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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026656 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053063 | Gp0054782 | Ga0208578 |
| Sample Name | Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN577 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 6643647 |
| Sequencing Scaffolds | 25 |
| Novel Protein Genes | 28 |
| Associated Families | 28 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 11 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 5 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | grassland biome → land → fertilized soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Manhattan, Kansas, USA | |||||||
| Coordinates | Lat. (o) | 39.070856 | Long. (o) | -96.582821 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000303 | Metagenome / Metatranscriptome | 1337 | Y |
| F001584 | Metagenome / Metatranscriptome | 668 | Y |
| F001757 | Metagenome / Metatranscriptome | 641 | N |
| F001947 | Metagenome / Metatranscriptome | 613 | Y |
| F002517 | Metagenome | 552 | Y |
| F004992 | Metagenome / Metatranscriptome | 416 | Y |
| F006477 | Metagenome / Metatranscriptome | 372 | Y |
| F007444 | Metagenome / Metatranscriptome | 351 | Y |
| F012145 | Metagenome | 283 | Y |
| F012252 | Metagenome / Metatranscriptome | 282 | Y |
| F016035 | Metagenome / Metatranscriptome | 250 | Y |
| F016050 | Metagenome / Metatranscriptome | 250 | Y |
| F018755 | Metagenome / Metatranscriptome | 233 | Y |
| F019013 | Metagenome / Metatranscriptome | 232 | N |
| F019873 | Metagenome / Metatranscriptome | 227 | Y |
| F022950 | Metagenome / Metatranscriptome | 212 | Y |
| F024391 | Metagenome / Metatranscriptome | 206 | Y |
| F024523 | Metagenome / Metatranscriptome | 205 | Y |
| F034864 | Metagenome / Metatranscriptome | 173 | Y |
| F036500 | Metagenome / Metatranscriptome | 170 | Y |
| F036823 | Metagenome / Metatranscriptome | 169 | Y |
| F049535 | Metagenome / Metatranscriptome | 146 | N |
| F063914 | Metagenome | 129 | Y |
| F064074 | Metagenome / Metatranscriptome | 129 | Y |
| F077953 | Metagenome / Metatranscriptome | 117 | N |
| F085295 | Metagenome / Metatranscriptome | 111 | Y |
| F086244 | Metagenome | 111 | Y |
| F092006 | Metagenome / Metatranscriptome | 107 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208578_100043 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1540 | Open in IMG/M |
| Ga0208578_100079 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1312 | Open in IMG/M |
| Ga0208578_100104 | All Organisms → cellular organisms → Bacteria | 1236 | Open in IMG/M |
| Ga0208578_100241 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1028 | Open in IMG/M |
| Ga0208578_100342 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 925 | Open in IMG/M |
| Ga0208578_100378 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 899 | Open in IMG/M |
| Ga0208578_100501 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 835 | Open in IMG/M |
| Ga0208578_100532 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 817 | Open in IMG/M |
| Ga0208578_100648 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 770 | Open in IMG/M |
| Ga0208578_100703 | Not Available | 750 | Open in IMG/M |
| Ga0208578_100749 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 738 | Open in IMG/M |
| Ga0208578_100990 | Not Available | 682 | Open in IMG/M |
| Ga0208578_101185 | All Organisms → cellular organisms → Bacteria | 646 | Open in IMG/M |
| Ga0208578_101326 | All Organisms → cellular organisms → Bacteria | 623 | Open in IMG/M |
| Ga0208578_101327 | Not Available | 623 | Open in IMG/M |
| Ga0208578_101344 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 621 | Open in IMG/M |
| Ga0208578_101349 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 620 | Open in IMG/M |
| Ga0208578_101835 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 559 | Open in IMG/M |
| Ga0208578_101840 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 558 | Open in IMG/M |
| Ga0208578_101841 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 558 | Open in IMG/M |
| Ga0208578_101886 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 553 | Open in IMG/M |
| Ga0208578_102089 | Not Available | 535 | Open in IMG/M |
| Ga0208578_102265 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 524 | Open in IMG/M |
| Ga0208578_102304 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 521 | Open in IMG/M |
| Ga0208578_102377 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 515 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208578_100043 | Ga0208578_1000431 | F085295 | MNGLSAQGLADLAGVTEAEIRRLVDLGILVARDGAGPFLETDVQKVRLATACEQAGLPMDGIAAAVQQGRLSFAFLEAAPYRRWAVRSARTYRQVSQEAGVPLELLGSFLEAIGFARMAPDEPIREDELEVVPLLQLGLSSGILDQVWSTRLGRGYAE |
| Ga0208578_100079 | Ga0208578_1000791 | F024523 | RLESNEEVAEVCNLIHGAGYDHPFQGISPGYVPEKDWLSFLKYVKHGPNIDPEQGRDYIDAADRWRQDHGYPLPPDDAGYVSLVERTLLR |
| Ga0208578_100104 | Ga0208578_1001041 | F077953 | MRTLIHAGLYAFGGAAWTFLALRIQEHFFWPENLTPRQKQRLDSAKWWLTLMGAIAGLLVSA |
| Ga0208578_100241 | Ga0208578_1002413 | F019013 | QDESVEKRLSDLEKRVTALEKASPLSSPLSAASPTPASATKSPLELVAWDARRVRGEDSYDKYEISLTLKNNSDKDIKFIDATVQFADLLGSHIYDITFNPDHLIPAEQSITDTGQYPINQLMPEQARLAQMKKEDVKATLVVSKLVFTDNSIGQYAP |
| Ga0208578_100342 | Ga0208578_1003422 | F063914 | RGIEFILEIGILLFGTVLYLKRNSAIARKIGIIIFVAALVLIQTSNTFVRRPPTSDNAFAITALVFYTVFAIIAFLLEKRRAISS |
| Ga0208578_100378 | Ga0208578_1003781 | F012145 | MANSLEKPSSTAVRQIRPPPLSQHMRELASRPGAWLVVARNMIPVVGIYAFGWSAAVSVFNYWFDGLTALAAIVAALIPRALRETQSKKDHATLV |
| Ga0208578_100501 | Ga0208578_1005011 | F002517 | VGPNGEKIVSETVRMLSQLPTLGAPRLVTLRYSDIGGKEEDARERKSGLRNPAYVHGIVVKMGAQQDFSFFDRFEELLFDRIGTPPRNSAANVEQIRQSTQERIQDTIFEMNKFVVDKNPMVGLAWKDISDAVQAKFKDVPEPARTKQIEDLTRQTYYVYIFLSLYARMDDLRSRGILSPNDEMILGWKRSWLPNLMTSELGRWMLENNLMEYYSEPMIKDLREAAGATGSSPTPPANTR |
| Ga0208578_100532 | Ga0208578_1005321 | F049535 | MRRHTADSRASTKSIHKSARSLRRLASLLSTFAVVAGVQRQTSRSIKPRERDLRCLRLFFGPVFNEANEPSSTCRLRFQR |
| Ga0208578_100648 | Ga0208578_1006482 | F001757 | MMRVLKRLQDKATTGAGKKLVLPEPRRVRFLIRGEGPVSAGAVTIECCPESTKAGKFWMELATIAVPADYGLAQYYTEEASGLFRARISRPVSNGTVTVTPLVSRGRPDRPDRTKVV |
| Ga0208578_100703 | Ga0208578_1007031 | F018755 | MTIYPGAGYGEHRRADAQTSCDSVGLSDPGDHRTEPLLITGNKTRDAALGEPRIRAGEIIGWRVWNLCNGLLCSVFVAYTWHPGVFERSSSKRCGYHNPGYHAFRDIEQAERQVSTFAAYKAWPCVIGSVAMWGEVIEHQHGWRSEYAAVRSITKITGDRDFSTKQQLLLDLREKYGCALVTEL |
| Ga0208578_100749 | Ga0208578_1007492 | F036823 | MKMKSLKILSAITIALFVLGTTLYAQGTDSRIGSIARERVEHGATQATAITKAEAEKKYPPPANG |
| Ga0208578_100990 | Ga0208578_1009901 | F092006 | VKITSTRAAFARPGPGVIPFPDVVAPMQPSDSLPPSATTPVPLAAAYLDADACSVPREADDTCARLRAVRRRRVTGSPQDRDVSRKGEGLPGYGAVLFIRAMVEHPAGYGPLLAHHTEKPLLPSGKSGPWASGKDIGFGAACPMARTFACLRIAEAISGPVARLATGSGGLTLSRAGFAPAGRQTTFHGGIVSSSPN |
| Ga0208578_101185 | Ga0208578_1011851 | F001584 | MWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYTGFATDGHGGSSRVTFGFDKNGRMTFPDSFDE |
| Ga0208578_101326 | Ga0208578_1013261 | F012252 | MKTYSYNSRRGLVLMTACLLFFSTYAAGQAMSSDAQSRRAGAGGFTVVRPVEGAARLIIRRDPALGNYLIAHLRVDGVTVAAIGYGRTYEGFLRPGRHVLSLLPTPNPNWRNAPGMILDVRSGETYNFTAIGDSGYLILLPPEVAQERPRGR |
| Ga0208578_101327 | Ga0208578_1013271 | F064074 | DCLEAAQLADEVISRLNRNNRDNRLALALRDYTIASQACRREASP |
| Ga0208578_101327 | Ga0208578_1013272 | F007444 | MRSKPLAKLLLVLAGLLLVVAPAARAAETLVLTCTVCTKLVVTGKDLPANSEVRVGVVDVKTGQETTGQFTVATDANGAFVKTIPMDLGEHPALESTVWKKDGSVLVVAAHTRFTAPCKPEDTLAFTGSHTPLLGGLGLALLAAGGLLVRGSRRRAYHPAH |
| Ga0208578_101344 | Ga0208578_1013441 | F019873 | TKRFQSNSKRTLRIFRRSRRRHDPMLVLNMALFNFTDGWNRVLSRDQYARFSV |
| Ga0208578_101349 | Ga0208578_1013491 | F016035 | MKQLIGLVHLSALTALYVALYGAHRQTQATEATHNRYPKKPDRQAELEGELVLLGLDGTVIAREVNLSPHGM |
| Ga0208578_101732 | Ga0208578_1017321 | F022950 | VWPHRNGASVGLTATFSQIADEFLACVKLRARRLATIEIAHQTNAQRNVVQIITVHVPAVDLTAPAIAHFNLAVSSGCSVPDHEMIGETILHPAHTPMVIIEDARVALPRAAIM |
| Ga0208578_101835 | Ga0208578_1018351 | F036500 | MPDEFRNLRIVHNRLSSQQLFRILNLRGWSERKLAGRSGIVPSVVSAHLSGKRAIRSHHLAAYLRVLDRPERAMFLDAWLRDNLDDELIADLLDGTKTDSKPSLQENQRRMLDWWATAIASDSALAKIFSRFSTKAGFKFPSVLLLPVSTAAAQLQSWLLEKASGIWYLVRCLCSRV |
| Ga0208578_101840 | Ga0208578_1018402 | F024391 | MQSGFQNTWHFTAKCGFTLLLFQWCGCAHLASVKERPARLPARLPAEEPLESAKKYLTAAEHEQPLPALGHDLLAAKIS |
| Ga0208578_101841 | Ga0208578_1018411 | F016050 | MDIQLDANVENQDRAKCGKNEAGGMKSFVCRMRKHVGNRAAYDRPDDAERDCPENRHVHVHHWIAE |
| Ga0208578_101886 | Ga0208578_1018861 | F034864 | MRAEGFLLTIAQAPAYIPGGAGSFWKLIGWLLLVIGFLIALWLISAGLRWIIEKIAAAFRKK |
| Ga0208578_102089 | Ga0208578_1020891 | F001947 | VSGRKTRRPGEIAIPPGSGFGKAHRCTCWPRPDNSSPCTPQTCDWRCRACRAYGRPFYSRDDLQYLEHGTGSLAAELARLWRAKGAMKGRPAQEGVGDELDGWRALPRGEAGLAARRRHSRTVTDLYYPGLQDHPPGRDKPNDG |
| Ga0208578_102200 | Ga0208578_1022001 | F000303 | HVFGVFKSKLQLIHVSLDVTSLAIEELPTVIKEDVEEYLANNPTSAAARLRPRMGMAGDDIWLAFIGREVRRGASGLGNTPREALDDFNRNFMEPLISRNGSEPH |
| Ga0208578_102265 | Ga0208578_1022651 | F006477 | MTVLIPLIVAVALGLAFVAYKHPAAYRVMFIFALPVLVVGGFLVLAIKVGDLNGSIKSVYHELPNIRKYALSDQLPYQIGRLYNVGQFLKVFLIYYISGFAYLVFLLFLRDILDLAKDRHHTPT |
| Ga0208578_102304 | Ga0208578_1023042 | F086244 | MGYFKTNWRRTTLFLGGWTLVSVIFAAISYAAAIGENNKEFGFVSALRLNLVQFYLWAI |
| Ga0208578_102377 | Ga0208578_1023771 | F004992 | MSNETPAAIDPDMFAAVFSQNWDNARHIKSERISFMNAYSVICAGVLALLQSVQASDLIRIALLFFMTLFSLIGLLTSLRLKGELEECLAKIEAMSVQARVNDFVALGQLEGRSSRYPRFRWIFPIFYAMTTVGFITL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |