Sample 3300025571

Overview

Basic Information
IMG/M Taxon OID	3300025571 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110114 \| Gp0061313 \| Ga0207874
Sample Name	Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-1-D (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	349396572
Sequencing Scaffolds	15
Novel Protein Genes	15
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium	1
Not Available	3
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
Type	Engineered
Taxonomy	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Joint BioEnergy Institute, California, USA
Coordinates	Lat. (^o)	38.5402	Long. (^o)	-121.75	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000492	Metagenome / Metatranscriptome	1078	Y
F003627	Metagenome / Metatranscriptome	476	Y
F005068	Metagenome / Metatranscriptome	413	Y
F009365	Metagenome / Metatranscriptome	319	Y
F018530	Metagenome / Metatranscriptome	234	Y
F025700	Metagenome / Metatranscriptome	200	Y
F026032	Metagenome / Metatranscriptome	199	Y
F036417	Metagenome / Metatranscriptome	170	Y
F037149	Metagenome	168	Y
F053876	Metagenome	140	Y
F064351	Metagenome	128	Y
F079549	Metagenome / Metatranscriptome	115	Y
F098955	Metagenome / Metatranscriptome	103	Y

Family

Category

Number of Sequences

3D Structure?

F000492

Metagenome / Metatranscriptome

1078

F003627

Metagenome / Metatranscriptome

476

F005068

Metagenome / Metatranscriptome

413

F009365

Metagenome / Metatranscriptome

319

F018530

Metagenome / Metatranscriptome

234

F025700

Metagenome / Metatranscriptome

200

F026032

Metagenome / Metatranscriptome

199

F036417

Metagenome / Metatranscriptome

170

F037149

Metagenome

168

F053876

Metagenome

140

F064351

Metagenome

128

F079549

Metagenome / Metatranscriptome

115

F098955

Metagenome / Metatranscriptome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207874_1005020	All Organisms → cellular organisms → Bacteria	9306	Open in IMG/M
Ga0207874_1008104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium	5727	Open in IMG/M
Ga0207874_1010399	All Organisms → cellular organisms → Bacteria	4506	Open in IMG/M
Ga0207874_1023364	Not Available	2086	Open in IMG/M
Ga0207874_1039679	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
Ga0207874_1046484	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1115	Open in IMG/M
Ga0207874_1053762	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
Ga0207874_1059672	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
Ga0207874_1060801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	876	Open in IMG/M
Ga0207874_1068339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	791	Open in IMG/M
Ga0207874_1069164	All Organisms → cellular organisms → Bacteria → Proteobacteria	782	Open in IMG/M
Ga0207874_1082324	Not Available	672	Open in IMG/M
Ga0207874_1083039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	668	Open in IMG/M
Ga0207874_1103096	Not Available	557	Open in IMG/M
Ga0207874_1115220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	508	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207874_1005020

All Organisms → cellular organisms → Bacteria

9306

Open in IMG/M

Ga0207874_1008104

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium

5727

Open in IMG/M

Ga0207874_1010399

All Organisms → cellular organisms → Bacteria

4506

Open in IMG/M

Ga0207874_1023364

Not Available

2086

Open in IMG/M

Ga0207874_1039679

All Organisms → cellular organisms → Bacteria

1285

Open in IMG/M

Ga0207874_1046484

All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium

1115

Open in IMG/M

Ga0207874_1053762

All Organisms → cellular organisms → Bacteria

976

Open in IMG/M

Ga0207874_1059672

All Organisms → cellular organisms → Bacteria

890

Open in IMG/M

Ga0207874_1060801

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium

876

791

All Organisms → cellular organisms → Bacteria → Proteobacteria

782

Open in IMG/M

Ga0207874_1082324

Not Available

672

Open in IMG/M

Ga0207874_1083039

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

668

Open in IMG/M

Ga0207874_1103096

Not Available

557

Open in IMG/M

Ga0207874_1115220

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

508

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207874_1005020	Ga0207874_10050201	F026032	MFCEGYDPAFPTDLRRMTTGIGGWQADDPPTIELTLAVGLWSLEAGRIACRFGIRRPGDDVVYFGEGDTTVDEPGEMAIMPLRLTVTLDRPGVYWAICEFDGRPLVQVPFSVSEAPPPAAGGQPAPLP
Ga0207874_1008104	Ga0207874_10081042	F018530	MIQGLPGVSQTTRDFVQLVRLFLRDFPELNRLIAGVESTDRQIAWAIMDALADFNGTPPFTTLTLDDLLYRNQHNLMLRMTVISILESVAMLQVRNHINYSNGGITVGVNDKAPELMRWLQYFKATTDQMKQRVKVALNIEGILGSSNMGVSSEYWAVNSTYAAY
Ga0207874_1010399	Ga0207874_10103995	F064351	MMPNQSAAANGLSAFRSSVAGIRERTVRSTAAAEAVAELDR
Ga0207874_1023364	Ga0207874_10233641	F009365	MNSTLHRLRTVLSDLVAEDRPGYKRVDASPARPDDGSWLEPRRR
Ga0207874_1039679	Ga0207874_10396792	F098955	MDSSAIPVFLAGPFPVLHTARVMHDEQEVELDVALLIGGLPTMLVATRFPLDDTWERIQRALTSGDARLGVAGVPHEAQSITGAPEIFPSAYVGLECANGERLVLAHIKGSDREQEAEAFARSVIAAILEGKTPAELGELIED
Ga0207874_1046484	Ga0207874_10464841	F036417	PARVPLRHRIPTVLVRLATDDGEVVFRARWKRSALELQRNILFRMRRGSPLWFEDEWGHDLCFRPECVRAAMVDGR
Ga0207874_1053762	Ga0207874_10537622	F036417	MVYYARVPIRQLIPTVLVRLATDEGEVVFRARWKRSPLELQRSILFRLRQGSHLWFENESGHAICFKPESVWGAVVDGR
Ga0207874_1059672	Ga0207874_10596722	F098955	MDSSAIPVFLAGPFPVLHTFRVQEIEQEVELDVALLISGIPTMIAATRFPLDDTWERIQRALSSGDARLGVAGMPHETQSITGAPEIFPSAYVGLECANGERLVLAHIRGLNREQESEAY
Ga0207874_1060801	Ga0207874_10608011	F003627	VDRETARKNMATGLAAGGFAAAIFALTFVAAILYIA
Ga0207874_1068339	Ga0207874_10683391	F037149	QLGRERLARVFDYLLADEVPHVHNGVRWGSYLLGGDERAYREKVRELRAGLDATGAPTGS
Ga0207874_1069164	Ga0207874_10691641	F005068	EILGASELQIADSDGDPLNDTGVRHLRVEVQKDTPFSRLLDRLTERMRK
Ga0207874_1082324	Ga0207874_10823242	F053876	VIALLLAQFLDPSRGPEQTGDFRVSPTFFVVLVLLGFLVGTFGHVISSKTLIIAGVTMIFAATVLLPLGLAIAH
Ga0207874_1083039	Ga0207874_10830392	F079549	MADWLLLRLPRAPEQPASWISVDARGAVQDGPHSGPLTLAATQAA
Ga0207874_1103096	Ga0207874_11030961	F000492	SMKLDALGELAQLMQKYVPRSHAGIFCNERTQSATLDRKLIFWCVA
Ga0207874_1115220	Ga0207874_11152201	F025700	MKALADACNRGVMSSIIERRKLLILANDRALRRELEAIFADLDVVCSETSEQSLALVRRIEPDVVLLDVGPG

Scaffold ID

Protein ID

Family

Sequence

Ga0207874_1005020

Ga0207874_10050201

F026032

MFCEGYDPAFPTDLRRMTTGIGGWQADDPPTIELTLAVGLWSLEAGRIACRFGIRRPGDDVVYFGEGDTTVDEPGEMAIMPLRLTVTLDRPGVYWAICEFDGRPLVQVPFSVSEAPPPAAGGQPAPLP

Ga0207874_1008104

Ga0207874_10081042

F018530

MIQGLPGVSQTTRDFVQLVRLFLRDFPELNRLIAGVESTDRQIAWAIMDALADFNGTPPFTTLTLDDLLYRNQHNLMLRMTVISILESVAMLQVRNHINYSNGGITVGVNDKAPELMRWLQYFKATTDQMKQRVKVALNIEGILGSSNMGVSSEYWAVNSTYAAY

Ga0207874_1010399

Ga0207874_10103995

F064351

MMPNQSAAANGLSAFRSSVAGIRERTVRSTAAAEAVAELDR

Ga0207874_1023364

Ga0207874_10233641

F009365

MNSTLHRLRTVLSDLVAEDRPGYKRVDASPARPDDGSWLEPRRR

Ga0207874_1039679

Ga0207874_10396792

F098955

MDSSAIPVFLAGPFPVLHTARVMHDEQEVELDVALLIGGLPTMLVATRFPLDDTWERIQRALTSGDARLGVAGVPHEAQSITGAPEIFPSAYVGLECANGERLVLAHIKGSDREQEAEAFARSVIAAILEGKTPAELGELIED

Ga0207874_1046484

Ga0207874_10464841

F036417

PARVPLRHRIPTVLVRLATDDGEVVFRARWKRSALELQRNILFRMRRGSPLWFEDEWGHDLCFRPECVRAAMVDGR

Ga0207874_1053762

Ga0207874_10537622

F036417

MVYYARVPIRQLIPTVLVRLATDEGEVVFRARWKRSPLELQRSILFRLRQGSHLWFENESGHAICFKPESVWGAVVDGR

Ga0207874_1059672

Ga0207874_10596722

F098955

MDSSAIPVFLAGPFPVLHTFRVQEIEQEVELDVALLISGIPTMIAATRFPLDDTWERIQRALSSGDARLGVAGMPHETQSITGAPEIFPSAYVGLECANGERLVLAHIRGLNREQESEAY

Ga0207874_1060801

Ga0207874_10608011

F003627

VDRETARKNMATGLAAGGFAAAIFALTFVAAILYIA

Ga0207874_1068339

Ga0207874_10683391

F037149

QLGRERLARVFDYLLADEVPHVHNGVRWGSYLLGGDERAYREKVRELRAGLDATGAPTGS

Ga0207874_1069164

Ga0207874_10691641

F005068

EILGASELQIADSDGDPLNDTGVRHLRVEVQKDTPFSRLLDRLTERMRK

Ga0207874_1082324

Ga0207874_10823242

F053876

VIALLLAQFLDPSRGPEQTGDFRVSPTFFVVLVLLGFLVGTFGHVISSKTLIIAGVTMIFAATVLLPLGLAIAH

Ga0207874_1083039

Ga0207874_10830392

F079549

MADWLLLRLPRAPEQPASWISVDARGAVQDGPHSGPLTLAATQAA

Ga0207874_1103096

Ga0207874_11030961

F000492

SMKLDALGELAQLMQKYVPRSHAGIFCNERTQSATLDRKLIFWCVA

Ga0207874_1115220

Ga0207874_11152201

F025700

MKALADACNRGVMSSIIERRKLLILANDRALRRELEAIFADLDVVCSETSEQSLALVRRIEPDVVLLDVGPG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025571: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-1-D (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences