Metagenome Family F086244

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086244
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	66 residues
Representative Sequence	MGNLKINWRRAALLFGGWTLVSVIFAAISYAAAIGENNKEFGFVSALRLNLVQFYLWAILAPLLFRFSRR
Number of Associated Samples	94
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	36.94 %
% of genes near scaffold ends (potentially truncated)	95.50 %
% of genes from short scaffolds (< 2000 bps)	97.30 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.297 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (25.225 % of family members)
Environment Ontology (ENVO)	Unclassified (34.234 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.964 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.20% β-sheet: 0.00% Coil/Unstructured: 39.80%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF08240	ADH_N	46.85
PF01894	UPF0047	2.70
PF02517	Rce1-like	2.70
PF07992	Pyr_redox_2	1.80
PF03551	PadR	1.80
PF03781	FGE-sulfatase	1.80
PF01593	Amino_oxidase	0.90
PF07080	DUF1348	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	2.70
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	2.70
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	2.70
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	1.80
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.80
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.80
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.80
COG3558	Uncharacterized conserved protein, nuclear transport factor 2 (NTF2) superfamily	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.30 %
Unclassified	root	N/A	2.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.30 %
Unclassified	root	N/A	2.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.30 %
Unclassified	root	N/A	2.70 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	37.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.50 %
Unclassified	root	N/A	2.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	36.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.50 %
Unclassified	root	N/A	2.70 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	27.03 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	3.60 %
Unclassified	root	N/A	2.70 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	27.03 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	3.60 %
Unclassified	root	N/A	2.70 %
Anaerolineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	27.03 %
Stenotrophomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas	3.60 %
Unclassified	root	N/A	2.70 %
Anaerolineales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineales incertae sedis	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	27.03 %
Unclassified	root	N/A	2.70 %
Stenotrophomonas maltophilia group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → Stenotrophomonas maltophilia group	1.80 %
Candidatus Desulfolinea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineales incertae sedis → Candidatus Desulfolinea	0.90 %
Stenotrophomonas rhizophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → Stenotrophomonas rhizophila	0.90 %
unclassified Stenotrophomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → unclassified Stenotrophomonas	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	27.03 %
Unclassified	root	N/A	2.70 %
Stenotrophomonas maltophilia	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → Stenotrophomonas maltophilia group → Stenotrophomonas maltophilia	1.80 %
Candidatus Desulfolinea nitratireducens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineales incertae sedis → Candidatus Desulfolinea → Candidatus Desulfolinea nitratireducens	0.90 %
Stenotrophomonas sp. LM091	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → unclassified Stenotrophomonas → Stenotrophomonas sp. LM091	0.90 %
Stenotrophomonas rhizophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → Stenotrophomonas rhizophila	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17358221	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
2088090014\|GPIPI_17446479	All Organisms → cellular organisms → Bacteria	2318	Open in IMG/M
2170459011\|GI3SL7401CEV46	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300000550\|F24TB_10249667	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	509	Open in IMG/M
3300000559\|F14TC_100288757	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	528	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1052660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineales incertae sedis → Candidatus Desulfolinea → Candidatus Desulfolinea nitratireducens	637	Open in IMG/M
3300000955\|JGI1027J12803_102552737	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	537	Open in IMG/M
3300000955\|JGI1027J12803_103781894	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	589	Open in IMG/M
3300000955\|JGI1027J12803_108021071	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300000956\|JGI10216J12902_120083344	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300002568\|C688J35102_119814513	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	782	Open in IMG/M
3300004153\|Ga0063455_100367808	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	829	Open in IMG/M
3300004157\|Ga0062590_103017937	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
3300004480\|Ga0062592_101655314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → Stenotrophomonas maltophilia group → Stenotrophomonas maltophilia	620	Open in IMG/M
3300005187\|Ga0066675_11446781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → Stenotrophomonas maltophilia group → Stenotrophomonas maltophilia	502	Open in IMG/M
3300005290\|Ga0065712_10253915	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300005294\|Ga0065705_10164764	All Organisms → cellular organisms → Bacteria	1747	Open in IMG/M
3300005294\|Ga0065705_11157448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300005336\|Ga0070680_100919539	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300005339\|Ga0070660_101092765	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300005340\|Ga0070689_101060027	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300005345\|Ga0070692_10082560	All Organisms → cellular organisms → Bacteria	1733	Open in IMG/M
3300005365\|Ga0070688_100422848	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300005446\|Ga0066686_11072627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → Stenotrophomonas rhizophila	519	Open in IMG/M
3300005466\|Ga0070685_11204455	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300005553\|Ga0066695_10308647	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300005566\|Ga0066693_10108209	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300005568\|Ga0066703_10574915	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	659	Open in IMG/M
3300005569\|Ga0066705_10570708	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300005577\|Ga0068857_102513082	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300005713\|Ga0066905_100236783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1393	Open in IMG/M
3300005764\|Ga0066903_106134351	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	629	Open in IMG/M
3300005764\|Ga0066903_108534743	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300006034\|Ga0066656_11140227	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300006163\|Ga0070715_10198507	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300006791\|Ga0066653_10256870	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300006797\|Ga0066659_10170330	All Organisms → cellular organisms → Bacteria	1567	Open in IMG/M
3300006797\|Ga0066659_11918777	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300006800\|Ga0066660_11271930	Not Available	576	Open in IMG/M
3300006800\|Ga0066660_11283963	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	573	Open in IMG/M
3300009098\|Ga0105245_11867050	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300009100\|Ga0075418_12660949	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300010048\|Ga0126373_12234580	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	608	Open in IMG/M
3300010048\|Ga0126373_12404138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	587	Open in IMG/M
3300010322\|Ga0134084_10103356	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300010325\|Ga0134064_10464195	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300010326\|Ga0134065_10369829	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300010335\|Ga0134063_10494276	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300010335\|Ga0134063_10525107	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300010359\|Ga0126376_12135918	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300010359\|Ga0126376_12967213	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	524	Open in IMG/M
3300010361\|Ga0126378_10497504	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1334	Open in IMG/M
3300010376\|Ga0126381_102544441	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300010398\|Ga0126383_11334483	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	807	Open in IMG/M
3300010399\|Ga0134127_10019604	All Organisms → cellular organisms → Bacteria	5216	Open in IMG/M
3300012180\|Ga0153974_1043917	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300012199\|Ga0137383_11201753	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300012201\|Ga0137365_11179354	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	548	Open in IMG/M
3300012202\|Ga0137363_10873839	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	763	Open in IMG/M
3300012356\|Ga0137371_10329198	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300012361\|Ga0137360_10144306	All Organisms → cellular organisms → Bacteria	1880	Open in IMG/M
3300012925\|Ga0137419_11053321	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300012927\|Ga0137416_12214518	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300012929\|Ga0137404_10269875	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300012929\|Ga0137404_10762585	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	878	Open in IMG/M
3300012971\|Ga0126369_10464511	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300012971\|Ga0126369_12756928	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300012977\|Ga0134087_10233076	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300012977\|Ga0134087_10762862	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300012987\|Ga0164307_11442567	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300013306\|Ga0163162_11085000	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300014157\|Ga0134078_10333792	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300014166\|Ga0134079_10509421	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300015242\|Ga0137412_10570581	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300015264\|Ga0137403_10263763	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1629	Open in IMG/M
3300015371\|Ga0132258_12144392	Not Available	1404	Open in IMG/M
3300015372\|Ga0132256_100863626	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300015372\|Ga0132256_101016090	All Organisms → cellular organisms → Bacteria → PVC group	944	Open in IMG/M
3300016294\|Ga0182041_11601892	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	601	Open in IMG/M
3300018433\|Ga0066667_10108656	All Organisms → cellular organisms → Bacteria	1866	Open in IMG/M
3300018433\|Ga0066667_11329100	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300018482\|Ga0066669_11637124	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	589	Open in IMG/M
3300018482\|Ga0066669_12337228	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300021086\|Ga0179596_10228805	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	913	Open in IMG/M
3300021178\|Ga0210408_10255099	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300025920\|Ga0207649_10146660	All Organisms → cellular organisms → Bacteria	1620	Open in IMG/M
3300025926\|Ga0207659_11327309	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300025929\|Ga0207664_11086060	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300026309\|Ga0209055_1280898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → unclassified Stenotrophomonas → Stenotrophomonas sp. LM091	521	Open in IMG/M
3300026312\|Ga0209153_1259020	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M
3300026314\|Ga0209268_1047434	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1382	Open in IMG/M
3300026317\|Ga0209154_1198369	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300026324\|Ga0209470_1299291	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	598	Open in IMG/M
3300026327\|Ga0209266_1065056	All Organisms → cellular organisms → Bacteria	1722	Open in IMG/M
3300026330\|Ga0209473_1249926	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300026536\|Ga0209058_1217807	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300026538\|Ga0209056_10063852	All Organisms → cellular organisms → Bacteria	3202	Open in IMG/M
3300026547\|Ga0209156_10090613	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300026656\|Ga0208578_102304	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	521	Open in IMG/M
3300026693\|Ga0208709_102517	Not Available	743	Open in IMG/M
3300026693\|Ga0208709_103369	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	660	Open in IMG/M
3300031538\|Ga0310888_10939261	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300031719\|Ga0306917_10819915	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300031946\|Ga0310910_10688810	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300031947\|Ga0310909_10607469	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300031954\|Ga0306926_10561401	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300032122\|Ga0310895_10072018	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300032159\|Ga0268251_10576579	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300032261\|Ga0306920_101190739	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300033289\|Ga0310914_10477342	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300033412\|Ga0310810_10426074	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1357	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.29%
Host-Associated	Host-Associated	11.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.29%
Plants	Host-Associated → Plants	10.81%
Fungi	Host-Associated → Fungi	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.60%
Phylloplane	Host-Associated → Plants → Phylloplane	0.90%
Mycelium	Host-Associated → Fungi → Mycelium	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.97%
Loam	Environmental → Terrestrial → Soil → Loam	15.32%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.90%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	29.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.11%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	6.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	25.23%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.11%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.11%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	6.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.70%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.90%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459011	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect Gram positive lysis 0-10cm	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026656	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN577 (SPAdes)	Environmental	Open in IMG/M
3300026693	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN595 (SPAdes)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02408740	2088090014	Soil	MRDFKINWRRAAFLFIGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWA
GPIPI_03893500	2088090014	Soil	MGNFKIDWRRAALLFSGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQ
F64_04666040	2170459011	Grass Soil	MGKREINWRRAALLFSGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLLFRFSRRFPIEFRP
F24TB_102496672	3300000550	Soil	MGTFKINCRNAALLFGGWTLVGVIFAAISYAAAIGENNKEFGFVSALRLNLVQFYL
F14TC_1002887572	3300000559	Soil	MRSLKISWHKVALLFGGWTLVSVIFALVSYAAAIGENNKEFGFVAALRLNLVQFYLWAIL
AP72_2010_repI_A001DRAFT_10526601	3300000893	Forest Soil	MRNLKIKCRRAALLFVGWTLVSLIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAIL
JGI1027J12803_1025527371	3300000955	Soil	MGNRKMDRRKAALLFAGWTLVSVIFAAISYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLV
JGI1027J12803_1037818942	3300000955	Soil	MDNIKVNWRRAALLFGGWTLVSVIFAAVSYAAAIGQNNKEFGFVSALRLNLVQFYLWAILSPLLFKFSRRFPIEFR
JGI1027J12803_1080210711	3300000955	Soil	MGNFKIKFRRAALFFVGWTLVSIIFVGISYAAAIGENNKEFGFVSALKLNLVQFYVWAILSPFVFRFSRRF
JGI10216J12902_1200833442	3300000956	Soil	MGNLNMNWRRTALLLAGWTLVSVIFAAISYAAAIGENNKEFGFVAALRLNLVQFYLWAILSPLLFRFSRRFP
C688J35102_1198145131	3300002568	Soil	MNELKINWRRATLLFSGWTLVGLIFAAVSYAAAIGENNKQFGFVSALRLNLVQFYLWAILAPLLF
Ga0063455_1003678082	3300004153	Soil	MNELKINWRRATLLFSGWTLVGLIFAAVSYAAAIGENNKQFGFVSALRLNLVQFYLWAILAPLLFRFSRRF
Ga0062590_1030179372	3300004157	Soil	MRNLKIKCRRAVLLFVGWTLVSLIFAGISYAGAIGENNKEFGFVSALRLNLVQFYLWAILSPFLFR
Ga0062592_1016553141	3300004480	Soil	MSSLKISWHKVALLFGGSTLVSVIFALVSYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLLFRFSRRFPIE
Ga0066675_114467811	3300005187	Soil	MGNRKINWRRAAFLFGGWTLVSVIFAAVSFAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLLLRFSRRFPIEFRP
Ga0065712_102539151	3300005290	Miscanthus Rhizosphere	MNWRRAALLFVGWTLVSVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYV
Ga0065705_101647641	3300005294	Switchgrass Rhizosphere	MENFTIRCRRAALVFVGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLVFRFSRRFPIELRPLNVRN
Ga0065705_111574481	3300005294	Switchgrass Rhizosphere	MSNVKINWRRAVILFGGWTLVSVIFAAISYAAAIGENHKEFGFVAALRLNLVQFYLWAILSPLLFRFS
Ga0070680_1009195392	3300005336	Corn Rhizosphere	MNWRRAALLFVGWTLVSVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAILTP
Ga0070660_1010927651	3300005339	Corn Rhizosphere	MRNFKTNWRRAAFLFIGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPSVFRFSYRFPIELR
Ga0070689_1010600271	3300005340	Switchgrass Rhizosphere	MRNPKINYRRAALLFVGWTLASVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILAPFVFRFS
Ga0070692_100825603	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MNWHRAALLFVGWTLVSVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAI
Ga0070688_1004228481	3300005365	Switchgrass Rhizosphere	MRNPKINYRRAALLFVGWTLASVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILAPFVFRFSRRFP
Ga0066686_110726271	3300005446	Soil	MGNFKISYRRATLLFLGWTLVSIIFAGISYAAAVGENNKEFGFISALRLNLVQFYVWAFLSPLVFRFSRRF
Ga0070685_112044552	3300005466	Switchgrass Rhizosphere	MRNPKINYRRAALLFVGWTLASVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILAPFVFRFTRRFPIEFRPLNVR
Ga0066695_103086471	3300005553	Soil	MGNRKINWRRAAFLFGGWTLVSVIFAAVSFAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLL
Ga0066693_101082091	3300005566	Soil	MGNFKISYRRATLLFLGWTLVSIIFAGISYAAAIGENNKEFGFISALRLNLVQFYVWAILSPLVFRFSRRFPIE
Ga0066703_105749151	3300005568	Soil	MGNLKINWRKAVLLFGGWTLVSLVFALISYAAAIGENHKEFGFVAALRLNLVQFYLWAILSPLL
Ga0066705_105707082	3300005569	Soil	MENFTIKCRRAALLFVGWTLVSIIFAGISYAAAVGENNKEFGFVSALRLNLVQFYVWAILSPVVFR
Ga0068857_1025130821	3300005577	Corn Rhizosphere	MNWRRAALLFVGWTLVSVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAILTPFVF
Ga0066905_1002367831	3300005713	Tropical Forest Soil	MGKFKTNYRRAALLFVGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAILTPFVFR
Ga0066903_1061343511	3300005764	Tropical Forest Soil	MGKFKTNYRRAALLFVGWTLVSIIFAGISYAAAIGENNKEFGFVSALKLNLVQFYLWAIL
Ga0066903_1085347431	3300005764	Tropical Forest Soil	MRKLEINWRRAALLFGGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAIL
Ga0066656_111402272	3300006034	Soil	MGNLKINWRRAALLFVGWTLVSIIFAGISYAAAIGENNKEFGFVSALKLNLVQFYLWAILSPLVFRFSRRFPIELRPLN
Ga0070715_101985071	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRTFKTSWRRAAFLFIGWTLVSVIFAGISYAAAIGENNKEFGFGSALRLNLVQFYVWAILAPFV
Ga0066653_102568701	3300006791	Soil	MENFTIKCRRAALLFVGWTLVSIISAGISYAAAIGENNKEFGFVSALRLNVVQFYLWAILTPLLFRF
Ga0066659_101703301	3300006797	Soil	MGNFKTNWRRAALLFAGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQF
Ga0066659_119187771	3300006797	Soil	MGNRKVNWRRAAFLFGGWTLVSVIFAAVSFAAAIGENNKEFGFVSALRLNLVQFY
Ga0066660_112719301	3300006800	Soil	MGYLKTNWRRAAFVFGGCTLVSVIFAAVSYAAAVGENNKEFDFVSALRLNLVQFYLWAILSPLIFRFSRRFPIE
Ga0066660_112839631	3300006800	Soil	MGYLKTNWRRAAFVFGGCTLVSFIFAAVSYAAAAGENNKEFDFVSALRLNLVQFYLWAILSPLIFRFSRRFPIE
Ga0105245_118670501	3300009098	Miscanthus Rhizosphere	MRNPKINYRRAALLFVGWTLASVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILAPF
Ga0075418_126609491	3300009100	Populus Rhizosphere	MGNSNISWRRAALLFVGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILAPFVFRFSR
Ga0126373_122345801	3300010048	Tropical Forest Soil	MENLKINWRRAALLFGGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFY
Ga0126373_124041381	3300010048	Tropical Forest Soil	MGNHKITWRKASLFFSGWTLVGIVFALISYAAAIGENHKEFGFVAALKLNLVQFYLWAILSPLLFRFSRRFPIELRPL
Ga0134084_101033561	3300010322	Grasslands Soil	MENFTIKCRRAALLFVGWTLVSIIFAGISYAAAVGENNKEFGFVSALRLNLVQFYVWAILSPVVF
Ga0134064_104641952	3300010325	Grasslands Soil	MENFTIKCRRAALLFVGWTLVSIIFAGISYAAVIGENNKEFGFVSALRLNLVQFYLWAILSPLLLRFSRRFPIEFRPLNLRN
Ga0134065_103698291	3300010326	Grasslands Soil	MALLFGGWTLVGVIFAAVSYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLLF
Ga0134063_104942762	3300010335	Grasslands Soil	MGNRKINWRRAAFLFGGWTLVSVIFAAVSFAAAIGENNKEFGFVSALRLNLVQFYLWAI
Ga0134063_105251071	3300010335	Grasslands Soil	MSNLKISWRRAVLLFGGWTLVSVIFALISYAAAIGENNKEFGFVSALRLNLVQFYLW
Ga0126376_121359181	3300010359	Tropical Forest Soil	MRNLKIKCRRAALLFGGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAILAPFVFRFSRRFPIELRPLNVRN
Ga0126376_129672131	3300010359	Tropical Forest Soil	MVNRKTKLTQLVLFFCGWTLVGLIFAAVSYAAALGENARDFGFGAALRLNLVQFYLWAIFSPLLFRFSRRFPIELRP
Ga0126378_104975041	3300010361	Tropical Forest Soil	MENFKINGRRAALLFIGWTLVGIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAILSPLVFRFSRR
Ga0126381_1025444412	3300010376	Tropical Forest Soil	MLGLIYFDSAVVNFKINWRRAALLLVGWTLVSVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAILTPFVFRFCRRFPIE
Ga0126383_113344831	3300010398	Tropical Forest Soil	MENFKINWRRAGLLFIGWTLVSVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAIL
Ga0134127_100196041	3300010399	Terrestrial Soil	MNWRRAALLFVGWTLVSVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWA
Ga0153974_10439172	3300012180	Attine Ant Fungus Gardens	MGNLKTNWRRTALLFGGWTLVSVIFAMVSYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLLFRFSR
Ga0137383_112017531	3300012199	Vadose Zone Soil	MALLFGGWTLVGVIFAAVSYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLLFRFSRHFPIEFRPL
Ga0137365_111793541	3300012201	Vadose Zone Soil	MALLFGGGTLVGVIFAAVPYAAATGEANEACGFGCALRLNLVQF
Ga0137363_108738391	3300012202	Vadose Zone Soil	MGYLKTNWRRAAFVFGGCTLVSFIFAAVSYAAAVGENNKEFDFISALRLNLVQFYLWAILSPLIFRFSRRFPI
Ga0137371_103291982	3300012356	Vadose Zone Soil	MALLFGGWTLVGVIFAAVSYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLLYRFS
Ga0137360_101443061	3300012361	Vadose Zone Soil	MGNFKISYRRAALVFLGWTLVSIIFAGISYAAAIGENNKEFGFISALRLNLVQF
Ga0137419_110533212	3300012925	Vadose Zone Soil	MDNFTIKCRRAALLFVGWTLVSIIFAGISYAAAIGENNKEFGFASALRLNLVQFYLWAILSPLVFRFSR
Ga0137416_122145182	3300012927	Vadose Zone Soil	MENFTIKCRRGAFLFVGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLVFRF
Ga0137404_102698752	3300012929	Vadose Zone Soil	MGNFKTNWRRAALLFGGWTLVSVIFAAISYAAAIGENNKEFGFVSALRLNLVQFYLWAI*
Ga0137404_107625852	3300012929	Vadose Zone Soil	MGYFKTNWRRAGLLLGGWTLVSVIFAAISYAAAIGENNKEFGFVSALRLNLVQFYLWAISHRFFLNSVVAF
Ga0126369_104645111	3300012971	Tropical Forest Soil	MRDVKITCRKAVLLFIGWTLVGIIFAGISYAAAIGENNKEFGFVSALKLNLVQFYLWAIL
Ga0126369_127569281	3300012971	Tropical Forest Soil	MRDFKINWRRAAFLFLGWTLVGIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWA
Ga0134087_102330761	3300012977	Grasslands Soil	MGNFKTNWRRAALLFGGWTLVSVIFAAISYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLLFRFSRRFPIEFR
Ga0134087_107628621	3300012977	Grasslands Soil	MENFTIKCRRAALLFVGWTLVGIIFAGISYAAAVGENNKEFGFVSALRLNLVQFYLWAILSPLLFRFSCR
Ga0164307_114425672	3300012987	Soil	MENFTIKCRRAALLFVGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAILSPLVFRF
Ga0163162_110850001	3300013306	Switchgrass Rhizosphere	MRNPKINYRRAALLFVGWTLASVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILAPFVFR
Ga0134078_103337922	3300014157	Grasslands Soil	MENFTIKCRRAALLFVGWTLVSIIFAGISYAAAVGENNKEFGFVSALRLNLVQFYVWAILSPLVFRYSRRFPI
Ga0134079_105094211	3300014166	Grasslands Soil	MGNFKTNWRRAALLFGGWTLVSVIFAAISYAAAIGENNKEFGFVSARRLNLVQFYLWAILSPL
Ga0137412_105705812	3300015242	Vadose Zone Soil	MGNFKISYRRAALVFLGWTLVSIIFAGISYAAAIGENNKEFGFISALRLNLVQFYVWAILSPLVFRFSRRFPIELRPL
Ga0137403_102637632	3300015264	Vadose Zone Soil	MGYFKTNWRRAGLLLGGWTLVSVIFAAISYAAAIGENNKEFGFVSALRLNLVQFYLWAI*
Ga0132258_121443921	3300015371	Arabidopsis Rhizosphere	MSNVKINWRRAVLLFGGWTLVSVIFAAISYAAAIGENHKEFGFVAALRLNLVQFYLWAILAPFVFRFTR
Ga0132256_1008636262	3300015372	Arabidopsis Rhizosphere	MNWRRAALLFVGWTLVSVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAILTPFVFRFSR
Ga0132256_1010160902	3300015372	Arabidopsis Rhizosphere	VLLFGGWTLVSIIFAAISYAAAIGENNKEFGFVAALRLNLVQFYLWAILAPLLFKFSRRF
Ga0182041_116018922	3300016294	Soil	MGNLKTNWRSAALLFAGSTVVSFIFAAVSYAAAIGENAKDFYFVSALRLNLVQFYLWAILSPLLFRG
Ga0066667_101086563	3300018433	Grasslands Soil	MSNLKISWRRAVLLFGGWTLVSVIFALISYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLLFRFS
Ga0066667_113291001	3300018433	Grasslands Soil	MGNFKISYRRATLLFLGWTLVSIIFAGISYAAAIGENNKEFGFISALRLNLVQFYVWAVLSPLVFRFSRRFPIE
Ga0066669_116371242	3300018482	Grasslands Soil	MGNFKISYRRAALRFLGWTLVSINFARNSYASAIGENKKEFGLISALSLNLVQFYV
Ga0066669_123372281	3300018482	Grasslands Soil	MGNVKINWRKAALLFGGWTLVSVIFAAVSYAAALGENNREFGFVSALRLNLVQFYLWAILSPLIFR
Ga0179596_102288051	3300021086	Vadose Zone Soil	MGNFKISYRRAALFFLGWTLVSIIFAGISYTAAIGENNKEFGFISALRLNLVQFYVWAILSPLVFRFSRRFPIELRPLNVRN
Ga0210408_102550991	3300021178	Soil	MGNLEINWRRAALFFSGWTLVSVIFALVSYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLLFRFSRRFPIELRP
Ga0207649_101466603	3300025920	Corn Rhizosphere	MRNPKINYRRAALLFVGWTLASVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILAPFVFRFTRRFP
Ga0207659_113273092	3300025926	Miscanthus Rhizosphere	MRNPKINYRRAALLFVGWTLASVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYL
Ga0207664_110860601	3300025929	Agricultural Soil	MRTFKTSWRRAAFLFIGWTLVSVIFAGISYAAAIGENNKEFGFGSALRLNLVQFYVWAILAPFVFRFSRRFPIELRPLN
Ga0209055_12808981	3300026309	Soil	MGNFKISYRRAALVFLGWTLVSIIFAGISYAAAIGENNKEFGFISALRLNLVQFYVWAVLSPLVFRFSRRFPIE
Ga0209153_12590202	3300026312	Soil	MGNFKISYRRAALVFLGWTLVSIIFAGISYAAAIGENNKEFGFISALKLNLVQFYVWAILSP
Ga0209268_10474341	3300026314	Soil	MGNLKINWRRAALLFGGWTLVSVIFAAISYAAAIGENNKEFGFVSALRLNLVQFYLWAILAPLLFRFSRR
Ga0209154_11983692	3300026317	Soil	MGNFKTNWRRAALLFGGWTLVSVIFAAISYAAAIGENNKEFGFVSALRLNLVQFY
Ga0209470_12992911	3300026324	Soil	MGYLKTNWRRAAIVFGGCTLVSFIFAAVSYAAAVGENNKEFDFVSALRLNLVQFYLWAILSPLIFRFSRRFPIE
Ga0209266_10650563	3300026327	Soil	MCNLKINWRRMALLFGGWTLVGVIFAAVSYAAAIGENNKEFGFVSALRLNLVQFYLWA
Ga0209473_12499262	3300026330	Soil	MGNRKINWRRAAFLFGGWTLVSVIFAAVSFAAAIGENNKEFGFVSALRLNLVQFYLWAIL
Ga0209058_12178071	3300026536	Soil	MGNFKTNWRRAALLFGGWTLVSVIFAAISYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLLFRFSRRFPI
Ga0209056_100638521	3300026538	Soil	MGNFKIKCRRAALLFVGWTLVSIIFAGISYAAAIGENNKEFGFASALRLNLVQFYLWAILAPLVFRFSRRFP
Ga0209156_100906131	3300026547	Soil	MGNFKISYRRATLLFLGWTLVSIIFAGISYAAAIGENNKEFGFISALRLNLVQFYVWAVLSPLVFRFSRRFPIEF
Ga0208578_1023042	3300026656	Soil	MGYFKTNWRRTTLFLGGWTLVSVIFAAISYAAAIGENNKEFGFVSALRLNLVQFYLWAI
Ga0208709_1025172	3300026693	Soil	MRNREIHWRRAALLFSGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILSPLLFRFSRRF
Ga0208709_1033692	3300026693	Soil	MSSLKISWHKVALLFGGWTLVSVIFALVSYAAAIGENNKEFGFVAALRLNLVQFYLWAILSPLLFKFSRRFP
Ga0310888_109392612	3300031538	Soil	MENFTIKCRRAALLLVGWTLVSLIFAGISYAAAIGENNKEFGFGSALRLNLVQFYLWAILSPLV
Ga0306917_108199151	3300031719	Soil	MGNLKANWRRAALLFGGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAILAPFV
Ga0310910_106888102	3300031946	Soil	VVSNPKLNWRRVAFLFIGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAI
Ga0310909_106074692	3300031947	Soil	MGNLKANWRRAALLFGGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAI
Ga0306926_105614012	3300031954	Soil	MGNLKANWRRAALLFGGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAILAPFVF
Ga0310895_100720182	3300032122	Soil	MRNPKINYRRAALLFVGWTLASVIFAGISYAAAIGENNKEFGFVSALRLNLVQFYLWAILAPFVFRFSRRFPIEFRP
Ga0268251_105765791	3300032159	Agave	VANFKTKSRRAALLFVGWTLVSVIFAGISYAAAIGENNKEFGFGSALRLNLVQFY
Ga0306920_1011907392	3300032261	Soil	MGNLKANWRRAALLFGGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAILAPFVFRFSRRFPIELR
Ga0310914_104773421	3300033289	Soil	MGNLKVNWRRAALLFGGWTLVSIIFAGISYAAAIGENNKEFGFVSALRLNLVQFYVWAILAP
Ga0310810_104260743	3300033412	Soil	MPDLKLNWRRTALLFVGWTLVSLIFAGISYAAAVGENNKEFGFGSALSLNLVQFYV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086244

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences