Metagenome / Metatranscriptome Family F077953

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F077953
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	64 residues
Representative Sequence	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Number of Associated Samples	102
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	58.97 %
% of genes near scaffold ends (potentially truncated)	35.90 %
% of genes from short scaffolds (< 2000 bps)	82.05 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (26.496 % of family members)
Environment Ontology (ENVO)	Unclassified (43.590 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (33.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.62% β-sheet: 0.00% Coil/Unstructured: 35.38%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF08410	DUF1737	3.42
PF01177	Asp_Glu_race	1.71
PF00011	HSP20	1.71
PF04107	GCS2	1.71
PF12833	HTH_18	0.85
PF00346	Complex1_49kDa	0.85
PF11185	DUF2971	0.85
PF07690	MFS_1	0.85
PF13676	TIR_2	0.85
PF00487	FA_desaturase	0.85
PF04355	SmpA_OmlA	0.85
PF01192	RNA_pol_Rpb6	0.85
PF02518	HATPase_c	0.85
PF00498	FHA	0.85
PF03631	Virul_fac_BrkB	0.85
PF01011	PQQ	0.85
PF01850	PIN	0.85
PF01740	STAS	0.85
PF07799	DUF1643	0.85
PF13239	2TM	0.85
PF14566	PTPlike_phytase	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	1.71
COG0649	NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)	Energy production and conversion [C]	0.85
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.85
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.85
COG1758	DNA-directed RNA polymerase, subunit K/omega	Transcription [K]	0.85
COG2913	Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex	Cell wall/membrane/envelope biogenesis [M]	0.85
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.85
COG3261	Ni,Fe-hydrogenase III large subunit	Energy production and conversion [C]	0.85
COG4333	Uncharacterized conserved protein, DUF1643 domain	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	44.44 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	44.44 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	38.46 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.71 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	38.46 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.71 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	38.46 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.71 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	38.46 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.71 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	38.46 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1.71 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8888992	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4959	Open in IMG/M
2166559005\|cont_contig68057	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	754	Open in IMG/M
2170459004\|F62QY1Z01D4YIO	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
2170459005\|F1BAP7Q02HRDPP	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
2170459007\|GJE5RH003F9J8S	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
2170459009\|GA8DASG01AP5YG	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
2170459009\|GA8DASG01BT26U	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
2170459009\|GA8DASG02IQ8UR	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	526	Open in IMG/M
2199352025\|deepsgr__Contig_174168	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100309183	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300000891\|JGI10214J12806_10705340	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300000956\|JGI10216J12902_101809028	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300001431\|F14TB_102553693	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300002914\|JGI25617J43924_10087673	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300005167\|Ga0066672_10029542	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2980	Open in IMG/M
3300005172\|Ga0066683_10465107	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300005289\|Ga0065704_10548402	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300005295\|Ga0065707_10302234	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300005471\|Ga0070698_101650204	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005610\|Ga0070763_10399061	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	773	Open in IMG/M
3300007255\|Ga0099791_10031772	All Organisms → cellular organisms → Bacteria	2320	Open in IMG/M
3300009143\|Ga0099792_10252500	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300012019\|Ga0120139_1069326	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300012198\|Ga0137364_11451449	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012199\|Ga0137383_10301481	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300012200\|Ga0137382_10181538	All Organisms → cellular organisms → Bacteria	1440	Open in IMG/M
3300012201\|Ga0137365_10332923	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300012206\|Ga0137380_10359197	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1298	Open in IMG/M
3300012207\|Ga0137381_10288897	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1427	Open in IMG/M
3300012207\|Ga0137381_10484463	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300012209\|Ga0137379_11477003	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	581	Open in IMG/M
3300012285\|Ga0137370_10243504	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300012350\|Ga0137372_10806498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	673	Open in IMG/M
3300012361\|Ga0137360_10111114	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2116	Open in IMG/M
3300012361\|Ga0137360_10577584	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300012361\|Ga0137360_11125925	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300012362\|Ga0137361_10157454	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2035	Open in IMG/M
3300012582\|Ga0137358_10161107	All Organisms → cellular organisms → Bacteria	1529	Open in IMG/M
3300012685\|Ga0137397_11193717	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	548	Open in IMG/M
3300012884\|Ga0157300_1075514	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300012897\|Ga0157285_10147755	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	696	Open in IMG/M
3300012917\|Ga0137395_10394078	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300012922\|Ga0137394_10248754	All Organisms → cellular organisms → Bacteria	1520	Open in IMG/M
3300012923\|Ga0137359_10354293	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300012923\|Ga0137359_11564638	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	547	Open in IMG/M
3300012925\|Ga0137419_10655524	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	848	Open in IMG/M
3300012929\|Ga0137404_10013564	All Organisms → cellular organisms → Bacteria	5721	Open in IMG/M
3300012930\|Ga0137407_10186830	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1852	Open in IMG/M
3300012930\|Ga0137407_11997831	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	553	Open in IMG/M
3300018000\|Ga0184604_10050789	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300018027\|Ga0184605_10059610	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300018052\|Ga0184638_1105619	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300018052\|Ga0184638_1172605	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	772	Open in IMG/M
3300018056\|Ga0184623_10377893	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	629	Open in IMG/M
3300018067\|Ga0184611_1167020	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	781	Open in IMG/M
3300018072\|Ga0184635_10087949	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300018073\|Ga0184624_10070368	All Organisms → cellular organisms → Bacteria	1456	Open in IMG/M
3300018074\|Ga0184640_10286322	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300018081\|Ga0184625_10439078	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300018433\|Ga0066667_10308795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1234	Open in IMG/M
3300018468\|Ga0066662_10014310	All Organisms → cellular organisms → Bacteria	4242	Open in IMG/M
3300019356\|Ga0173481_10377888	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	686	Open in IMG/M
3300019789\|Ga0137408_1082166	All Organisms → cellular organisms → Bacteria	6974	Open in IMG/M
3300019874\|Ga0193744_1024958	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300019877\|Ga0193722_1000071	All Organisms → cellular organisms → Bacteria	21938	Open in IMG/M
3300019877\|Ga0193722_1000547	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	8413	Open in IMG/M
3300019881\|Ga0193707_1016179	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2493	Open in IMG/M
3300019883\|Ga0193725_1008065	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3008	Open in IMG/M
3300019885\|Ga0193747_1008769	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2437	Open in IMG/M
3300019886\|Ga0193727_1093913	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300019887\|Ga0193729_1015295	All Organisms → cellular organisms → Bacteria	3395	Open in IMG/M
3300019887\|Ga0193729_1035963	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2067	Open in IMG/M
3300019890\|Ga0193728_1355099	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524	Open in IMG/M
3300019996\|Ga0193693_1025118	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300020001\|Ga0193731_1008959	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2559	Open in IMG/M
3300020004\|Ga0193755_1035241	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300020005\|Ga0193697_1083976	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300020170\|Ga0179594_10065769	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300020170\|Ga0179594_10287237	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	622	Open in IMG/M
3300021078\|Ga0210381_10165235	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300021344\|Ga0193719_10013943	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3396	Open in IMG/M
3300021411\|Ga0193709_1083837	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300021510\|Ga0222621_1004775	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2343	Open in IMG/M
3300022534\|Ga0224452_1054356	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1192	Open in IMG/M
3300022756\|Ga0222622_11042187	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	601	Open in IMG/M
3300024288\|Ga0179589_10186325	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300025915\|Ga0207693_11462545	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300026351\|Ga0257170_1014529	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300026359\|Ga0257163_1004951	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1893	Open in IMG/M
3300026374\|Ga0257146_1024604	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	979	Open in IMG/M
3300026481\|Ga0257155_1077646	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300026497\|Ga0257164_1018453	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300026656\|Ga0208578_100104	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300027655\|Ga0209388_1011305	All Organisms → cellular organisms → Bacteria	2408	Open in IMG/M
3300027684\|Ga0209626_1092361	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	781	Open in IMG/M
3300027889\|Ga0209380_10518481	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	694	Open in IMG/M
3300028718\|Ga0307307_10058930	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300028719\|Ga0307301_10106123	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	892	Open in IMG/M
3300028768\|Ga0307280_10220685	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300028791\|Ga0307290_10020561	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2301	Open in IMG/M
3300028824\|Ga0307310_10280413	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300028878\|Ga0307278_10002883	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	8415	Open in IMG/M
3300028878\|Ga0307278_10183301	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300028885\|Ga0307304_10044751	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300028885\|Ga0307304_10570553	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300030844\|Ga0075377_10050713	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300030848\|Ga0075388_11637283	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	755	Open in IMG/M
3300030855\|Ga0075374_11462838	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300030987\|Ga0308155_1011549	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300031057\|Ga0170834_105059902	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	908	Open in IMG/M
3300031099\|Ga0308181_1041533	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300031128\|Ga0170823_12215515	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300031128\|Ga0170823_13813290	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	639	Open in IMG/M
3300031231\|Ga0170824_112591453	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1019	Open in IMG/M
3300031446\|Ga0170820_12990096	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	914	Open in IMG/M
3300031474\|Ga0170818_100385253	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	831	Open in IMG/M
3300031474\|Ga0170818_113079332	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.29%
Host-Associated	Host-Associated	0.85%
Engineered	Engineered	0.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.32%
Aquatic	Environmental → Aquatic	11.97%
Plants	Host-Associated → Plants	0.85%
Modeled	Engineered → Modeled	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.32%
Sediment	Environmental → Aquatic → Sediment	11.11%
Freshwater	Environmental → Aquatic → Freshwater	0.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.85%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.11%
Loam	Environmental → Terrestrial → Soil → Loam	5.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	53.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.56%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.13%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	5.13%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.56%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.71%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459004	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm (2)	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019874	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026656	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN577 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030848	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_01445440	2088090015	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPENLTPHQQRRLDSAKWWITLMGALVGLLVSAYSN
cont_0057.00004820	2166559005	Simulated	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPQDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
E4B_08448420	2170459004	Grass Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPQDLTPHQQRRLDSAKWWITLMGXLVGLLVSAYSNWTPHVYEVRPXKII
E41_11968390	2170459005	Grass Soil	MRTLIHASFYTFGGAAWTFLALHLQEHSLAGRFNTHQQRRLDSAKWWITLMGAIVGLLVP
L02_07146940	2170459007	Grass Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPQDLTPHQQRRLDSAKWWITLMGAIVGLPVSAYSN
F47_09417430	2170459009	Grass Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPQHLTPHQQRRLDSAKGWITLMGAIVGLLVSAYSN
F47_10862490	2170459009	Grass Soil	TFGGAAWTFLALHIQEHFFWPQDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
F47_05602050	2170459009	Grass Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPQDLTPHQQRRLDSAKWWITLMGALVGLLVSAYSN
deepsgr_02946510	2199352025	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPKDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
INPhiseqgaiiFebDRAFT_1003091832	3300000364	Soil	MRTLIHAGLYAFGGAAWTFLALHIQEHFFWPENLTPRQKQRLDSAKWWLTLMGAIAGL
JGI10214J12806_107053402	3300000891	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPENLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN*
JGI10216J12902_1018090282	3300000956	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPADLTPPQQRRLDSAKWWITLMGAIVGLLVSAYSN*
F14TB_1025536931	3300001431	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPENLTPRQKQQLEIAKWRITLMGAFAGVLVSVFSN*
JGI25617J43924_100876732	3300002914	Grasslands Soil	MRTLIHASFYTFGGAAWTFLALHLQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN*
Ga0066672_100295425	3300005167	Soil	MRTLIHAGFYAFGGAAWTFLALHIQEHFFWPENLTPHQQRRLDSAKWWITLMGAIAGLLVSAYSN*
Ga0066683_104651073	3300005172	Soil	VRTLVHSVLYALGGAAWTFLALLIQEHFFWPDDLTPRQQERLQIASRWITLMGAIAGLLISVYSN*
Ga0065704_105484022	3300005289	Switchgrass Rhizosphere	MRTLIHASFYAFGGAAWTFLALHIQEHFFWPENLTPRQKQRLDSAKWWLTLMGAIAGLLVSAYSN*
Ga0065707_103022343	3300005295	Switchgrass Rhizosphere	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN*
Ga0070698_1016502041	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLIHAGFYAFGGAAWTFLALRIQEHFFWPKNLTPHQQRRLDSAKWWITLMGAIAGLLVSAYSN*
Ga0070763_103990613	3300005610	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSK*
Ga0099791_100317724	3300007255	Vadose Zone Soil	MRTLIHAGLYAFGGAAWTFLALHIQEHFFWPENLTPRQKQRLEIAKWWITLMGAFAGVLVSVFYSD*
Ga0099792_102525003	3300009143	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFLALHLQEHFFWPKDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYLN*
Ga0120139_10693262	3300012019	Permafrost	MRTLIHASFYTFGGAAWTFLALHIQEYFFWPKDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN*
Ga0137364_114514492	3300012198	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPKDLTPHQQRRLDSAKWWITLMGA
Ga0137383_103014813	3300012199	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAVVGLLVSAYSN*
Ga0137382_101815382	3300012200	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPADLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN*
Ga0137365_103329231	3300012201	Vadose Zone Soil	MRTLIHAGLYAFGGAAWTFLALRIQEHFFWPENLTPRQKQRLDSAKWWLTLMGAIAGLLVSAYSN*
Ga0137380_103591973	3300012206	Vadose Zone Soil	AGGMRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAVVGLLVSAYSN*
Ga0137381_102888971	3300012207	Vadose Zone Soil	MRTLIHAGLYAFGGAAWTFLALHIQEHFFWPENLTPHQQRRLDSAKWWITLMGAIAGLLVSAYSN*
Ga0137381_104844632	3300012207	Vadose Zone Soil	VRTLIHSGLYAFGGAAWTFLSLRIQEHFFWPKDLTPHQQCRLDSGKWWITLMGAIAGLLVSAYSN*
Ga0137379_114770031	3300012209	Vadose Zone Soil	NKCIVTRSDDRAGGMRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAVVGLLVSAYSN*
Ga0137370_102435042	3300012285	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPENLTPHQQRRLDSAKWWITLMGATVGLLVSAYSN*
Ga0137372_108064981	3300012350	Vadose Zone Soil	RTLIHASFYTFGGAAWTFLALHLQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN*
Ga0137360_101111145	3300012361	Vadose Zone Soil	IVTRSDDRAGGMRTLIHASFYTFGGAAWTFLALHLQEHFFWPKDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN*
Ga0137360_105775841	3300012361	Vadose Zone Soil	GGAAWTFLALHIQEHFFWPENLTPRQKQRLEIAKWWITLMGAFAGVLVSVFYSD*
Ga0137360_111259252	3300012361	Vadose Zone Soil	MRTLIHAGLYAFGGAAWTFLALHIQEHFFWPENLTPRQKQRLEIAKWWITLMG
Ga0137361_101574543	3300012362	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPKDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN*
Ga0137358_101611073	3300012582	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWRITLMGAIVGLLVSAYSN*
Ga0137397_111937172	3300012685	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPADLTPHQQRRMDSAKWWITLMGTVVGLLVSA*
Ga0157300_10755141	3300012884	Soil	MRTLIHASFYTFGGAAWTFWALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN*
Ga0157285_101477552	3300012897	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPENLTPHQQRRLDSAKWWITLMGALVGLLVSAYSN*
Ga0137395_103940782	3300012917	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPPQQRRLDSAKWWITRMGAIVGLLVSAYSN*
Ga0137394_102487542	3300012922	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIAGLLVSAYSN*
Ga0137359_103542932	3300012923	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPGDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN*
Ga0137359_115646383	3300012923	Vadose Zone Soil	IHAGLYAFGGAAWTFLALHIQEHFFWPQNLTPHQQRRLDSAKRWITLMGAIAGLLVSAYSN*
Ga0137419_106555243	3300012925	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYLN*
Ga0137404_100135648	3300012929	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFFALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN*
Ga0137407_101868304	3300012930	Vadose Zone Soil	RTLIHASFYTFGGAAWTFLALHIQEYFFWPKDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN*
Ga0137407_119978311	3300012930	Vadose Zone Soil	SFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKRWITLMGAIAGLLVSAYSN*
Ga0184604_100507892	3300018000	Groundwater Sediment	MRTLIHASFYTFGGAAWTFLALHLQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0184605_100596103	3300018027	Groundwater Sediment	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAVVGLLVSAYSN
Ga0184638_11056192	3300018052	Groundwater Sediment	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0184638_11726051	3300018052	Groundwater Sediment	ESRQSGGCEQGTGKVRTLIHASCYALGGAAWTFLALCIQERFFWPKDLTSHQQRRLDSAKWWITLMGAIAGLLVSGYSN
Ga0184623_103778933	3300018056	Groundwater Sediment	RSDDRAGGMRTLIHASFYTFGGAAWTFLALHMQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0184611_11670202	3300018067	Groundwater Sediment	MRTLIHASFYTLGGAAWTFLALHIQEYFFWPKDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0184635_100879493	3300018072	Groundwater Sediment	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGATVGLLVSAYSN
Ga0184624_100703681	3300018073	Groundwater Sediment	AGGMRTLIHASFYTFGGAAWTFLALHIQEYFFWPKDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0184640_102863221	3300018074	Groundwater Sediment	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPKDLTPHQQRRLDSGKWWITLMGAIVGLLVSAYSN
Ga0184625_104390783	3300018081	Groundwater Sediment	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGA
Ga0066667_103087952	3300018433	Grasslands Soil	MRTLIHAGFYAFGGAAWTFLALHIQEHFFWPENLTPHQQRRLDSAKWWITLMGAIAGLLVSAYSN
Ga0066662_100143102	3300018468	Grasslands Soil	MRTLIHAGFYAFGGAAWTFLALHIQEHFFWPENLTPHQQHRLDSAKWWITLMGAIAGLLVSAYSN
Ga0173481_103778882	3300019356	Soil	MRTLIHASFYTFGGAAWTFWALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0137408_10821664	3300019789	Vadose Zone Soil	MRTLIHASFYTFGGAAWTFFALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0193744_10249583	3300019874	Soil	MIGAGGMRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAHSN
Ga0193722_10000711	3300019877	Soil	LIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0193722_10005471	3300019877	Soil	MIGAGGTRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLGSAKWWITLMGAIVGLLVSDYSN
Ga0193707_10161794	3300019881	Soil	ASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQRRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0193725_10080654	3300019883	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPADLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0193747_10087693	3300019885	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSS
Ga0193727_10939132	3300019886	Soil	MIGAVGMRTLIHASFYTFGGAAWTFLALHMQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIAGLLVSAYSN
Ga0193729_10152954	3300019887	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTTHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0193729_10359634	3300019887	Soil	MIGPGGMRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGALAGLLVSAYSN
Ga0193728_13550991	3300019890	Soil	HASFYTFGGAAWTFLALHMQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0193693_10251182	3300019996	Soil	MRTLIHASFYTFGGAAWTFLALHMQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0193731_10089591	3300020001	Soil	IHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQRRRLDSAKWWITLMGAIVGLLVSAYS
Ga0193755_10352414	3300020004	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAMVGLLVSAYSN
Ga0193697_10839762	3300020005	Soil	MIGAGGMRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMEQ
Ga0179594_100657691	3300020170	Vadose Zone Soil	MRTLIHAGLYAFGGAAWTFLALHIQEHFFWPENLTPRQKQRLEIAKWWITLMGAFAGV
Ga0179594_102872372	3300020170	Vadose Zone Soil	RTLIHAGLYAFGGAAWTFLALHIQEHFFWPENLTPRQKQRLDSAKWWLTLMGAIAGLLVSAYSN
Ga0210381_101652352	3300021078	Groundwater Sediment	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMEQ
Ga0193719_100139434	3300021344	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPENLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0193709_10838372	3300021411	Soil	MIGAGGMRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0222621_10047751	3300021510	Groundwater Sediment	FGGAAWTFLALHIQEYFFWPKDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0224452_10543563	3300022534	Groundwater Sediment	GGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0222622_110421872	3300022756	Groundwater Sediment	GAGGTRTIIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLGSAKWWITLMGAIVGLLVSDYSN
Ga0179589_101863251	3300024288	Vadose Zone Soil	RTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0207693_114625452	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLIHASFYTFGGAAWTFLALHIQEYFFWPKDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0257170_10145292	3300026351	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPKDLTPPQQRRLDSAKWWITLMGALVGLLVSAYSN
Ga0257163_10049513	3300026359	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAY
Ga0257146_10246042	3300026374	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRSDSAKWWITLMGAIVGLLVSAYSN
Ga0257155_10776461	3300026481	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPGDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0257164_10184532	3300026497	Soil	MRTLIRTSFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0208578_1001041	3300026656	Soil	MRTLIHAGLYAFGGAAWTFLALRIQEHFFWPENLTPRQKQRLDSAKWWLTLMGAIAGLLVSA
Ga0209388_10113053	3300027655	Vadose Zone Soil	MRTLIHAGLYAFGGAAWTFLALHIQEHFFWPENLTPRQKQRLEIAKWWITLMGAFAGVLVSVFYSD
Ga0209626_10923612	3300027684	Forest Soil	MRTLIHASFYTFGGAAWTFLALHVQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAY
Ga0209380_105184812	3300027889	Soil	MRTLIHASFYTFGGAAWTFLALQIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAY
Ga0307307_100589303	3300028718	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPADLTPHQQRRLDSAKWWITLMGAVVGLLVSAYSN
Ga0307301_101061232	3300028719	Soil	IGAGGMRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0307280_102206852	3300028768	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIAGLLVSAYSN
Ga0307290_100205614	3300028791	Soil	IGAGGMRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAVVGLLVSAYSN
Ga0307310_102804131	3300028824	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAVVG
Ga0307278_100028837	3300028878	Soil	MRTLIHAGLYAFGGAAWTFLALRIQEHFFWPENLTPRQKQRLDSAKWWLTLMGAIAGLLVSAYSN
Ga0307278_101833012	3300028878	Soil	MRTLIHASFYTFGGAAWTFLALHMQEHFFWPKDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0307304_100447511	3300028885	Soil	MRTLIHASFYTFGGAAWTFLALHLQEHFFWPKDLTPHQQRRLDSAKWWITLM
Ga0307304_105705531	3300028885	Soil	MRTLIHASFYTFGGAAWTFLALHLQEHFFWPKDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0075377_100507131	3300030844	Soil	MRTLIHASFYTFGGAVWTFLALHIQEHFFWPADLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0075388_116372831	3300030848	Soil	MRTLIHASFYTFGGAAWTFLALHLQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYLN
Ga0075374_114628381	3300030855	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPQDLTPHQQRRLDSAKWWITLMGAI
Ga0308155_10115492	3300030987	Soil	MRTLIHASFYTLGGAAWTFLALHMQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0170834_1050599021	3300031057	Forest Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLL
Ga0308181_10415333	3300031099	Soil	MRTLIHASFYTFGGAAWTFLALHIQEHFFWPADLTPHQQRRLDSAKWWITLMGAIVG
Ga0170823_122155151	3300031128	Forest Soil	MRTLIHASFYTFGGAAWTFLALHLQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAY
Ga0170823_138132901	3300031128	Forest Soil	MRTLIHASFYTFAGAAWTFLALHIQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSA
Ga0170824_1125914531	3300031231	Forest Soil	IVTRSDDRAGGMRTLIHASFYTFGGAAWTFLALHLQEHFFWPEDLTPHQQRRLDSAKWWITLMGAIVGLLVSAYSN
Ga0170820_129900962	3300031446	Forest Soil	GDCQQIAVEMRTLIHAVFYAFGGAAWTFLVLHIHENFFLPQDLTRRQQQRLERVKWWLTLMGGIAGLLVSAYSN
Ga0170818_1003852532	3300031474	Forest Soil	LVVDLRSVRHDQSGDCQQIAVEMRTLIHAVFYAFGGAAWTFLVLHIHENFFLPQDLTRRQQQRLERVKWWLTLMGGIAGLLVSAYSN
Ga0170818_1130793322	3300031474	Forest Soil	MRTLIHAGLYAFGGAAWTFLALHIQEHFFWPENLTPRQKQRLDSAKWWLTLMGAIAGLLVSAYSN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077953

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences