTEFAVGPGVAQAIADNGDEARSDERFIVLDEGHKISLTLARDAQYFYYQQENAVKRCPFR*
Ga0132258_1000119332	3300015371	Arabidopsis Rhizosphere	MSEWNVGPGVAQAIADNGDEARSDERFIILDEGHKVSLTFARDATYYWYQEDNRVNRAPFR*
Ga0132258_118114965	3300015371	Arabidopsis Rhizosphere	VSDYVIGPGVAQAIQDNDDEARSDEQFVILDEGHKISRTFGRDAIYTYFEEDNAVKRLPFR*
Ga0132256_1021498011	3300015372	Arabidopsis Rhizosphere	VSDYVIGPGVAQAIQDNDDEARSDEQFVILDEGHKISRTFGRDAIYTYFEEDNAVKRLPF
Ga0132255_1002905631	3300015374	Arabidopsis Rhizosphere	TDWNIGPGVAQAITDAGDEPRSDERYVIMDEGHRVSLTLARDAQYWYYEEDNAVKRLPFR
Ga0182040_101487032	3300016387	Soil	MTDYSIGPGVQQAMADNGDEARSDERYIILDDGHRISLTFGRDAQYYWYEEDNRVN
Ga0066669_123453972	3300018482	Grasslands Soil	MTDYSIGPGVAQAIADNGDEARSDERFIILDEGHKVSLTLARDSQYWWYEEDNRVNRLPF
Ga0210392_100035713	3300021475	Soil	MADYNIGPGVAQAIADNGDEPRSDERYIILDEGHKVSLTFARDAQYFYYEEDGRVNRSPF
Ga0210392_101845761	3300021475	Soil	MADYNIGPGVAQAIADNGDEPRSDERYIILDEGHKVSLTFARDAQYFYYEEDG
Ga0126371_100020895	3300021560	Tropical Forest Soil	MTDQFSVGPGVAQAIADNNDEARSDERYIILDEGHRVSLTFGRDAQYFYYEEDNRVNRSPFR
Ga0126371_100437969	3300021560	Tropical Forest Soil	MTDSYNIGPGVAQAISDNNDEARSDERYVIMDEGHKVSLTLGRDAQYWYYEEDNRVNRLPFS
Ga0126371_118696773	3300021560	Tropical Forest Soil	MTDYNIGPGVQAAIADNGDEARSDERYIILDEGHKVSLTLGRDAQYWWYEEDSRVNRLPF
Ga0247768_10454502	3300022910	Plant Litter	VNYNVGPGVAQAIADNGDEARSDERYLIMDEGRKISLTLGKQGQYWYYEEDNTVQRCPFR
Ga0247686_10049832	3300024177	Soil	VSDGFSIGPGVQQALADNNDEARSDERFVILDEGHKVSLTLGRDGQYWWIEEDNRVNRVPFR
Ga0207700_102248243	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTDYNVGPGVAQAIADNGDEARSDERYVIMDEGSKVSLTLGRDAQYWYYEADNRVNRLPF
Ga0207664_100488752	3300025929	Agricultural Soil	MAFSIGPGVQQAIADNGDEARSDERFIILDEGHKVSLTFGRDATYYWYEEDNRVNRSPFL
Ga0208572_103381	3300026645	Soil	MAYSIGPGVQQAIADNGDEARSDERFIILDEGHKVSLTFGRDATYYWYEEDNR
Ga0208574_1008182	3300026666	Soil	VSDGFSVGPGVAQAIADNGDEARSDERFIILDEGHKVSLTLARDGQYWWYEEDNRVNRVPFR
Ga0209811_100963713	3300027821	Surface Soil	MSDWSIGPGVQQALADNGDEARSDERFIVMDEGHKISLTFGRDATYFWYEEDNRVNRAPF
Ga0209465_1000304516	3300027874	Tropical Forest Soil	MTDYNIGTGVAQAIADNGDEARSDERYIIMDEGHKVSLTFGRDAQYFWLEEDNRVNRVPF
Ga0209465_100498354	3300027874	Tropical Forest Soil	MTDYSIGPGVAQAIADNDDEARSDERYIILDEGHKVSLTLGRDAQYWWYEEDSRVNRLPF
Ga0209465_101091412	3300027874	Tropical Forest Soil	MTDFNIGPGVAQAIADNNDEARSDERYIIMDEGHKISLTFGRDAQYFWYEEDNATNRVPF
Ga0209465_101136642	3300027874	Tropical Forest Soil	MTDYNIGPGVADAMAQNGDEARSDERFIILDEGHKVSITFATGGVYYWYEEDNRVNRAPFPR
Ga0209465_105420582	3300027874	Tropical Forest Soil	MTDYNIGPGVAQAIADNSDEARSDERYVILDEGHRVSLTLARDAQYWYYEEDNRVNRLPF
Ga0209465_105484021	3300027874	Tropical Forest Soil	MTDYNVGPGVQQAIVDNGDEARSDERYLIMDEGHKVSLTLARDSQYWWYEEDNRVNRVPF
Ga0306917_101496212	3300031719	Soil	MTDYSIGPGVQQAMADNGDEARSDERYIILDDGHRISLTFGRDAQYYWYEEDNRVNRCPF
Ga0318548_106399472	3300031793	Soil	IGPGVQQAMADNGDEARSDERYIILDDGHRISLTFGRDAQYYWYEEDNRVNRCPFR
Ga0306923_108737721	3300031910	Soil	QQAMADNGDEARSDERYIILDDGHRISLTFGRDAQYYWYEEDNRVNRCPFR
Ga0306921_122813882	3300031912	Soil	MTDFNVGPGVAQAMADNGDEARSDEQFIILNEGHKISLTFGRDAQYFYYQEDNAVRRAPF
Ga0310916_110592342	3300031942	Soil	MTDYSIGPGVQQAMADNGDEARSDERYIILDDGHKISLTFGRDAQYYWYEEDNRVNRCPF
Ga0318533_112050521	3300032059	Soil	YSIGPGVQQAIADNGDEARSDERYIILDEGHKVSLTFGRDAQYIWIEEDNRVNRVPFLA
Ga0318514_104764632	3300032066	Soil	TMTDYSIGPGVQQAMADNGDEARSDERYIILDDGHRISLTFGRDAQYYWYEEDNRVNRCPFR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077695

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences