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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025517 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110114 | Gp0061317 | Ga0207869 |
| Sample Name | Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-5-D (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 144124973 |
| Sequencing Scaffolds | 26 |
| Novel Protein Genes | 29 |
| Associated Families | 28 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta | 1 |
| Not Available | 18 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum | 2 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza | 2 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Joint BioEnergy Institute, California, USA | |||||||
| Coordinates | Lat. (o) | 38.5402 | Long. (o) | -121.75 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000255 | Metagenome / Metatranscriptome | 1449 | Y |
| F000412 | Metagenome / Metatranscriptome | 1169 | Y |
| F000770 | Metagenome / Metatranscriptome | 897 | Y |
| F000927 | Metagenome / Metatranscriptome | 831 | Y |
| F001014 | Metagenome / Metatranscriptome | 805 | Y |
| F004046 | Metagenome / Metatranscriptome | 455 | Y |
| F004068 | Metagenome / Metatranscriptome | 454 | Y |
| F004718 | Metagenome / Metatranscriptome | 426 | Y |
| F007513 | Metagenome / Metatranscriptome | 349 | Y |
| F007677 | Metagenome / Metatranscriptome | 346 | Y |
| F019591 | Metagenome / Metatranscriptome | 228 | Y |
| F020484 | Metagenome / Metatranscriptome | 223 | Y |
| F026477 | Metagenome / Metatranscriptome | 197 | Y |
| F035610 | Metagenome / Metatranscriptome | 171 | Y |
| F036417 | Metagenome / Metatranscriptome | 170 | Y |
| F036567 | Metagenome / Metatranscriptome | 169 | Y |
| F037034 | Metagenome / Metatranscriptome | 168 | Y |
| F038940 | Metagenome / Metatranscriptome | 164 | Y |
| F040454 | Metagenome / Metatranscriptome | 161 | N |
| F046126 | Metagenome / Metatranscriptome | 151 | Y |
| F061597 | Metagenome / Metatranscriptome | 131 | Y |
| F072997 | Metagenome | 120 | Y |
| F075544 | Metagenome / Metatranscriptome | 118 | Y |
| F083626 | Metagenome / Metatranscriptome | 112 | Y |
| F086518 | Metagenome / Metatranscriptome | 110 | Y |
| F088752 | Metagenome / Metatranscriptome | 109 | N |
| F097375 | Metagenome / Metatranscriptome | 104 | Y |
| F102281 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207869_1004309 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta | 4282 | Open in IMG/M |
| Ga0207869_1004571 | Not Available | 4032 | Open in IMG/M |
| Ga0207869_1006504 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 2859 | Open in IMG/M |
| Ga0207869_1007745 | Not Available | 2401 | Open in IMG/M |
| Ga0207869_1008837 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae | 2126 | Open in IMG/M |
| Ga0207869_1009578 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum | 1976 | Open in IMG/M |
| Ga0207869_1015157 | Not Available | 1331 | Open in IMG/M |
| Ga0207869_1016156 | Not Available | 1262 | Open in IMG/M |
| Ga0207869_1019343 | Not Available | 1084 | Open in IMG/M |
| Ga0207869_1023205 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza | 939 | Open in IMG/M |
| Ga0207869_1026753 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza | 839 | Open in IMG/M |
| Ga0207869_1028491 | Not Available | 799 | Open in IMG/M |
| Ga0207869_1028562 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum | 798 | Open in IMG/M |
| Ga0207869_1034418 | Not Available | 690 | Open in IMG/M |
| Ga0207869_1034742 | Not Available | 684 | Open in IMG/M |
| Ga0207869_1035628 | Not Available | 671 | Open in IMG/M |
| Ga0207869_1036289 | Not Available | 661 | Open in IMG/M |
| Ga0207869_1038539 | Not Available | 630 | Open in IMG/M |
| Ga0207869_1038570 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 630 | Open in IMG/M |
| Ga0207869_1038978 | Not Available | 625 | Open in IMG/M |
| Ga0207869_1040502 | Not Available | 606 | Open in IMG/M |
| Ga0207869_1042084 | Not Available | 588 | Open in IMG/M |
| Ga0207869_1043081 | Not Available | 577 | Open in IMG/M |
| Ga0207869_1043190 | Not Available | 575 | Open in IMG/M |
| Ga0207869_1043225 | Not Available | 575 | Open in IMG/M |
| Ga0207869_1043418 | Not Available | 573 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207869_1004309 | Ga0207869_10043093 | F007513 | VVTVLQRVVALAVVLLVIFSTAMDHETEALEEVLRLHAFLAVVFVSHAVDGTGDTLCLVLLTLL |
| Ga0207869_1004571 | Ga0207869_10045711 | F086518 | VDGCFELNKVRAIYKPRKPPVEGEAEPPQKRAGPAGPMGLGRPAYPFSGSPRSHLWRVDSSHLLEFLSFTIAPLWTLLSWRYLRGKDRIGNPSLNLHLLCLIPKYLDLIFVGLVLWALLEDGCA |
| Ga0207869_1004571 | Ga0207869_10045715 | F020484 | MARTLDVARSEIRRDRLQRWDKMDTTLLFGINFGRIRTRWKEKFVHFAMEQCFSICSVLEIKIKIHEDEAAMGQRGIEGGDDDVKQ |
| Ga0207869_1006504 | Ga0207869_10065041 | F097375 | RKRLSGVANATRRDEIQAMEQHQTAGPNPLCEVGKTHPRDRHRMRPVEGHPGVWECSKHGIFATVIPKERAEEIERGDPFPMHDGTEGIASRTGDERPGGIIIYYRPKVG |
| Ga0207869_1007745 | Ga0207869_10077452 | F000927 | QKDYSSYFIFLYRMFNMDSGATNFMQATSKHKLSTEIFPDFIHLYSRGDKKIKNGKPLTKIKSTESFTKDLLLKFLPETSPELNILQKIFQDLTHYDKLAIQLI |
| Ga0207869_1008837 | Ga0207869_10088377 | F088752 | MMKVLQSVYNQITNILKENNVLMNITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDESYKYTNFYEEGDE |
| Ga0207869_1009578 | Ga0207869_10095782 | F036567 | VICKKLKAAVSSNFYPLFLSDLAPELNTKVVPNFIRNLLAKFQPKRIGIAGDNRKLQKLCFL |
| Ga0207869_1015157 | Ga0207869_10151571 | F004068 | MGWIGCVRCENIQRDFVAQTFALIAPVQPILHRVSCSNKMVSNAPKPYETQQNMSLGSDGMDSVDLLQKILTQLCGLNFCINYNSSARFEASIVKQRNGPKCTQTLRNKTKHEFRVQWGGSGAFVAKNSDTTSWDELLHYLH |
| Ga0207869_1016156 | Ga0207869_10161561 | F001014 | MGQVRQRSDVKPPETQVLDVKYVVRNQTDVLEQQNGVQITKMXVLDLKECIEIFQVVCLESYYSEAFNQMHADTSFRNRSGASTKWRETFENMSFGPKVVDWACSLLEN |
| Ga0207869_1019343 | Ga0207869_10193431 | F102281 | MEWIGCIRCEKSRHDFVAQTFALIAPVHPILHQVSCNYETIPNAPKHYETHQNMSLGSNGVDQVRSLRKIQCDFVARTFVLIEPVQYVLKQVSCSYGTIPNAPKYYKTHRNISLGSNGVDWVRSLRKILKXVRGTNFCINCTSSPRFAPSFMQLXNDPKCTRTKTXVLGSNAADWVHSLXKIPMXLRGTNVCIN |
| Ga0207869_1021445 | Ga0207869_10214451 | F072997 | FPFCTEFRAVTKWSQMHPNTMKHNKRXAWGPMGSIGCVRCENIRRDFVARTFALIAPVRPILHRVYCRNKMLPNAPKHYETHHNMSLGSDAVDWADLLQRILLQLCGLNFCFNCNSSAXFEPSIVNQRNGPKCTQTLRNKTKHDFRFQWGWISCIRCEKFGNDFVAXTFALIAPVQPISHRVSCSNEMVPNAPKHYETQQKMSLGSNGVDQVHSLQKLPTQVRGTIFXINWTISAHFALSLLP |
| Ga0207869_1023205 | Ga0207869_10232052 | F061597 | LDKLTDQPGNLIPLDRAEVPDLSVSGDKFDLAEDDPHDPTTTSEPEAPMQSLNQLPVVTDLVDARSA |
| Ga0207869_1026753 | Ga0207869_10267531 | F038940 | YGVKQSQFTKSTSEPRASDPEESNEAFDRAIRGWLL |
| Ga0207869_1028491 | Ga0207869_10284911 | F019591 | MGWIGCVPREKSRHDFVARAFALIALVHPVLHRVSCGYETIPNAPKHYAMHQNMSLRSNGGDWVCSLXKIPTXLRGTNFCINCTSSPRFASSFMQLXNDPKCTRTKTXVLGSNGADWVHSLRKIPMXLRGTNVCINCTSSPHFAPSFMQLQNDPKCTQTLXKAPKHE |
| Ga0207869_1028562 | Ga0207869_10285621 | F035610 | FNKAWLNMHEGTIYLTTLIELFVHIDCEKHSLRVLTSRETTKDKLANMLVSKSQAIK |
| Ga0207869_1028562 | Ga0207869_10285622 | F075544 | LRPLQVGDDVLGHPNGVVPTPFLLPNLVSNHLAIGLLFDHIGGAIAFVSPVGL |
| Ga0207869_1034418 | Ga0207869_10344181 | F000255 | MEWIGCVRCEKYRRYFVAQTFALIAPVHPVLHRVSCSYETIPNAAKHYATHQNMSLGSNGADWVRSLRKIQM |
| Ga0207869_1034742 | Ga0207869_10347421 | F026477 | MFVAWLLVDLLCFVAYHLRISCCLCAVTFQSLASSYRIELVAQGQHPASFMFSRSDLLWFALILRVGIISARLGLANGLDDPVA |
| Ga0207869_1035628 | Ga0207869_10356281 | F004046 | PPFGCRKCSVVKSGPRMLFWYEFGPTKLLPCFSAKAHPIHDFRSKTHVLGGFATFGCRKCTVAKSDPRMPFWHEFRPMKLFSRFSAKMHPILYVWSKAHVLGGFAPFGSRKCTVAKSGPRMPFGHELGPMKLFLSFLDKTHPIHYFRSKTHVLGGFPPFGCRKYSVVKSGPRMPFWHEFGPTKLLSCFSAKAHTIHDFRSKTHVLGGFEPFGSRKYTVAKSGP |
| Ga0207869_1036289 | Ga0207869_10362891 | F083626 | GRDFVARTFALIAPVHRVLHRVSCSYETIPNAPKYYKGPIGWIGCIRCKKLRRHFVGRTLALIAPVHPILHXVSCSYETIPNAPKHYETHKKMSLGSNGVDQVRWLRKLTMRLRGTNFCINYTSLVCFATSFMQLRNDPKCTQTLXNAPKHEFRVQWGGSGAFVGKNYNVTSRHELLH |
| Ga0207869_1038539 | Ga0207869_10385391 | F046126 | ETHQNKSLGSDGVDRVDLLQKILTQLCGLNFYINYNSLARFELSIVKQQNRPKCTQTLRNKTKHEFMVQWGGSGESIMKTLDTTSWHELLH |
| Ga0207869_1038570 | Ga0207869_10385702 | F036417 | MVYYARVPLRKKIPTVLVRLDTDDGVVTFRARWHRSALELQRAILFRLRQGHPLWFEDEWGHSHCFKPERVWGALVDGR |
| Ga0207869_1038978 | Ga0207869_10389781 | F000412 | AQTCSTCLEGLYRKESSGTHPCRVIDRAXEPRIPSPCSLKAITHATGCKIGSSLSRCNRGTEYNPVGMKTHIECPDIVFXKYKCPYHIKMGTYVLMDLCXAGGSVAPSQPTSLRXNXGIFAQTCSTCLEGPYRKDSSGAHPCRAIDRAXEPQIPSPCSLKAITHATGCKIGSSLSRWNRGTEYNPVGMKTHIECPNIFFXKYNSTYDI |
| Ga0207869_1040502 | Ga0207869_10405021 | F000412 | TCLEGPYRKDSYGAHSCRAIDRDREPQIPSPCSLKAITHATRSKIGSSRSRWNRGTEYYPVGMKTHIEYPDIFFXKYNSPYHIEMGTYVLIDLLXAGGSVAPAQPTSLRXNXGIFAQTCSTCLEGPYRKDSSGAHPCRAIDRAXEPRIPSPCSLKAITHATGSKIGSSRSRWNSGTEYYPVGMKTHIEYPDIFFKNIIVLT |
| Ga0207869_1042084 | Ga0207869_10420841 | F000770 | MARTCALIAPVQPILHQVLCSNERLTNAPKHYETHQNMSLGS |
| Ga0207869_1043081 | Ga0207869_10430811 | F004718 | MFRYYTELGAQWVELVQLMDKFVPLSRIGIFRNERTRSTPLDPELKYWFVS |
| Ga0207869_1043190 | Ga0207869_10431901 | F037034 | MVPNAAKWYEMHQNVSLGSNRVDRVRSLRKIRTRLRG |
| Ga0207869_1043225 | Ga0207869_10432251 | F040454 | LEFKGASPHERLKPTEEEKGQAGRPRGVEPAGLLPVGLHFFGFFFCELFDASQAYVLLNFALDSTVLPSK |
| Ga0207869_1043418 | Ga0207869_10434181 | F007677 | MHQNVSLGTNGVDRVRSLRKILTQLRGTNFCTSSARFPPSFVRQPNGPECTQMVRKTHQNVNLESNGVDRVRLLGKIPTRFRGTNFCTSSARFPPSFVRQPNGPEYAQMVRNAPKHQFRVKWGGLGAFVVKIPT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |