Metagenome Family F076109

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076109
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	42 residues
Representative Sequence	MEVLFKILFVIAVIATILCLCVFLGSLFILFQKNELPDIEDV
Number of Associated Samples	63
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.05 %
% of genes near scaffold ends (potentially truncated)	26.27 %
% of genes from short scaffolds (< 2000 bps)	81.36 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.966 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment (27.966 % of family members)
Environment Ontology (ENVO)	Unclassified (35.593 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline) (42.373 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.14% β-sheet: 0.00% Coil/Unstructured: 52.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF01381	HTH_3	7.63
PF07238	PilZ	7.63
PF14659	Phage_int_SAM_3	2.54
PF00589	Phage_integrase	2.54
PF03069	FmdA_AmdA	1.69
PF03372	Exo_endo_phos	1.69
PF00216	Bac_DNA_binding	0.85
PF04545	Sigma70_r4	0.85
PF01663	Phosphodiest	0.85
PF02899	Phage_int_SAM_1	0.85
PF02230	Abhydrolase_2	0.85
PF13424	TPR_12	0.85
PF03740	PdxJ	0.85
PF12675	DUF3795	0.85
PF12773	DZR	0.85
PF01885	PTS_2-RNA	0.85
PF02730	AFOR_N	0.85
PF04989	CmcI	0.85
PF03692	CxxCxxCC	0.85
PF13183	Fer4_8	0.85
PF00078	RVT_1	0.85
PF13091	PLDc_2	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	1.69
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.85
COG0854	Pyridoxine 5'-phosphate synthase PdxJ	Coenzyme transport and metabolism [H]	0.85
COG1859	RNA:NAD 2'-phosphotransferase, TPT1/KptA family	Translation, ribosomal structure and biogenesis [J]	0.85
COG2414	Aldehyde:ferredoxin oxidoreductase	Energy production and conversion [C]	0.85
COG3510	Cephalosporin hydroxylase	Defense mechanisms [V]	0.85
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.85
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.81 %
Unclassified	root	N/A	21.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.81 %
Unclassified	root	N/A	21.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.97 %
Unclassified	root	N/A	21.19 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.85 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.95 %
Unclassified	root	N/A	21.19 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.69 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.85 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	64.41 %
Unclassified	root	N/A	21.19 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.69 %
Methanomada group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group	0.85 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	64.41 %
Unclassified	root	N/A	21.19 %
candidate division Kazan-3B-28	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division Kazan-3B-28	1.69 %
Methanococci	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanococci	0.85 %

Name	Rank	Taxonomy	Distribution
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	58.47 %
Unclassified	root	N/A	21.19 %
candidate division Kazan bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division Kazan-3B-28 → candidate division Kazan bacterium	1.69 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.69 %
Methanococcales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanococci → Methanococcales	0.85 %

Name	Rank	Taxonomy	Distribution
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	54.24 %
Unclassified	root	N/A	21.19 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.69 %
candidate division Kazan bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division Kazan-3B-28 → candidate division Kazan bacterium	1.69 %
Desulfosudaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfosudaceae	0.85 %
Methanococcaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanococci → Methanococcales → Methanococcaceae	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Desulfobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae	47.46 %
Unclassified	root	N/A	21.19 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.69 %
candidate division Kazan bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division Kazan-3B-28 → candidate division Kazan bacterium	1.69 %
Desulfosudis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfosudaceae → Desulfosudis	0.85 %
Methanococcus	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanococci → Methanococcales → Methanococcaceae → Methanococcus	0.85 %

Name	Rank	Taxonomy	Distribution
Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	47.46 %
Unclassified	root	N/A	21.19 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.69 %
candidate division Kazan bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division Kazan-3B-28 → candidate division Kazan bacterium	1.69 %
Desulfosudis oleivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfosudaceae → Desulfosudis → Desulfosudis oleivorans	0.85 %
Methanococcus maripaludis	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanococci → Methanococcales → Methanococcaceae → Methanococcus → Methanococcus maripaludis	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000118\|TDF_OR_ARG05_123mDRAFT_c1013428	Not Available	676	Open in IMG/M
3300000122\|TDF_OR_ARG04_123mDRAFT_c1006322	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1135	Open in IMG/M
3300000242\|TDF_OR_ARG05_123mDRAFT_1001005	All Organisms → cellular organisms → Bacteria → Proteobacteria	8461	Open in IMG/M
3300000242\|TDF_OR_ARG05_123mDRAFT_1006832	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3101	Open in IMG/M
3300000242\|TDF_OR_ARG05_123mDRAFT_1039513	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300000242\|TDF_OR_ARG05_123mDRAFT_1085069	Not Available	607	Open in IMG/M
3300000242\|TDF_OR_ARG05_123mDRAFT_1113661	Not Available	514	Open in IMG/M
3300000242\|TDF_OR_ARG05_123mDRAFT_1119415	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	500	Open in IMG/M
3300000792\|BS_KBA_SWE02_21mDRAFT_10119131	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	662	Open in IMG/M
3300001685\|JGI24024J18818_10036851	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1879	Open in IMG/M
3300004008\|Ga0055446_10165655	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	643	Open in IMG/M
3300004008\|Ga0055446_10210748	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	581	Open in IMG/M
3300004023\|Ga0055441_10029102	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1149	Open in IMG/M
3300004028\|Ga0055447_10207956	Not Available	633	Open in IMG/M
3300004028\|Ga0055447_10294683	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	549	Open in IMG/M
3300004029\|Ga0055442_10109445	Not Available	835	Open in IMG/M
3300004073\|Ga0055516_10049095	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	858	Open in IMG/M
3300004073\|Ga0055516_10153688	Not Available	563	Open in IMG/M
3300004147\|Ga0055515_10059078	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division Kazan-3B-28 → candidate division Kazan bacterium	893	Open in IMG/M
3300005214\|Ga0069002_10142095	Not Available	633	Open in IMG/M
3300005588\|Ga0070728_10021775	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	4731	Open in IMG/M
3300005588\|Ga0070728_10131065	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1462	Open in IMG/M
3300005588\|Ga0070728_10425332	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	702	Open in IMG/M
3300005589\|Ga0070729_10354019	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	819	Open in IMG/M
3300005589\|Ga0070729_10635353	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	576	Open in IMG/M
3300005590\|Ga0070727_10727529	Not Available	557	Open in IMG/M
3300005590\|Ga0070727_10782437	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	535	Open in IMG/M
3300005601\|Ga0070722_10003121	All Organisms → cellular organisms → Bacteria	4441	Open in IMG/M
3300005609\|Ga0070724_10099156	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1258	Open in IMG/M
3300005612\|Ga0070723_10352410	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	704	Open in IMG/M
3300005612\|Ga0070723_10399191	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	665	Open in IMG/M
3300005832\|Ga0074469_10038085	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	10276	Open in IMG/M
3300005832\|Ga0074469_11269675	All Organisms → cellular organisms → Bacteria	5668	Open in IMG/M
3300005920\|Ga0070725_10183333	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfosudaceae → Desulfosudis → Desulfosudis oleivorans	908	Open in IMG/M
3300005920\|Ga0070725_10283193	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	727	Open in IMG/M
3300006467\|Ga0099972_10566713	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	3058	Open in IMG/M
3300006467\|Ga0099972_12596888	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1721	Open in IMG/M
3300006467\|Ga0099972_12705314	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	601	Open in IMG/M
3300006467\|Ga0099972_12947060	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division Kazan-3B-28 → candidate division Kazan bacterium	1785	Open in IMG/M
3300006467\|Ga0099972_12959522	Not Available	506	Open in IMG/M
3300006467\|Ga0099972_13388304	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	3627	Open in IMG/M
3300008517\|Ga0111034_1105041	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1806	Open in IMG/M
3300009509\|Ga0123573_10167234	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	2192	Open in IMG/M
3300010392\|Ga0118731_100611235	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1459	Open in IMG/M
3300010392\|Ga0118731_107829769	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	657	Open in IMG/M
3300010392\|Ga0118731_108351612	Not Available	567	Open in IMG/M
3300010392\|Ga0118731_110246231	Not Available	951	Open in IMG/M
3300010392\|Ga0118731_110586740	Not Available	589	Open in IMG/M
3300010392\|Ga0118731_113746674	All Organisms → cellular organisms → Bacteria → Proteobacteria	3222	Open in IMG/M
3300010392\|Ga0118731_114145916	Not Available	1190	Open in IMG/M
3300010392\|Ga0118731_115634040	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
3300010412\|Ga0136852_10274873	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1665	Open in IMG/M
3300010430\|Ga0118733_100146072	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	4721	Open in IMG/M
3300010430\|Ga0118733_100357672	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	2892	Open in IMG/M
3300010430\|Ga0118733_105274239	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300010430\|Ga0118733_105481082	Not Available	668	Open in IMG/M
3300010430\|Ga0118733_105952155	Not Available	639	Open in IMG/M
3300010430\|Ga0118733_106532526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	608	Open in IMG/M
3300011118\|Ga0114922_10505700	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	999	Open in IMG/M
3300011118\|Ga0114922_11455280	Not Available	551	Open in IMG/M
3300011256\|Ga0151664_1013740	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	590	Open in IMG/M
3300011257\|Ga0151658_1116090	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1246	Open in IMG/M
3300011257\|Ga0151658_1211029	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300022201\|Ga0224503_10065012	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1117	Open in IMG/M
3300022201\|Ga0224503_10136254	Not Available	782	Open in IMG/M
3300022201\|Ga0224503_10173573	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	695	Open in IMG/M
3300022218\|Ga0224502_10078413	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1247	Open in IMG/M
3300022307\|Ga0224507_10150077	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanococci → Methanococcales → Methanococcaceae → Methanococcus → Methanococcus maripaludis	928	Open in IMG/M
(restricted) 3300022913\|Ga0233404_10076497	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	780	Open in IMG/M
(restricted) 3300022938\|Ga0233409_10053449	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1187	Open in IMG/M
(restricted) 3300022938\|Ga0233409_10154896	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	756	Open in IMG/M
(restricted) 3300023085\|Ga0233406_10011392	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	981	Open in IMG/M
(restricted) 3300023086\|Ga0233407_10044434	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	656	Open in IMG/M
(restricted) 3300023089\|Ga0233408_10126168	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	565	Open in IMG/M
(restricted) 3300024519\|Ga0255046_10150589	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1030	Open in IMG/M
(restricted) 3300024519\|Ga0255046_10197185	Not Available	913	Open in IMG/M
(restricted) 3300024529\|Ga0255044_10413850	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	564	Open in IMG/M
3300025557\|Ga0210141_1000159	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	9816	Open in IMG/M
3300025557\|Ga0210141_1000552	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6673	Open in IMG/M
3300025557\|Ga0210141_1011398	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1736	Open in IMG/M
3300025557\|Ga0210141_1043123	Not Available	861	Open in IMG/M
3300025564\|Ga0210084_1010095	Not Available	1711	Open in IMG/M
3300025564\|Ga0210084_1019830	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300025564\|Ga0210084_1024930	Not Available	1118	Open in IMG/M
3300025564\|Ga0210084_1036225	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	938	Open in IMG/M
3300025977\|Ga0210072_1043667	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	597	Open in IMG/M
3300025983\|Ga0210106_1086016	Not Available	519	Open in IMG/M
3300026352\|Ga0210107_1030915	Not Available	815	Open in IMG/M
3300027742\|Ga0209121_10099233	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1244	Open in IMG/M
3300027758\|Ga0209379_10021195	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2722	Open in IMG/M
3300027758\|Ga0209379_10033689	All Organisms → cellular organisms → Bacteria → Proteobacteria	2036	Open in IMG/M
3300027758\|Ga0209379_10050946	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300027758\|Ga0209379_10090205	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1114	Open in IMG/M
3300027758\|Ga0209379_10144634	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	838	Open in IMG/M
3300027790\|Ga0209273_10249657	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	732	Open in IMG/M
3300027820\|Ga0209578_10298559	Not Available	749	Open in IMG/M
3300027828\|Ga0209692_10440253	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	551	Open in IMG/M
3300027834\|Ga0209344_10282758	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	806	Open in IMG/M
3300027845\|Ga0209271_10002371	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	6860	Open in IMG/M
3300027845\|Ga0209271_10041182	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1920	Open in IMG/M
3300027845\|Ga0209271_10057754	All Organisms → cellular organisms → Bacteria	1614	Open in IMG/M
3300027852\|Ga0209345_10200497	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1258	Open in IMG/M
3300027858\|Ga0209013_10008665	All Organisms → cellular organisms → Bacteria	8452	Open in IMG/M
3300027858\|Ga0209013_10033313	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	3783	Open in IMG/M
3300027858\|Ga0209013_10097617	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1930	Open in IMG/M
(restricted) 3300027861\|Ga0233415_10026618	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	2326	Open in IMG/M
(restricted) 3300027861\|Ga0233415_10090481	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1334	Open in IMG/M
3300027967\|Ga0209272_10099949	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300027967\|Ga0209272_10272369	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	581	Open in IMG/M
(restricted) 3300028045\|Ga0233414_10129382	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1106	Open in IMG/M
3300031578\|Ga0307376_10395841	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	909	Open in IMG/M
3300032231\|Ga0316187_10191131	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1584	Open in IMG/M
3300032258\|Ga0316191_10025474	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	4462	Open in IMG/M
3300032260\|Ga0316192_10109829	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1932	Open in IMG/M
3300032263\|Ga0316195_10053405	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2085	Open in IMG/M
3300032263\|Ga0316195_10428182	Not Available	701	Open in IMG/M
3300032272\|Ga0316189_11193145	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	575	Open in IMG/M
3300033429\|Ga0316193_10326849	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1217	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.15%
Terrestrial	Environmental → Terrestrial	0.85%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	95.76%
Sediment	Environmental → Aquatic → Sediment	3.39%
Soil	Environmental → Terrestrial → Soil	0.85%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	48.31%
Wetlands	Environmental → Aquatic → Marine → Wetlands	17.80%
Inlet	Environmental → Aquatic → Marine → Inlet	7.63%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.63%
Oil Seeps	Environmental → Aquatic → Marine → Oil Seeps	5.93%
Sediment	Environmental → Aquatic → Marine → Sediment	4.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.39%
Strait	Environmental → Aquatic → Marine → Strait	2.54%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.69%
Clay	Environmental → Terrestrial → Soil → Clay	0.85%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	46.61%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	17.80%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	7.63%
Unclassified	Environmental → Aquatic → Marine → Oil Seeps → Unclassified	5.93%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	5.08%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	4.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.39%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	2.54%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	2.54%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.69%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.69%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	27.97%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	17.80%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	11.86%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	7.63%
Marine	Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine	5.93%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine	5.08%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	4.24%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	3.39%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	2.54%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine	2.54%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	2.54%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.69%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.69%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.69%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	1.69%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	0.85%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000118	Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 06_12.3m	Environmental	Open in IMG/M
3300000122	Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 04_12.3m	Environmental	Open in IMG/M
3300000242	Marine microbial communities from chronically polluted sediments in Tierra del Fuego: Site OR sample ARG 05_12.3m	Environmental	Open in IMG/M
3300000792	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21m	Environmental	Open in IMG/M
3300001685	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2	Environmental	Open in IMG/M
3300004008	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordB_D2	Environmental	Open in IMG/M
3300004023	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordA_D2	Environmental	Open in IMG/M
3300004028	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordC_D2	Environmental	Open in IMG/M
3300004029	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordB_D2	Environmental	Open in IMG/M
3300004073	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_CordB_D2	Environmental	Open in IMG/M
3300004147	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_CordA_D2	Environmental	Open in IMG/M
3300005214	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordC_D2	Environmental	Open in IMG/M
3300005588	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1	Environmental	Open in IMG/M
3300005589	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.2	Environmental	Open in IMG/M
3300005590	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2	Environmental	Open in IMG/M
3300005601	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1	Environmental	Open in IMG/M
3300005609	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1	Environmental	Open in IMG/M
3300005612	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2	Environmental	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300005920	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2	Environmental	Open in IMG/M
3300006467	Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935	Environmental	Open in IMG/M
3300008517	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4	Environmental	Open in IMG/M
3300009509	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11	Environmental	Open in IMG/M
3300010392	Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385	Environmental	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300010430	Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples	Environmental	Open in IMG/M
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental	Open in IMG/M
3300011256	Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, total	Environmental	Open in IMG/M
3300011257	Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, 0.2	Environmental	Open in IMG/M
3300022201	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_21	Environmental	Open in IMG/M
3300022218	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_13	Environmental	Open in IMG/M
3300022307	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_13	Environmental	Open in IMG/M
3300022913 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MG	Environmental	Open in IMG/M
3300022938 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_13_MG	Environmental	Open in IMG/M
3300023085 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_5_MG	Environmental	Open in IMG/M
3300023086 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_7_MG	Environmental	Open in IMG/M
3300023089 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_11_MG	Environmental	Open in IMG/M
3300024519 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27	Environmental	Open in IMG/M
3300024529 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21	Environmental	Open in IMG/M
3300025557	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025564	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025977	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025983	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026352	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300027742	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 3 (SPAdes)	Environmental	Open in IMG/M
3300027758	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1 (SPAdes)	Environmental	Open in IMG/M
3300027790	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1 (SPAdes)	Environmental	Open in IMG/M
3300027820	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2 (SPAdes)	Environmental	Open in IMG/M
3300027828	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.2 (SPAdes)	Environmental	Open in IMG/M
3300027834	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Santa Barbara Oil Seep Sample 6 (SPAdes)	Environmental	Open in IMG/M
3300027845	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 (SPAdes)	Environmental	Open in IMG/M
3300027852	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 7 (SPAdes)	Environmental	Open in IMG/M
3300027858	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)	Environmental	Open in IMG/M
3300027861 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG	Environmental	Open in IMG/M
3300027967	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2 (SPAdes)	Environmental	Open in IMG/M
3300028045 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MG	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300032231	Coastal sediment microbial communities from Maine, United States - Cross River worm burrow 1	Environmental	Open in IMG/M
3300032258	Coastal sediment microbial communities from Maine, United States - Eddy worm burrow 2 cm	Environmental	Open in IMG/M
3300032260	Coastal sediment microbial communities from Maine, United States - Merrow Island worm burrow	Environmental	Open in IMG/M
3300032263	Coastal sediment microbial communities from Maine, United States - Phippsburg sediment 1	Environmental	Open in IMG/M
3300032272	Coastal sediment microbial communities from Maine, United States - Lowes Cove worm burrow	Environmental	Open in IMG/M
3300033429	Coastal sediment microbial communities from Maine, United States - Merrow Island sediment 2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
TDF_OR_ARG05_123mDRAFT_10134283	3300000118	Marine	MEVLFKILFFIAFIAFILCLCVFVGGLFMAFKEVELPDLEDV*
TDF_OR_ARG04_123mDRAFT_10063223	3300000122	Marine	MEVLFKILFVIAVMASIFCLCIFLGNLYILFQKNEFPDIEDV*
TDF_OR_ARG05_123mDRAFT_100100512	3300000242	Marine	MGVLFNILFVIAVIATICCLCVFIGGLFIWFQKNELPDIEDF*
TDF_OR_ARG05_123mDRAFT_10068324	3300000242	Marine	MEVLFKILFVIAFIAFILCLCVFAAGLFMAFQKNELPDLEDVKTGSNA*
TDF_OR_ARG05_123mDRAFT_10395132	3300000242	Marine	MEVLFKILFVIAFIAFILCLCVFVGGLFMAFKEVELPDFDDV*
TDF_OR_ARG05_123mDRAFT_10850692	3300000242	Marine	MELLFKILFVIAVIATICCLCVFIGGLFIWFQKNELPDIEDF*
TDF_OR_ARG05_123mDRAFT_11136611	3300000242	Marine	MEVLFKILFVIASIAFIFCLCVFITGLFNQKNSSQ
TDF_OR_ARG05_123mDRAFT_11194152	3300000242	Marine	MEVFFKILFVIASIAFIFCLCVFITGLFNGFQKNELPDFDDV*
BS_KBA_SWE02_21mDRAFT_101191312	3300000792	Marine	MEVLFKILFVIALIATIFCLCVFFGGLFIALQKNELPDIEDV*
JGI24024J18818_100368514	3300001685	Marine	MEVLFKILFVIAFIAFIFCLWVFIAGVFDAVQKNELPDIEDV*
Ga0055446_101656551	3300004008	Natural And Restored Wetlands	MEVLFKILFVIAFIGFILCLCVFAVGLFMAFQKNELPDLEDV*
Ga0055446_102107482	3300004008	Natural And Restored Wetlands	MEVFFNILFVIAVMASIFCLCIFLGNLYILFQKNEFPDIEDV*
Ga0055441_100291021	3300004023	Natural And Restored Wetlands	AIIFRGLLIMEVFFNILFVISVMASIFCLCIFLGNLYILFQKNEFPDIEDV*
Ga0055447_102079562	3300004028	Natural And Restored Wetlands	MIMEELFNLFFVISVIATIFCPCVFMGGLLIAFQKSELPDIEDV*
Ga0055447_102946832	3300004028	Natural And Restored Wetlands	MEVFFNILFVISVMASIFCLCIFLGNLYILFQKNEFPDIEDV*
Ga0055442_101094452	3300004029	Natural And Restored Wetlands	MGVLFNILFVIAVIATIICLCVFLGSLFNLFKKNEILDIEDV*
Ga0055516_100490952	3300004073	Natural And Restored Wetlands	MGVLFNILFVIAVIATICCLCVFIGGLFIWFQKNELPDIEEF*
Ga0055516_101536881	3300004073	Natural And Restored Wetlands	MGVLFNILFVIAVIATIICLCVFLGSLFNLFKKNEMLDIEDV*
Ga0055515_100590781	3300004147	Natural And Restored Wetlands	MEVLFKILIVIAFIGFILCLCVFAVGLFMAFQKNELPDLEDV*
Ga0069002_101420952	3300005214	Natural And Restored Wetlands	MEVLFKILFVIAFIAFILCLFVFVGGLFMAFKEVELPDIEDV*
Ga0070728_1002177510	3300005588	Marine Sediment	MEVLFKILFVIAFIAFILCLCVFVGGLFMAFKEVELPDMEDV*
Ga0070728_101310652	3300005588	Marine Sediment	MGVLFNILFVIAFIAFILCLCVFAVGLFMAFQKNELPDLEDV*
Ga0070728_104253323	3300005588	Marine Sediment	MEVLFNILFFVSVIAAILCLCVFLGSLFILFQKNELPDIEDV*
Ga0070729_103540192	3300005589	Marine Sediment	MELLFKILFVMAFIAFIFCLCVFAGGIFMTFQKNELPDLEDV*
Ga0070729_106353532	3300005589	Marine Sediment	MEVFFNILFVIAVIATIFCLCVFMGGLFIVFEKNEFPDIEDV*
Ga0070727_107275292	3300005590	Marine Sediment	MEVLFKILFVIASIGFIFCLCVFIAGVFDAFQKNELPEMEDV*
Ga0070727_107824371	3300005590	Marine Sediment	FLIAFIAFILCLCVFVSGLFMAFKEVELPDLEDV*
Ga0070722_100031216	3300005601	Marine Sediment	MEVLFKILFVIAFIAFILCLCVFVGGLFMAFKEVELPDMEDI*
Ga0070724_100991561	3300005609	Marine Sediment	MEILFKILFVIAVIATICCLCVFIGGLFIWFQKNELPDIED
Ga0070723_103524102	3300005612	Marine Sediment	MEVFFNILFVIAVMASIFCLCIFLGNLYILFQKNEFPD
Ga0070723_103991913	3300005612	Marine Sediment	IMEVFFNILFVIAVMASIFCLCIFLGNLYILFQKNEFPDIEDV*
Ga0074469_1003808511	3300005832	Sediment (Intertidal)	MEVLFNILFVIAVMASIFCLCIFLGNLFILFQKNELPDIEDV*
Ga0074469_112696755	3300005832	Sediment (Intertidal)	MEVLFNILFVIALIATIFCLCVFFGGLFTGFQKNELPDIEDV*
Ga0070725_101833331	3300005920	Marine Sediment	ILFVIALIATIFCLCVFIGGLFIAFQKYELPDIENV*
Ga0070725_102831933	3300005920	Marine Sediment	LIMEVLFKILFVIAFIAFIFCLCVFAGGIFMTFQKNELPDLKDV*
Ga0099972_105667134	3300006467	Marine	MGVLFNIFFVIAVIATIVCLCVFLGSLFILFQKNELPDIEDF*
Ga0099972_125968882	3300006467	Marine	MELLFKILFVIAFIAFIFCLCVFAGGIFMTFQKNELPDLEDV*
Ga0099972_127053141	3300006467	Marine	LLIMEVLFKMLFVIALIATIFCLCVFMGGLFNAFQKEELPDIEDV*
Ga0099972_129470601	3300006467	Marine	MEVLFKILFVIAFIAFILCLCVFAAGLFMAFQKNELPDLEDFKTGSNA*
Ga0099972_129595221	3300006467	Marine	MEVFFNILFVIAVMASIFCLCIFLGNLYILFQKNEF
Ga0099972_133883041	3300006467	Marine	MEVLFKILFVIASIAFIFCLCVFIAGFFDAFQKNKLPNI
Ga0111034_11050412	3300008517	Marine Sediment	MIMEVLFNILFVVSVIAAILCLCVFLGSLFILFQKNELPDIEDV*
Ga0123573_101672343	3300009509	Mangrove Sediment	MEVFFNILFVVAVIASILCLCIFLGNLLILFEKDEFPDIEDV*
Ga0118731_1006112352	3300010392	Marine	MEVLFKMLFVIALIATIFCLCVFMGGLFNAFQKEELPDIEDV*
Ga0118731_1078297692	3300010392	Marine	MEVLFKILFLIAFIAFILCLCVFVGGLFMAFKEVELPDLEDV*
Ga0118731_1083516121	3300010392	Marine	VLFKILFVIAFIAFILCLCVFVGGLFMAFKEVELPDMEDV*
Ga0118731_1102462312	3300010392	Marine	MEVLFKILFVIAFMAFILCLCVFVGGLFMAFKEVELPDIEEVEVSKGILSSNLPS*
Ga0118731_1105867401	3300010392	Marine	MEVLFKILFVISVIAAILCLCVFLGSLFILFQKNELPDIE
Ga0118731_1137466742	3300010392	Marine	MELLFKILFVMAFIAFIFCLCVFAGGIFMTFQKNELPDLKDV*
Ga0118731_1141459161	3300010392	Marine	MEVFFKILFVIASIAFIFCLCVFIAGVFDAVQKNELPDFEDV*
Ga0118731_1156340402	3300010392	Marine	MEVLFKILFVIASIAFIFCLCVFIAGFFDAFQKNKLPNIENV*
Ga0136852_102748731	3300010412	Mangrove Sediment	MEVFFNILFVIAVIASIFCLCIFLGNLLILFEKDEFPDIEDV*
Ga0118733_1001460726	3300010430	Marine Sediment	MEVLFKILFFIALIATIFCLCVFIGGLFIAFQKYELPDIENV*
Ga0118733_1003576725	3300010430	Marine Sediment	MELLFKILFVIAFIAFIFCLCVFAGGIFMTFQKNELPDLKDV*
Ga0118733_1052742391	3300010430	Marine Sediment	MEVLFKILFVIAFIAFILCLCVFAAGLFMAFQKNELPDLEDVKTG
Ga0118733_1054810822	3300010430	Marine Sediment	MEVLFKIFFVIASIGFIFCLCVFIAGVFDAFQKNELPEMEDV
Ga0118733_1059521551	3300010430	Marine Sediment	MEVLFKILFVIAFIAFILCLFVFVGGLFMAFKEVELPDMEDV*
Ga0118733_1065325261	3300010430	Marine Sediment	MDVLFNILFVIAVIATIFCLCVFMGGLFIVFEKNEFPDFEDVEVSNSG*
Ga0114922_105057002	3300011118	Deep Subsurface	MEVLFNILFVVSVIAAILCLCVFLGSLFILFQKNELPDIEDV*
Ga0114922_114552802	3300011118	Deep Subsurface	MEVLFNILFVVSVIVAILCLCVFLDSLFILFQKNELPNIEDV*
Ga0151664_10137402	3300011256	Marine	MEVLFNILIVIAVIATIICLRVFLGSLLILFQQNELRDIVDV*
Ga0151658_11160903	3300011257	Marine	MEVLFKILFVIAFIAFIFCLWVFMGGLFVAFQKNELPDIEDV*
Ga0151658_12110291	3300011257	Marine	MGVLFNILFVIAVIATIFCLCVFLGGLFILFEKDELPDIEDF*
Ga0224503_100650124	3300022201	Sediment	KILFVIAFIAFILCLFVFVGGLFMAFKEVELPDIEDV
Ga0224503_101362541	3300022201	Sediment	MGVLFNILFVIAVIATIICLCVFLGSLFNLFKKNEMLDIEDG
Ga0224503_101735732	3300022201	Sediment	MEVFFNILFVISVMASIFCLCIFLGNLYILFQKNEFPDIEDV
Ga0224502_100784134	3300022218	Sediment	KILFVFAFIAFILCLFVFVGGLFMAFKEVELPDIEDV
Ga0224507_101500773	3300022307	Sediment	MEVLFKILFVIAFIAFILCLFVFVGGLFMAFKEVELPDIED
(restricted) Ga0233404_100764972	3300022913	Seawater	MEVFFNILFVIAVMASIFCLCIFLGNLYILFQKNEFPDIEDV
(restricted) Ga0233409_100534491	3300022938	Seawater	MEVLFKILFVIALIATIFCLCVFMAGAFIAFQKNELPDIDDL
(restricted) Ga0233409_101548962	3300022938	Seawater	MEVLFKILFVIAFIAFILCLCVFVGGLFMAFKEVELPDMEDV
(restricted) Ga0233406_100113924	3300023085	Seawater	IMEVFFNILFVIAVMASIFCLCIFLGNLYILFQKNEFPDIEDV
(restricted) Ga0233407_100444342	3300023086	Seawater	MEVLFKILFVIAFIAFILCLCVFVGGLFMAFKEVELPDLEDV
(restricted) Ga0233408_101261681	3300023089	Seawater	MEVVFNILFVVSVISAILCLCMFLDSLFIAFQKNELPDIEDV
(restricted) Ga0255046_101505892	3300024519	Seawater	MGVLFNILFVVAVIAIIICLCVFLGGLFILFEKNELPDMEDV
(restricted) Ga0255046_101971852	3300024519	Seawater	MEVFFNILFVIAVIATIFCLCVFMGGLFIVLEKNEFPDIEDV
(restricted) Ga0255044_104138502	3300024529	Seawater	TIIFRGLLIMEVLFKILFVIALIATIFCLCVFIGGLFIAFQKYELPDIENV
Ga0210141_10001593	3300025557	Natural And Restored Wetlands	MEVLFKILFVIAFIAFILCLFVFVGGLFMAFQKNELPDLEDV
Ga0210141_10005528	3300025557	Natural And Restored Wetlands	MEVLFKILFFVSVIAAILCLCVFLGSLFILFQKNELPDIEDV
Ga0210141_10113982	3300025557	Natural And Restored Wetlands	MEVLFKILFVIAFIGFILCLCVFAVGLFMAFQKNELPDLEDV
Ga0210141_10431232	3300025557	Natural And Restored Wetlands	MEELFNLFFVISVIATIFCPCVFMGGLLIAFQKSELPDIEDV
Ga0210084_10100953	3300025564	Natural And Restored Wetlands	MEVLFKILFVVAFIGFILCLCVFAVGLFMAFQKNELPDLEDV
Ga0210084_10198302	3300025564	Natural And Restored Wetlands	MEVIFNIMFFVSVIAAIFCLCVFLGSLFILFQKNELPDIEDV
Ga0210084_10249301	3300025564	Natural And Restored Wetlands	MGVLFSILFVIAVIATIICLCVFLGSLFNLFKKNEMLDIEDG
Ga0210084_10362251	3300025564	Natural And Restored Wetlands	MEVLFKILFFVSVVAAILCLCVFLGSLFILFQKNELPDIEDV
Ga0210072_10436672	3300025977	Natural And Restored Wetlands	MEVLFKIFFVIAFIAFILCMFVFVGGLFMAFKEVELPDIEDV
Ga0210106_10860161	3300025983	Natural And Restored Wetlands	MEVLFKMLFVIALIATIFCLCVFIGGLFNAFQKEE
Ga0210107_10309152	3300026352	Natural And Restored Wetlands	MGVLFNILFVIAVIATIICLCVFLGSLFNLFKKNEMLDIEDV
Ga0209121_100992331	3300027742	Marine	MEALFNILFVIAFIAFILCLCVFIAGIFDAFQKNELPEIEYVVVGKGEI
Ga0209379_100211951	3300027758	Marine Sediment	FRGLLIMEVLFKILFVIAFIAFILCLCVFVGGLFMAFKEVELPDMEDV
Ga0209379_100336893	3300027758	Marine Sediment	MEVLFKILFVIAFIAFILCLCVFVGGLFMAFKEVELPDME
Ga0209379_100509461	3300027758	Marine Sediment	MEVLFKILFVIALIATIFCLCVFIGGLFIAFQKYELPDIENV
Ga0209379_100902052	3300027758	Marine Sediment	MGVLFNIFFVIAVIATIVCLCVFLGSLFILFQKNELPDIEDF
Ga0209379_101446341	3300027758	Marine Sediment	WRAIIFRGLLIMEVFFNILFVIAVMASIFCLCIFLGNLYILFQKNEFPDIEDV
Ga0209273_102496571	3300027790	Marine Sediment	MEVLFNILFFVSVIAAILCLCVFLGSLFILFQKNELPDIEDV
Ga0209578_102985591	3300027820	Marine Sediment	MEVFFKILFVIAVIATVVCLCVFIVALFDAFQKNELPD
Ga0209692_104402531	3300027828	Marine Sediment	GVLFNILFVIAFIAFILCLCVFAVGLFMAFQKNELPDLEDV
Ga0209344_102827581	3300027834	Marine	MEVLLNILFFVSVIAAILCLCVFLGSLFILFQKNELPDIEDV
Ga0209271_100023713	3300027845	Marine Sediment	MEVLFKILFVIAFIAFILCLCVFVGGLFMAFKEVELPDMEDI
Ga0209271_100411822	3300027845	Marine Sediment	MELLFKILFVMAFIAFIFCLCVFAGGIFMTFQKNELPDLEDV
Ga0209271_100577541	3300027845	Marine Sediment	MEILFKIFFVIASIGFIFCLCVFIAGVFDAFQKNELPEMEDV
Ga0209345_102004973	3300027852	Marine	MEALFNILFVIAFIAFILCLCVFIAGIFDAFQKNELPEIEDVVVGKGEI
Ga0209013_100086652	3300027858	Marine	MEVLFKILFVIAFIAFIFCLWVFIAGVFDAVQKNELPDIEDV
Ga0209013_100333137	3300027858	Marine	MEVFFKILFVIASVAFIFCLCVFIAGVFDAFQKNELPYMEDV
Ga0209013_100976173	3300027858	Marine	MEVLFKIFFVIAFIAFILCLCVFAAGLFMAFQKNELPDLEDVKTGSNA
(restricted) Ga0233415_100266183	3300027861	Seawater	MGVLFKILFFVSVIATILCLCVFLGSLFILFQKNELPDIEDV
(restricted) Ga0233415_100904812	3300027861	Seawater	MEVLFKILFVIAVIATILCLCVFLGSLFILFQKNELPDIEDV
Ga0209272_100999493	3300027967	Marine Sediment	EVLFNILFFVSVIAAILCLCVFLGSLFILFQKNELPDIEDV
Ga0209272_102723693	3300027967	Marine Sediment	ILFVIALIATIFCLCVFIGGLFIAFQKYELPDIENV
(restricted) Ga0233414_101293821	3300028045	Seawater	MEVLFNILFVVSVISAILCLCMFLDSLFILFQKNELPDIEDV
Ga0307376_103958411	3300031578	Soil	MEGLFKILFVIALIATIFCLCVFFGGLFIAVQKNELPDIEDV
Ga0316187_101911314	3300032231	Worm Burrow	MGVLFNILFVIAVMATIISLCVFLGSLIILFEKDELPDIEDF
Ga0316191_100254743	3300032258	Worm Burrow	MELFFKILFVIAFIALIFCLCVFAGGIFMTFQKNELPDLEDV
Ga0316192_101098291	3300032260	Worm Burrow	LIMEVLFKILFVIAFIAFILCLCVFVGGLFMAFKEVELPDMEDV
Ga0316195_100534053	3300032263	Sediment	MEVLFKILFVIALIAAIFCMRVFMVALFDAFQKNELPDMEDVLIGVG
Ga0316195_104281821	3300032263	Sediment	MEVLFKILFVIALIATIFCLCVFFGGLFIAVQKNELPDIEDV
Ga0316189_111931451	3300032272	Worm Burrow	MEVFFNILFVIAVMASIFCLCIFLGNLYILFQKNEFPDIEDG
Ga0316193_103268493	3300033429	Sediment	MEVLFKILFLIAFIAFILCLCVFVGGLFMAFKEVELPDLEDV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters