Sample 3300025564

Overview

Basic Information
IMG/M Taxon OID	3300025564 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101332 \| Ga0210084
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordC_D2 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	209679310
Sequencing Scaffolds	39
Novel Protein Genes	42
Associated Families	38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5
All Organisms → cellular organisms → Bacteria	5
Not Available	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Sednavirus → Synechococcus virus SRIP2	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.015896	Long. (^o)	-122.501663	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F010686	Metagenome / Metatranscriptome	300	Y
F016277	Metagenome / Metatranscriptome	248	Y
F019312	Metagenome / Metatranscriptome	230	N
F021446	Metagenome / Metatranscriptome	219	Y
F023896	Metagenome / Metatranscriptome	208	Y
F026597	Metagenome	197	Y
F031307	Metagenome	183	Y
F034003	Metagenome	176	Y
F036767	Metagenome / Metatranscriptome	169	Y
F040632	Metagenome / Metatranscriptome	161	Y
F040633	Metagenome / Metatranscriptome	161	Y
F041807	Metagenome / Metatranscriptome	159	N
F044506	Metagenome / Metatranscriptome	154	Y
F044508	Metagenome / Metatranscriptome	154	Y
F045356	Metagenome / Metatranscriptome	153	N
F047065	Metagenome / Metatranscriptome	150	Y
F048318	Metagenome / Metatranscriptome	148	Y
F048676	Metagenome / Metatranscriptome	148	Y
F052686	Metagenome / Metatranscriptome	142	Y
F054044	Metagenome / Metatranscriptome	140	Y
F054265	Metagenome	140	Y
F058158	Metagenome / Metatranscriptome	135	Y
F059979	Metagenome / Metatranscriptome	133	Y
F062490	Metagenome / Metatranscriptome	130	Y
F073570	Metagenome	120	Y
F074578	Metagenome / Metatranscriptome	119	Y
F076109	Metagenome	118	Y
F076223	Metagenome / Metatranscriptome	118	Y
F076224	Metagenome	118	Y
F078289	Metagenome / Metatranscriptome	116	N
F079928	Metagenome / Metatranscriptome	115	N
F087210	Metagenome / Metatranscriptome	110	Y
F090405	Metagenome / Metatranscriptome	108	Y
F094484	Metagenome	106	Y
F097165	Metagenome	104	Y
F099323	Metagenome / Metatranscriptome	103	N
F101182	Metagenome	102	Y

Family

Category

Number of Sequences

3D Structure?

F000352

Metagenome / Metatranscriptome

1247

F010686

Metagenome / Metatranscriptome

300

F016277

Metagenome / Metatranscriptome

248

F019312

Metagenome / Metatranscriptome

230

F021446

Metagenome / Metatranscriptome

219

F023896

Metagenome / Metatranscriptome

208

F026597

Metagenome

197

F031307

Metagenome

183

F034003

Metagenome

176

F036767

Metagenome / Metatranscriptome

169

F040632

Metagenome / Metatranscriptome

161

F040633

Metagenome / Metatranscriptome

161

F041807

Metagenome / Metatranscriptome

159

F044506

Metagenome / Metatranscriptome

154

F044508

Metagenome / Metatranscriptome

154

F045356

Metagenome / Metatranscriptome

153

F047065

Metagenome / Metatranscriptome

150

F048318

Metagenome / Metatranscriptome

148

F048676

Metagenome / Metatranscriptome

148

F052686

Metagenome / Metatranscriptome

142

F054044

Metagenome / Metatranscriptome

140

F054265

Metagenome

140

F058158

Metagenome / Metatranscriptome

135

F059979

Metagenome / Metatranscriptome

133

F062490

Metagenome / Metatranscriptome

130

F073570

Metagenome

120

F074578

Metagenome / Metatranscriptome

119

F076109

Metagenome

118

F076223

Metagenome / Metatranscriptome

118

F076224

Metagenome

118

F078289

Metagenome / Metatranscriptome

116

F079928

Metagenome / Metatranscriptome

115

F087210

Metagenome / Metatranscriptome

110

F090405

Metagenome / Metatranscriptome

108

F094484

Metagenome

106

F097165

Metagenome

104

F099323

Metagenome / Metatranscriptome

103

F101182

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210084_1000411	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	8438	Open in IMG/M
Ga0210084_1005440	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2333	Open in IMG/M
Ga0210084_1007207	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2018	Open in IMG/M
Ga0210084_1009478	All Organisms → cellular organisms → Bacteria	1763	Open in IMG/M
Ga0210084_1010095	Not Available	1711	Open in IMG/M
Ga0210084_1011701	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	1592	Open in IMG/M
Ga0210084_1013622	All Organisms → Viruses → Predicted Viral	1479	Open in IMG/M
Ga0210084_1018197	All Organisms → cellular organisms → Bacteria → Proteobacteria	1294	Open in IMG/M
Ga0210084_1019830	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
Ga0210084_1024930	Not Available	1118	Open in IMG/M
Ga0210084_1031553	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1001	Open in IMG/M
Ga0210084_1032365	All Organisms → cellular organisms → Archaea	990	Open in IMG/M
Ga0210084_1036225	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	938	Open in IMG/M
Ga0210084_1037449	Not Available	924	Open in IMG/M
Ga0210084_1038012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	917	Open in IMG/M
Ga0210084_1038248	Not Available	915	Open in IMG/M
Ga0210084_1046728	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis	833	Open in IMG/M
Ga0210084_1048126	Not Available	822	Open in IMG/M
Ga0210084_1048754	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
Ga0210084_1048886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	816	Open in IMG/M
Ga0210084_1049353	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	812	Open in IMG/M
Ga0210084_1069384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	694	Open in IMG/M
Ga0210084_1073631	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	675	Open in IMG/M
Ga0210084_1078260	Not Available	656	Open in IMG/M
Ga0210084_1078291	Not Available	656	Open in IMG/M
Ga0210084_1079692	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
Ga0210084_1082246	Not Available	640	Open in IMG/M
Ga0210084_1082856	Not Available	638	Open in IMG/M
Ga0210084_1085752	Not Available	628	Open in IMG/M
Ga0210084_1100498	All Organisms → cellular organisms → Bacteria → FCB group	581	Open in IMG/M
Ga0210084_1106194	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	566	Open in IMG/M
Ga0210084_1112252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	550	Open in IMG/M
Ga0210084_1112958	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	549	Open in IMG/M
Ga0210084_1119603	Not Available	533	Open in IMG/M
Ga0210084_1119874	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Sednavirus → Synechococcus virus SRIP2	532	Open in IMG/M
Ga0210084_1120040	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	532	Open in IMG/M
Ga0210084_1127496	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
Ga0210084_1132931	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	505	Open in IMG/M
Ga0210084_1135293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	500	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0210084_1000411

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

8438

Open in IMG/M

Ga0210084_1005440

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

2333

Open in IMG/M

Ga0210084_1007207

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

2018

Open in IMG/M

Ga0210084_1009478

All Organisms → cellular organisms → Bacteria

1763

Open in IMG/M

Ga0210084_1010095

Not Available

1711

Open in IMG/M

Ga0210084_1011701

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans

1592

Open in IMG/M

Ga0210084_1013622

All Organisms → Viruses → Predicted Viral

1479

Open in IMG/M

Ga0210084_1018197

All Organisms → cellular organisms → Bacteria → Proteobacteria

1294

Open in IMG/M

Ga0210084_1019830

All Organisms → cellular organisms → Bacteria

1243

Open in IMG/M

Ga0210084_1024930

Not Available

1118

Open in IMG/M

Ga0210084_1031553

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium

1001

Open in IMG/M

Ga0210084_1032365

All Organisms → cellular organisms → Archaea

990

Open in IMG/M

Ga0210084_1036225

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium

938

Open in IMG/M

Ga0210084_1037449

Not Available

924

Open in IMG/M

Ga0210084_1038012

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094

917

Open in IMG/M

Ga0210084_1038248

Not Available

915

Open in IMG/M

Ga0210084_1046728

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis

833

Open in IMG/M

Ga0210084_1048126

Not Available

822

Open in IMG/M

Ga0210084_1048754

All Organisms → cellular organisms → Bacteria

817

Open in IMG/M

Ga0210084_1048886

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

816

Open in IMG/M

Ga0210084_1049353

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

812

Open in IMG/M

Ga0210084_1069384

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

694

Open in IMG/M

Ga0210084_1073631

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium

675

Open in IMG/M

Ga0210084_1078260

Not Available

656

Open in IMG/M

Ga0210084_1078291

Not Available

656

Open in IMG/M

Ga0210084_1079692

All Organisms → cellular organisms → Bacteria

650

Open in IMG/M

Ga0210084_1082246

Not Available

640

Open in IMG/M

Ga0210084_1082856

Not Available

638

Open in IMG/M

Ga0210084_1085752

Not Available

628

Open in IMG/M

Ga0210084_1100498

All Organisms → cellular organisms → Bacteria → FCB group

581

Open in IMG/M

Ga0210084_1106194

All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium

566

Open in IMG/M

Ga0210084_1112252

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus

550

Open in IMG/M

Ga0210084_1112958

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

549

Open in IMG/M

Ga0210084_1119603

Not Available

533

Open in IMG/M

Ga0210084_1119874

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Sednavirus → Synechococcus virus SRIP2

532

Open in IMG/M

Ga0210084_1120040

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

532

Open in IMG/M

Ga0210084_1127496

All Organisms → cellular organisms → Bacteria

516

Open in IMG/M

Ga0210084_1132931

All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium

505

Open in IMG/M

Ga0210084_1135293

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

500

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0210084_1000411	Ga0210084_10004113	F048676	MLFRYSRLCGTASDAVDAVKSEIPQGFKLLKFKMSEYLKNMVKLTISEI
Ga0210084_1005440	Ga0210084_10054404	F078289	MKKTVIILMTLFIVVPLYGFNSLVRHEDIPKMRELGVSQEVIQYFISNQTSSVSSEDVIKMKQSGLKNDDIMSAIKSDLYRPEQKSTSMKEAELIAKLKESGMSDEAVLQFIQTVKSTRRVDSDGNMTKQYTNESQRTQYPTEGATFPKPDNYGYDPINGRFLLLVNPQN
Ga0210084_1007207	Ga0210084_10072071	F048676	MLFRYSRLCGTASDAVDAVKLEVLQDFKLLQFKMLEYLKNIVKLTISKI
Ga0210084_1009478	Ga0210084_10094781	F047065	MTDLLNKFSEAAKVVSSSKTHMWECVNRAYVDHLSDISTDILPEEIQIFYDSIKLRITSVEVLGHIDNDEASYIANDIMYMADVISSDLRKP
Ga0210084_1010095	Ga0210084_10100953	F076109	MEVLFKILFVVAFIGFILCLCVFAVGLFMAFQKNELPDLEDV
Ga0210084_1011701	Ga0210084_10117012	F076223	MRQDVHQSAIMGCRQRRSILTAGLAMIFMLIMAAAPAPLQAANQVAELMLSDHADAKGVVSEHQSKFSSSVGEIHGTALISGAKKGQEVTTELFYMTRNLSILTSRDDLPDDGEVTLTFAFPKPEKGWPAGNYKLVVSIAGGGTKTVTFQVK
Ga0210084_1013622	Ga0210084_10136224	F079928	MTKIPTLYDKLKPRVRAKLKENEGKYSSSVRLVLAKLENTYFIGDLTIEELRQVHLFSDTSYVDQTAISLMWGDEIFDNYEGNN
Ga0210084_1018197	Ga0210084_10181971	F021446	MKTLSIALMATFMLVLAATSTGQAQSAEDGYNDPNPGGKYVYRGCNLTQVIFIQGDKLSEINELTLIIEVQGGQNSHTLRLTFPILAKRQEVNKLILDYQWPLGGDTYEATIIGDTLTNRKTKGYLAGIREEVFTRE
Ga0210084_1019830	Ga0210084_10198302	F076109	MEVIFNIMFFVSVIAAIFCLCVFLGSLFILFQKNELPDIEDV
Ga0210084_1024930	Ga0210084_10249301	F076109	MGVLFSILFVIAVIATIICLCVFLGSLFNLFKKNEMLDIEDG
Ga0210084_1031553	Ga0210084_10315532	F058158	MDQIMIEKQKNYKSDFTKTEKDDLDIWELHVKEREQILAQIAKAARISRIRTWIELIFMLGFICYMLYDIYKDGDLDTIIK
Ga0210084_1032365	Ga0210084_10323652	F031307	MSKIQTYFGFTNGKLVSVLQSVNNDVNQAIDCNYYITEPQEVEKQVAKWKQDNSE
Ga0210084_1036225	Ga0210084_10362251	F076109	MEVLFKILFFVSVVAAILCLCVFLGSLFILFQKNELPDIEDV
Ga0210084_1037449	Ga0210084_10374492	F034003	MKKRRKRNSALKKTNQLSFDFNLNDPIEIHTPKSNISDLRRELAWEHRPIIEIVKS
Ga0210084_1038012	Ga0210084_10380123	F062490	MTRGLFAGFFITLAFVAVVLVVLFGIFTLVSYLAGPVGG
Ga0210084_1038248	Ga0210084_10382481	F101182	MDTYEEGLQYERKMDRISEQIEELMLDAMIVALKKIRDRNLFYNESEIRPHNDPY
Ga0210084_1044695	Ga0210084_10446952	F099323	VNKILGFWHKLKAFLGHRLILELAILGSFIAFTINPGSLGDIMRICGAIFLINVLLGNYHIGDLTEGHLVVLGIFLLMLLMNALMPDQMIHSRSLRYFLTLPGMILAIHCLSKRTKPDSKNLVLYCSIAVLALTIQFVAYHTVERVVNSGGL
Ga0210084_1046728	Ga0210084_10467282	F010686	VRVLDFCGQATKGVWGMSRCQKAMKGVEVCEKPGGIDKRVLILGYPNQRTLNP
Ga0210084_1048126	Ga0210084_10481261	F000352	MKTIELTDSDCTFIHYVLRMYAQQTPGLDSDDKEEIREVAAKFK
Ga0210084_1048754	Ga0210084_10487541	F026597	MFERHRLIVSFSLALLIIAVVGVTVSSFSPSKKSEYFKELKQIYNTVNNYDNKEIYSWEAAKNTLVDLNYWFDFIPRYDAISDEDNDVLVLQEKVRDLTIRQQLRTLPEIRKYFGEYLSDKLYGLDYKVTILNDERNKIIVFTHDSFTGRSALEKFHNTVANDLRALGFKQIRYKWYELEKLKEEKYI
Ga0210084_1048886	Ga0210084_10488862	F040633	KAAFLSGCESHPAILLQPEAIGAVMEVTKWLKPLM
Ga0210084_1049353	Ga0210084_10493531	F044508	RSYKTEIKKKLKISGRQQRWPRPLPGAILVPPALLVVAD
Ga0210084_1049722	Ga0210084_10497221	F087210	ALAGAGTALAHTPDTGFLGNFGHQLTSLHHSPAAILLGVLVVALMLVAFRNRTAR
Ga0210084_1066471	Ga0210084_10664711	F052686	MTEKPRGKAPVPPTAGNDPGHLGVDDRGNVTWEWTDERDLQADDTLGAAERVRALVDP
Ga0210084_1069384	Ga0210084_10693841	F048318	MATLENVRLAITASTEKSGYSHIAYSYELHPSELDCKEQREYTVKTDLWGEDLIDDDVLAWGKDEHKVKFDASSPCEAIKVDRVFEIETKVLDEDFFGDDEVYITVEASSGLGPDAAGEDPVMGKSNTVIGDF
Ga0210084_1073631	Ga0210084_10736312	F054265	VLTIVVVATWGVPPLEPPDEQSFRTVYFLRMALGNVLSLTVGAFLAAGAVSLGLRFAGKATYPRGAIGGAILGGPVGSISAGVGPCMLLISSSDPNWAMIMIERAFLVGGLMGILNGAVAGLVIVFFIQRHSAAGGKTSESEE
Ga0210084_1078260	Ga0210084_10782601	F074578	MGRMVQAPLNSLTVGADATQDLWSLMAAATNKLVLHGWEITSDAVAATLMEVTLHRISGTNSGSAVTEVKLDTDDGDITGIVLSVGTTISTSTGILAGYQWEQLGPLGQVYTPEMRPVIEVSTGIALICNTADAFEMSGWICWEEI
Ga0210084_1078291	Ga0210084_10782911	F019312	MMTHTEAIMKAQIVFEEALTDKETIDQLLHIDAQMYQNTGKDTSKAEMESIRRASAFIYRLIKGIDYDKGQRFIQ
Ga0210084_1079692	Ga0210084_10796923	F041807	MARLELTLNFPKSFQIKTFNVKSEKTLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPVERDFQR
Ga0210084_1082246	Ga0210084_10822462	F073570	DILNTTLHLMYQKRVPVGSLNNLQEENKETSHKFIIENNLIVYEKYDRYGKLISRVPWLPKTIDEKV
Ga0210084_1082856	Ga0210084_10828561	F054044	LPFKLDKILMNYRNSDRLNHLPADRLGMSNTVGILVLVFALTALILLFLDFSFRSAADQEECLQLVRALGLNSLSLVPSGRPLRNPGAIDPSIDLRFDPKLWRTQK
Ga0210084_1085752	Ga0210084_10857521	F045356	MKITIHIFLFLTILVASISLYTNADAQLKPNVKVSPTCGDTSGYGMKLNVNGFEPNSNVGWKLVHPETQTSPTYGYFATNKTGGFSESEYIEGELETGKYEIQFFDDANNDGKPDQGKKEFIVSMSTPCN
Ga0210084_1100498	Ga0210084_11004981	F076224	NLKYDSTFKYYSELKSGHPFTVVIDSNICRVDIPDFTNPEISIPEIASIDPLIEQATNNIHFYAYKIPKIEKSKSEIKIEYYNDDSVYSYVVNYNMLDIDSIVQANAGTDFYNLERLKEARPFDDTMLIKYQFDRDYYNRYYSDDEFKKQMEELQKELQQLSKEVKNQKIRVHSEVTKSPKK
Ga0210084_1106194	Ga0210084_11061941	F040632	RVIMSNRSGHAGSIEREIEELRDPSNTPDMVHVVVSTREEELLWAVFDGFSELPTVRVTGCSTLPQTRQICAADPPSYLIIDMTLLDHEPMDLITLANLSNCRSHIVALTDHPVFEIGARFGKARLTFLQKPVSAHDLLLLLRLRIGECYEQQAGVC
Ga0210084_1112252	Ga0210084_11122521	F094484	MKRLALALLAFGLMAAAANTAQAEGRRMIVFALYGPSGTTGSTATTTVIDFTTQVACREARDALRNAKAPGFGLF
Ga0210084_1112958	Ga0210084_11129581	F044506	MMEQWNSGIMGFGMMQCLINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPEKIRRPQKTSIFSVGCRNSETLNYTVLGTATAPKGGRG
Ga0210084_1119603	Ga0210084_11196032	F090405	MKSALAFVFAIGLLVPGIAASDPSDCGRLMYQITHYEDMVGRAEALGRDDWAEKTQRHVDILETRLADRCPAFSARDEQQEAARQMALLLKMAATAAAKFFTMGMY
Ga0210084_1119874	Ga0210084_11198742	F016277	MTYYINRQEGRYNETCDEYATRTEAYAMLREYQVADHGRAYYYLSTTPKSNWN
Ga0210084_1120040	Ga0210084_11200401	F059979	MKSFLLVLAQLSLVTLVYVFAYRAGYRSAQSKAISVVKKFADPVTCLLDSLKDTIDESVKDEDKNG
Ga0210084_1127496	Ga0210084_11274962	F097165	MPETNIPPCLTHGARPRALHTHDFAGIITVLDLLINTVSGVGTVSYSRCEYGYSYNFEGVVRALEDLNTSISGIQGGGGDDIAA
Ga0210084_1132931	Ga0210084_11329311	F036767	SKVPELIGKHPGVIAPVTICKPKPLEFIKPASASRVSGSMEVEVKIREGNEELERNLKKIVLTIDGNRFEFDKPPYKVYFDTSHARYRVITLTAEALGKDEEQEDAVLSSFYTNVIAENGECDKTKPLLLFAGVFEPKIENRRETWTPEMYSKAYTFSEKMMSHLMH
Ga0210084_1135293	Ga0210084_11352931	F023896	ALPFLVYLTGEFTLGPYARGGAARFMGDFYADLGRLRPVAWTLLLGPVALVIFWRILVAYAWPRAGE

Scaffold ID

Protein ID

Family

Sequence

Ga0210084_1000411

Ga0210084_10004113

F048676

MLFRYSRLCGTASDAVDAVKSEIPQGFKLLKFKMSEYLKNMVKLTISEI

Ga0210084_1005440

Ga0210084_10054404

F078289

MKKTVIILMTLFIVVPLYGFNSLVRHEDIPKMRELGVSQEVIQYFISNQTSSVSSEDVIKMKQSGLKNDDIMSAIKSDLYRPEQKSTSMKEAELIAKLKESGMSDEAVLQFIQTVKSTRRVDSDGNMTKQYTNESQRTQYPTEGATFPKPDNYGYDPINGRFLLLVNPQN

Ga0210084_1007207

Ga0210084_10072071

F048676

MLFRYSRLCGTASDAVDAVKLEVLQDFKLLQFKMLEYLKNIVKLTISKI

Ga0210084_1009478

Ga0210084_10094781

F047065

MTDLLNKFSEAAKVVSSSKTHMWECVNRAYVDHLSDISTDILPEEIQIFYDSIKLRITSVEVLGHIDNDEASYIANDIMYMADVISSDLRKP

Ga0210084_1010095

Ga0210084_10100953

F076109

MEVLFKILFVVAFIGFILCLCVFAVGLFMAFQKNELPDLEDV

Ga0210084_1011701

Ga0210084_10117012

F076223

MRQDVHQSAIMGCRQRRSILTAGLAMIFMLIMAAAPAPLQAANQVAELMLSDHADAKGVVSEHQSKFSSSVGEIHGTALISGAKKGQEVTTELFYMTRNLSILTSRDDLPDDGEVTLTFAFPKPEKGWPAGNYKLVVSIAGGGTKTVTFQVK

Ga0210084_1013622

Ga0210084_10136224

F079928

MTKIPTLYDKLKPRVRAKLKENEGKYSSSVRLVLAKLENTYFIGDLTIEELRQVHLFSDTSYVDQTAISLMWGDEIFDNYEGNN

Ga0210084_1018197

Ga0210084_10181971

F021446

MKTLSIALMATFMLVLAATSTGQAQSAEDGYNDPNPGGKYVYRGCNLTQVIFIQGDKLSEINELTLIIEVQGGQNSHTLRLTFPILAKRQEVNKLILDYQWPLGGDTYEATIIGDTLTNRKTKGYLAGIREEVFTRE

Ga0210084_1019830

Ga0210084_10198302

F076109

MEVIFNIMFFVSVIAAIFCLCVFLGSLFILFQKNELPDIEDV

Ga0210084_1024930

Ga0210084_10249301

F076109

MGVLFSILFVIAVIATIICLCVFLGSLFNLFKKNEMLDIEDG

Ga0210084_1031553

Ga0210084_10315532

F058158

MDQIMIEKQKNYKSDFTKTEKDDLDIWELHVKEREQILAQIAKAARISRIRTWIELIFMLGFICYMLYDIYKDGDLDTIIK

Ga0210084_1032365

Ga0210084_10323652

F031307

MSKIQTYFGFTNGKLVSVLQSVNNDVNQAIDCNYYITEPQEVEKQVAKWKQDNSE

Ga0210084_1036225

Ga0210084_10362251

F076109

MEVLFKILFFVSVVAAILCLCVFLGSLFILFQKNELPDIEDV

Ga0210084_1037449

Ga0210084_10374492

F034003

MKKRRKRNSALKKTNQLSFDFNLNDPIEIHTPKSNISDLRRELAWEHRPIIEIVKS

Ga0210084_1038012

Ga0210084_10380123

F062490

MTRGLFAGFFITLAFVAVVLVVLFGIFTLVSYLAGPVGG

Ga0210084_1038248

Ga0210084_10382481

F101182

MDTYEEGLQYERKMDRISEQIEELMLDAMIVALKKIRDRNLFYNESEIRPHNDPY

Ga0210084_1044695

Ga0210084_10446952

F099323

VNKILGFWHKLKAFLGHRLILELAILGSFIAFTINPGSLGDIMRICGAIFLINVLLGNYHIGDLTEGHLVVLGIFLLMLLMNALMPDQMIHSRSLRYFLTLPGMILAIHCLSKRTKPDSKNLVLYCSIAVLALTIQFVAYHTVERVVNSGGL

Ga0210084_1046728

Ga0210084_10467282

F010686

VRVLDFCGQATKGVWGMSRCQKAMKGVEVCEKPGGIDKRVLILGYPNQRTLNP

Ga0210084_1048126

Ga0210084_10481261

F000352

MKTIELTDSDCTFIHYVLRMYAQQTPGLDSDDKEEIREVAAKFK

Ga0210084_1048754

Ga0210084_10487541

F026597

MFERHRLIVSFSLALLIIAVVGVTVSSFSPSKKSEYFKELKQIYNTVNNYDNKEIYSWEAAKNTLVDLNYWFDFIPRYDAISDEDNDVLVLQEKVRDLTIRQQLRTLPEIRKYFGEYLSDKLYGLDYKVTILNDERNKIIVFTHDSFTGRSALEKFHNTVANDLRALGFKQIRYKWYELEKLKEEKYI

Ga0210084_1048886

Ga0210084_10488862

F040633

KAAFLSGCESHPAILLQPEAIGAVMEVTKWLKPLM

Ga0210084_1049353

Ga0210084_10493531

F044508

RSYKTEIKKKLKISGRQQRWPRPLPGAILVPPALLVVAD

Ga0210084_1049722

Ga0210084_10497221

F087210

ALAGAGTALAHTPDTGFLGNFGHQLTSLHHSPAAILLGVLVVALMLVAFRNRTAR

Ga0210084_1066471

Ga0210084_10664711

F052686

MTEKPRGKAPVPPTAGNDPGHLGVDDRGNVTWEWTDERDLQADDTLGAAERVRALVDP

Ga0210084_1069384

Ga0210084_10693841

F048318

MATLENVRLAITASTEKSGYSHIAYSYELHPSELDCKEQREYTVKTDLWGEDLIDDDVLAWGKDEHKVKFDASSPCEAIKVDRVFEIETKVLDEDFFGDDEVYITVEASSGLGPDAAGEDPVMGKSNTVIGDF

Ga0210084_1073631

Ga0210084_10736312

F054265

VLTIVVVATWGVPPLEPPDEQSFRTVYFLRMALGNVLSLTVGAFLAAGAVSLGLRFAGKATYPRGAIGGAILGGPVGSISAGVGPCMLLISSSDPNWAMIMIERAFLVGGLMGILNGAVAGLVIVFFIQRHSAAGGKTSESEE

Ga0210084_1078260

Ga0210084_10782601

F074578

MGRMVQAPLNSLTVGADATQDLWSLMAAATNKLVLHGWEITSDAVAATLMEVTLHRISGTNSGSAVTEVKLDTDDGDITGIVLSVGTTISTSTGILAGYQWEQLGPLGQVYTPEMRPVIEVSTGIALICNTADAFEMSGWICWEEI

Ga0210084_1078291

Ga0210084_10782911

F019312

MMTHTEAIMKAQIVFEEALTDKETIDQLLHIDAQMYQNTGKDTSKAEMESIRRASAFIYRLIKGIDYDKGQRFIQ

Ga0210084_1079692

Ga0210084_10796923

F041807

MARLELTLNFPKSFQIKTFNVKSEKTLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPVERDFQR

Ga0210084_1082246

Ga0210084_10822462

F073570

DILNTTLHLMYQKRVPVGSLNNLQEENKETSHKFIIENNLIVYEKYDRYGKLISRVPWLPKTIDEKV

Ga0210084_1082856

Ga0210084_10828561

F054044

LPFKLDKILMNYRNSDRLNHLPADRLGMSNTVGILVLVFALTALILLFLDFSFRSAADQEECLQLVRALGLNSLSLVPSGRPLRNPGAIDPSIDLRFDPKLWRTQK

Ga0210084_1085752

Ga0210084_10857521

F045356

MKITIHIFLFLTILVASISLYTNADAQLKPNVKVSPTCGDTSGYGMKLNVNGFEPNSNVGWKLVHPETQTSPTYGYFATNKTGGFSESEYIEGELETGKYEIQFFDDANNDGKPDQGKKEFIVSMSTPCN

Ga0210084_1100498

Ga0210084_11004981

F076224

NLKYDSTFKYYSELKSGHPFTVVIDSNICRVDIPDFTNPEISIPEIASIDPLIEQATNNIHFYAYKIPKIEKSKSEIKIEYYNDDSVYSYVVNYNMLDIDSIVQANAGTDFYNLERLKEARPFDDTMLIKYQFDRDYYNRYYSDDEFKKQMEELQKELQQLSKEVKNQKIRVHSEVTKSPKK

Ga0210084_1106194

Ga0210084_11061941

F040632

RVIMSNRSGHAGSIEREIEELRDPSNTPDMVHVVVSTREEELLWAVFDGFSELPTVRVTGCSTLPQTRQICAADPPSYLIIDMTLLDHEPMDLITLANLSNCRSHIVALTDHPVFEIGARFGKARLTFLQKPVSAHDLLLLLRLRIGECYEQQAGVC

Ga0210084_1112252

Ga0210084_11122521

F094484

MKRLALALLAFGLMAAAANTAQAEGRRMIVFALYGPSGTTGSTATTTVIDFTTQVACREARDALRNAKAPGFGLF

Ga0210084_1112958

Ga0210084_11129581

F044506

MMEQWNSGIMGFGMMQCLINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPEKIRRPQKTSIFSVGCRNSETLNYTVLGTATAPKGGRG

Ga0210084_1119603

Ga0210084_11196032

F090405

MKSALAFVFAIGLLVPGIAASDPSDCGRLMYQITHYEDMVGRAEALGRDDWAEKTQRHVDILETRLADRCPAFSARDEQQEAARQMALLLKMAATAAAKFFTMGMY

Ga0210084_1119874

Ga0210084_11198742

F016277

MTYYINRQEGRYNETCDEYATRTEAYAMLREYQVADHGRAYYYLSTTPKSNWN

Ga0210084_1120040

Ga0210084_11200401

F059979

MKSFLLVLAQLSLVTLVYVFAYRAGYRSAQSKAISVVKKFADPVTCLLDSLKDTIDESVKDEDKNG

Ga0210084_1127496

Ga0210084_11274962

F097165

MPETNIPPCLTHGARPRALHTHDFAGIITVLDLLINTVSGVGTVSYSRCEYGYSYNFEGVVRALEDLNTSISGIQGGGGDDIAA

Ga0210084_1132931

Ga0210084_11329311

F036767

SKVPELIGKHPGVIAPVTICKPKPLEFIKPASASRVSGSMEVEVKIREGNEELERNLKKIVLTIDGNRFEFDKPPYKVYFDTSHARYRVITLTAEALGKDEEQEDAVLSSFYTNVIAENGECDKTKPLLLFAGVFEPKIENRRETWTPEMYSKAYTFSEKMMSHLMH

Ga0210084_1135293

Ga0210084_11352931

F023896

ALPFLVYLTGEFTLGPYARGGAARFMGDFYADLGRLRPVAWTLLLGPVALVIFWRILVAYAWPRAGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025564: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordC_D2 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences