Basic Information | |
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IMG/M Taxon OID | 3300023211 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133503 | Gp0294138 | Ga0255842 |
Sample Name | Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? CA |
Sequencing Status | Finished |
Sequencing Center | Argonne National Laboratory |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 489220314 |
Sequencing Scaffolds | 35 |
Novel Protein Genes | 36 |
Associated Families | 34 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 3 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales | 2 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 3 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 8 |
All Organisms → cellular organisms → Bacteria | 5 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 2 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium | 1 |
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source) |
Type | Engineered |
Taxonomy | Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source) |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | Fort Collins, Colorado, USA | |||||||
Coordinates | Lat. (o) | 40.585258 | Long. (o) | -105.084419 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002525 | Metagenome / Metatranscriptome | 552 | Y |
F003908 | Metagenome / Metatranscriptome | 462 | Y |
F005964 | Metagenome / Metatranscriptome | 385 | Y |
F006745 | Metagenome | 365 | Y |
F007648 | Metagenome | 347 | Y |
F009339 | Metagenome / Metatranscriptome | 319 | Y |
F013427 | Metagenome / Metatranscriptome | 271 | Y |
F013906 | Metagenome / Metatranscriptome | 267 | Y |
F014637 | Metagenome | 261 | Y |
F020435 | Metagenome | 224 | Y |
F020721 | Metagenome / Metatranscriptome | 222 | Y |
F021141 | Metagenome | 220 | Y |
F023181 | Metagenome / Metatranscriptome | 211 | Y |
F025247 | Metagenome / Metatranscriptome | 202 | Y |
F027123 | Metagenome / Metatranscriptome | 195 | Y |
F031944 | Metagenome | 181 | Y |
F033395 | Metagenome / Metatranscriptome | 177 | Y |
F033513 | Metagenome | 177 | Y |
F034611 | Metagenome / Metatranscriptome | 174 | Y |
F036939 | Metagenome | 169 | Y |
F042359 | Metagenome / Metatranscriptome | 158 | Y |
F047871 | Metagenome / Metatranscriptome | 149 | Y |
F054765 | Metagenome | 139 | Y |
F061095 | Metagenome | 132 | Y |
F071767 | Metagenome | 122 | Y |
F076269 | Metagenome / Metatranscriptome | 118 | N |
F077430 | Metagenome | 117 | Y |
F082719 | Metagenome / Metatranscriptome | 113 | Y |
F091052 | Metagenome | 108 | Y |
F095769 | Metagenome / Metatranscriptome | 105 | Y |
F097091 | Metagenome | 104 | Y |
F102098 | Metagenome / Metatranscriptome | 102 | Y |
F103340 | Metagenome / Metatranscriptome | 101 | Y |
F105218 | Metagenome / Metatranscriptome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0255842_1005246 | Not Available | 816 | Open in IMG/M |
Ga0255842_1054266 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales | 5972 | Open in IMG/M |
Ga0255842_1110018 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 834 | Open in IMG/M |
Ga0255842_1112230 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 741 | Open in IMG/M |
Ga0255842_1128712 | All Organisms → cellular organisms → Bacteria | 1376 | Open in IMG/M |
Ga0255842_1182190 | All Organisms → cellular organisms → Bacteria | 4411 | Open in IMG/M |
Ga0255842_1198776 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1555 | Open in IMG/M |
Ga0255842_1252218 | All Organisms → cellular organisms → Bacteria | 5770 | Open in IMG/M |
Ga0255842_1260316 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae | 414037 | Open in IMG/M |
Ga0255842_1268039 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 843 | Open in IMG/M |
Ga0255842_1271686 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1347 | Open in IMG/M |
Ga0255842_1278557 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1161 | Open in IMG/M |
Ga0255842_1283409 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1636 | Open in IMG/M |
Ga0255842_1296151 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1421 | Open in IMG/M |
Ga0255842_1315042 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia | 1259 | Open in IMG/M |
Ga0255842_1340472 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium | 1070 | Open in IMG/M |
Ga0255842_1348146 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum | 3638 | Open in IMG/M |
Ga0255842_1357338 | All Organisms → cellular organisms → Bacteria | 1224 | Open in IMG/M |
Ga0255842_1369687 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium | 834 | Open in IMG/M |
Ga0255842_1390769 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 2174 | Open in IMG/M |
Ga0255842_1419814 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2378 | Open in IMG/M |
Ga0255842_1450256 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 846 | Open in IMG/M |
Ga0255842_1486376 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium | 1345 | Open in IMG/M |
Ga0255842_1504408 | Not Available | 503 | Open in IMG/M |
Ga0255842_1520794 | Not Available | 1219 | Open in IMG/M |
Ga0255842_1555671 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1053 | Open in IMG/M |
Ga0255842_1577287 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 921 | Open in IMG/M |
Ga0255842_1582380 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 694 | Open in IMG/M |
Ga0255842_1605466 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 932 | Open in IMG/M |
Ga0255842_1629578 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus | 504 | Open in IMG/M |
Ga0255842_1652895 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales | 5422 | Open in IMG/M |
Ga0255842_1656748 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 762 | Open in IMG/M |
Ga0255842_1673541 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1279 | Open in IMG/M |
Ga0255842_1684123 | All Organisms → cellular organisms → Bacteria | 3460 | Open in IMG/M |
Ga0255842_1695729 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1324 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0255842_1005246 | Ga0255842_10052462 | F097091 | FRDRASILMEAKAKRKPFSTTPVVGNGHVSVEQVIKKNSE |
Ga0255842_1054266 | Ga0255842_10542664 | F025247 | MLETQSDLQRAENEVSWLAIRQPAVMRLLERELASDDNDAFAAGLALACRVLGGRTPVGDLRLDHHALAAGMAAVRAGKCDRAMVRSIRDQIEELNVVLMKQEADAVATCIAAVIWAVLDMSVRDLGDDETLVA |
Ga0255842_1104713 | Ga0255842_11047131 | F095769 | RQPRAGFLTWFGVFARRRGRADRLVLETNESRVARFVERQIEEWLGLDDEPVRGEVRID |
Ga0255842_1110018 | Ga0255842_11100182 | F042359 | SYNRTPATLALDNIGSRADGNDTLLIVNRIGGNLGIGASSLGTLFGIFYDDAEAALSFSVTGGCQLRNSITNNFPRTTPRFETFVPAGRSGWLKIFNQTGAVCITGAAINFNPNAASSAGAFNQGHNLHHLTLNNQMSYIIPVFPPSC |
Ga0255842_1112230 | Ga0255842_11122301 | F003908 | MSSVSRPVLCVALAVCAASCSSNNKKRPLTMQEMISADPLPLRKGAKWTYAVTVKRFDSEADKETTKTLEWVTEVVDARESNGVIAFRVRGWPTDLANFDGATPTVTEKTLLRSGNSFLFGASAEPTLDGAEGWFSWPVLDGQKICPSAEMVYCWQVSAVETGYALSFYTGPDEQTFEIEPGT |
Ga0255842_1128712 | Ga0255842_11287122 | F061095 | VSSRAARFAPGETVTVLVGSWAGDHAVVEHVVWSEKDRCHYFYLAQPGKNMSRGYRADELTEGFGETLS |
Ga0255842_1182190 | Ga0255842_11821902 | F020435 | VIRFSELVSALSPTQYAELALLLFLAVFAGVAIRHGGKRRAVEHAEASMLPLADDAGELR |
Ga0255842_1198776 | Ga0255842_11987763 | F023181 | LSRIYPQNRTFLRLFIDAGGMIRASVYHLHPRGAVVSLLQLVQLFPRHLRVVELVSEVHGSFLVTSNTHGVDRLEPPPEAKVERLPLSTPLGEIVARHEARITEAVKRNPERAPVTFESLDEVLASMARAHLAMARHRQKVGGLSRDELERLKGRPLSETEEQFLREVQGTEKPEPSSS |
Ga0255842_1252218 | Ga0255842_12522185 | F102098 | MTTKRLSRSSRNGFADTAGADPFAVFEIIADARKIKEQAVGDVVERAHRIEQHADGMVKTVLGTADLSTTDVPSNVIEQIVETLRAYR |
Ga0255842_1260316 | Ga0255842_1260316356 | F034611 | MEHGKTILSLTTDLLANGGFSHLKDDQVSMLHHLILRLKEPLSIIQQNLLLTFWNNADATNIPPALLYRCNTILQQHGRSPIQELYAEVEMD |
Ga0255842_1268039 | Ga0255842_12680391 | F091052 | MYILSLIGYVMIGLLLMSMMARARPRMKEPAPGKALKNIPMGLPSRFQLQRSSFFALLTGIAFGLLTGWLPLSTAGIVAAIALTTILLPMRYTFTTKGIAVGDGAFYPWNGFSGFSAKGSSLKLDHPSLF |
Ga0255842_1271686 | Ga0255842_12716863 | F027123 | MATVKRYNIFCPKCQHKFPVFASIHHTIDIDGWVKEKSDTHDCKAYADQLAKERAPRALNPIKASKKGK |
Ga0255842_1278557 | Ga0255842_12785572 | F013427 | MIDFGGTCDLAVWCKLLRDKGWTGPQIARALGKSEGYVNNLVRVVERSSPAILLRWKEEQGGQLEPVCATDWLVQVCLLPHDVQDSELAHRIAAGSRYSPRP |
Ga0255842_1283409 | Ga0255842_12834091 | F002525 | CVWAGMDSVWEQEKLEARKMPVNRADSQPSAARGVGWLCARPAG |
Ga0255842_1296151 | Ga0255842_12961511 | F103340 | GTPGGVSLTAGGGTAVMPTRDADGHAQLTSVVIETGEMQQLANPEISEPAGLRTARKAAVFAVVDSEGGAIYRAE |
Ga0255842_1315042 | Ga0255842_13150422 | F071767 | MNEDELIEEISHHDNLLRIHRRNLRALELQIAQHGPFDVPLHMQLAQDDLRAELVRLERAVRDLRARLRRSQRRRGTG |
Ga0255842_1340472 | Ga0255842_13404722 | F077430 | MYFIVEITPQGIETFLEGFEEVGEAWDVVSRLLCEARRRRRKVRYEVC |
Ga0255842_1348146 | Ga0255842_13481466 | F047871 | MWGYAEGNQTLVTIVVVIVVIAALSYVGRRLWKRER |
Ga0255842_1357338 | Ga0255842_13573382 | F021141 | MSNVLVNFRLNPDRPVRVKWLATDGVPGDGYKAQVTAVRMGGITLHMDSSAILEQTAPDPAGGIGGYLVTFNGMVGYAEDHPDRKHVEALTDAEIEYDLTFVHDDDGRLAIQDEDYRVLEQPKAMAHKISARNA |
Ga0255842_1369687 | Ga0255842_13696871 | F007648 | MAIEIAPEQEIWVTTNEAEELTGYNRRYLKQLAHKNSHLPEDERVIKVRKRSGLFYELWLPDLLRYINEIGYGPHQNKK |
Ga0255842_1390769 | Ga0255842_13907693 | F031944 | MKMRTLRKIRALAPRTLRRRDFDLSDATVEPDPGPPPEAVFDRVTGPYEHRRGYSSFGPGAVDEET |
Ga0255842_1419814 | Ga0255842_14198141 | F105218 | MRTSRKFTHALLALFALFVMSSFAMAADPGLNYPPQSESSDQKAGSLLVYNFYTSGATSGNAQNTRINITNTSTSSAAFVHLYFVGETCSIADSFICLTATQTASFLASDVDPGISGYIVAVAVDGVNGCPFAFNWLIGDEYVKLTTGHAANLGAEAFSALYAGVLPGCDANSTTATLNFNGLFGGYNLVPAALAGSNVPSRADGNDTIVILNRIGGNLGIGASTLGSLFGIFYDDAENSLSFTFSGSCQFRSTFSNAFPRLTPRFETFIPAGRSGWFKVFQQTGTVGILGAMINFNANATAAANAFNGGHNLHKLTLTTSSYIVPVFPASC |
Ga0255842_1450256 | Ga0255842_14502561 | F033395 | WGDRIEPPRGLAKIQPGMSVAEAKKLIPGLKDDHTGVREHLLLESDVRDVKLEVRVDNGIVASIVAIVQGQGLRDRLAASWGQPAITKDSLGQPETTWSSESTGWKAKLDCLERNCLLEFVPYHVLTSEFFGAHVVPPGDLANLKIGMRVAEARKLAPGPIDVRAGIPTGVDSVREFVAVDDKLGTVRAIYLNLPQHAESLIVEAWGDGWAAVEPVGKNVLVWPDPTTRWRATLRDALGYSHDLAYDNYLPAADLFGEQPDVLDAAPVLGSTVEEVKKLFPT |
Ga0255842_1486376 | Ga0255842_14863762 | F005964 | MKIRTRFTLICLALAFGSAVTIAQTQLQTPQTKDQTPDIAGAWTGTWGTYSPAQGTTPPKDICKKLDAKVELKDGVWLASFEGDCGRPYKYSIKMEGRQVGKVVMFKGTTDLGAKDGGVFDWIGRANDKEFVGFFTSAYYTGTFNLSRTK |
Ga0255842_1504408 | Ga0255842_15044082 | F082719 | MSRESDFITEARQHNRALWDALNALETLQKEWNALDYGTTLDAGAGENAGIVRTDVGAVVFGTADALRAVLNSGHAANMAKLL |
Ga0255842_1520794 | Ga0255842_15207942 | F076269 | MNFLLWLFFTALAVGIAPGFIARQLTKGRGQYVEIPGKAVTWGVGSFLLLYLAVTVPWLVLSWSGFIGAPWLITGLLLGTPASAWASKKWYRALKDGSLSGGSNKYLP |
Ga0255842_1555671 | Ga0255842_15556713 | F054765 | PPSEITDDDSLKPFPGPHERWMIERAPTLHPALAALAAGAPGVIALAKPAPHDAEPDRPTIEPTFAVVRRLGRGLPGSTVYLAGEFKYLNRDVIAKAVEAAGARLVSGPFPGTDYYVHGDWCLVQTIAQLERQGARRIRSGELEGV |
Ga0255842_1577287 | Ga0255842_15772872 | F036939 | MVAQAFKAESHEDLARAVEKLSSEEAAFFLVKLEAAIRKRKIQITGYLVAMLVWIIGMMGALVWYGTHDGFVGWVFIAPFGIVGIVLYLFGRWAERAGTVRDPAAAVAAKPAAP |
Ga0255842_1582380 | Ga0255842_15823801 | F014637 | KGEQALDRVRKARSKLSPRLIQHQFSYYTEINLLTSLGRTKEARIILEARGGVPQGEVLKLSYWIAEMHLGVAEGKLEIEESELYDRMRKGLSMTAGRDLLLLCAWAYAARGEHDEAKFAWRQARDREGSHRLDIAMPKLAEWMQAYATERPDLDAPDPDEDL |
Ga0255842_1605466 | Ga0255842_16054661 | F009339 | MAALTKPDVGHEPHNPVRDDRKLAPTEDLDREPDGVPHSVVGLTALFSVMLAMLVAFMFIGGGPVGKGAAVVLALIAIPVLVGSLRKKAQTDRDHAHPSR |
Ga0255842_1629578 | Ga0255842_16295782 | F034611 | TTDLLASGAFSHLKDEQVSALHHLILRLQEPLTVIQQKLLLTFWSHADAAVLPAALLHRCNMVLQQYGRMPIAEMYVEVEME |
Ga0255842_1652895 | Ga0255842_16528953 | F013906 | MSYAEAKEIALLRQELRACWETGDAAGANLALQRLWQVVGTDDELAAEARRWAIKLAA |
Ga0255842_1656748 | Ga0255842_16567482 | F006745 | SSAVVLYVIILVAFQVFLITVAVEAFQTDTESLAWATAAVSVALFAAAAAFLRYLRP |
Ga0255842_1673541 | Ga0255842_16735411 | F042359 | NLGAEAFSALYAGVLPGCDANSVTAALAFNGILGGYNQVPRVLASSNIPSRADGNDTIVIINRIGGNLGIGASTLGALFGIFYDDAENSLSFTYSGSCQFRSVISNAFPRLTPRFETFIPAGRSGWYKTYSQSDIGILGAQINFNANANAQANAFNGGHNLHKLTLSAANTYTVPVFPPS |
Ga0255842_1684123 | Ga0255842_16841232 | F020721 | MSTTESLETLAAEQLVTASGGVNMKLTQYGYPNDPYSDSETRKGHGAYRNLDREHSMAITDSGLRALGLTRQGVRSNPTWVDIKLKGGGTLQRRIDDRAPQGEMRADLYQPRGFDHRLPDHADVSLHR |
Ga0255842_1695729 | Ga0255842_16957293 | F033513 | MSNLKEIEQRHGRDRWKDAMFIVAALLLTALSIGSVTSKAAGTTTHRQWEVAMYESPELL |
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