3300025184: Marine microbial communities from the Deep Pacific Ocean - MP2158 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025184
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054353 | Ga0208832
• Sample Name: Marine microbial communities from the Deep Pacific Ocean - MP2158 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43306442
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southwest of Acapulco, Mexico, North Pacific Ocean
• Coordinates
  • Lat. (^o): 12.0
  • Long. (^o): -108.06
  • Alt. (m): N/A
  • Depth (m): 3103.11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010197	Metagenome	307	Y
F031535	Metagenome	182	N
F065862	Metagenome	127	Y
F066126	Metagenome	127	Y
F101336	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208832_101024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	4456
Ga0208832_101029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	4435
Ga0208832_106919	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	884
Ga0208832_108649	Not Available	767
Ga0208832_115863	Not Available	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208832_101024	Ga0208832_1010246	F101336	SFIPTKIALVGESSLTSVDTFVSKGTAKTSFYGNSWQATY
Ga0208832_101029	Ga0208832_1010294	F010197	LLPNTTHKLKAFTIKHDFAQHMQKVFSRQDGILFSFEEV
Ga0208832_106919	Ga0208832_1069193	F031535	IIDSIDKPSPKATTDNIIARGPKNTRAYVAIASANQLRGLTNEVNHFQVPFKTFEFYTVNIE
Ga0208832_108649	Ga0208832_1086491	F065862	TDSERFTGAVFETESVNNTVSDRFTPAAFEIESVKLTVSDRFTAAAFEIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAVFEIESVNDTDSERFTGAVFETESVKLTDSDKFTPAVFETESVNDIDSVRFTPAVFEIESVNNTVSDRFTPAVFEIESVNDTDSDRFTGAVFEIESVKLTVSDRFTPAVFEIESVKLTVSDRFTPAAFEIESVKLTVSDRFTPAAFEIESVKLTVS
Ga0208832_115863	Ga0208832_1158632	F066126	KNFPKNKANLGGINSVGIAIKNTKTIPIYKKRLNNNDLISNI