NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023211

3300023211: Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? CA



Overview

Basic Information
IMG/M Taxon OID3300023211 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133503 | Gp0294138 | Ga0255842
Sample NameActivated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? CA
Sequencing StatusFinished
Sequencing CenterArgonne National Laboratory
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size489220314
Sequencing Scaffolds35
Novel Protein Genes36
Associated Families34

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria8
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePpcp Degradation By Aerobic Enrichment Cultures (Carbon Source)
TypeEngineered
TaxonomyEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationFort Collins, Colorado, USA
CoordinatesLat. (o)40.585258Long. (o)-105.084419Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002525Metagenome / Metatranscriptome552Y
F003908Metagenome / Metatranscriptome462Y
F005964Metagenome / Metatranscriptome385Y
F006745Metagenome365Y
F007648Metagenome347Y
F009339Metagenome / Metatranscriptome319Y
F013427Metagenome / Metatranscriptome271Y
F013906Metagenome / Metatranscriptome267Y
F014637Metagenome261Y
F020435Metagenome224Y
F020721Metagenome / Metatranscriptome222Y
F021141Metagenome220Y
F023181Metagenome / Metatranscriptome211Y
F025247Metagenome / Metatranscriptome202Y
F027123Metagenome / Metatranscriptome195Y
F031944Metagenome181Y
F033395Metagenome / Metatranscriptome177Y
F033513Metagenome177Y
F034611Metagenome / Metatranscriptome174Y
F036939Metagenome169Y
F042359Metagenome / Metatranscriptome158Y
F047871Metagenome / Metatranscriptome149Y
F054765Metagenome139Y
F061095Metagenome132Y
F071767Metagenome122Y
F076269Metagenome / Metatranscriptome118N
F077430Metagenome117Y
F082719Metagenome / Metatranscriptome113Y
F091052Metagenome108Y
F095769Metagenome / Metatranscriptome105Y
F097091Metagenome104Y
F102098Metagenome / Metatranscriptome102Y
F103340Metagenome / Metatranscriptome101Y
F105218Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0255842_1005246Not Available816Open in IMG/M
Ga0255842_1054266All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales5972Open in IMG/M
Ga0255842_1110018All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium834Open in IMG/M
Ga0255842_1112230All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria741Open in IMG/M
Ga0255842_1128712All Organisms → cellular organisms → Bacteria1376Open in IMG/M
Ga0255842_1182190All Organisms → cellular organisms → Bacteria4411Open in IMG/M
Ga0255842_1198776All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1555Open in IMG/M
Ga0255842_1252218All Organisms → cellular organisms → Bacteria5770Open in IMG/M
Ga0255842_1260316All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae414037Open in IMG/M
Ga0255842_1268039All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi843Open in IMG/M
Ga0255842_1271686All Organisms → cellular organisms → Bacteria → Acidobacteria1347Open in IMG/M
Ga0255842_1278557All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1161Open in IMG/M
Ga0255842_1283409All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1636Open in IMG/M
Ga0255842_1296151All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1421Open in IMG/M
Ga0255842_1315042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia1259Open in IMG/M
Ga0255842_1340472All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium1070Open in IMG/M
Ga0255842_1348146All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum3638Open in IMG/M
Ga0255842_1357338All Organisms → cellular organisms → Bacteria1224Open in IMG/M
Ga0255842_1369687All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium834Open in IMG/M
Ga0255842_1390769All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2174Open in IMG/M
Ga0255842_1419814All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2378Open in IMG/M
Ga0255842_1450256All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria846Open in IMG/M
Ga0255842_1486376All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1345Open in IMG/M
Ga0255842_1504408Not Available503Open in IMG/M
Ga0255842_1520794Not Available1219Open in IMG/M
Ga0255842_1555671All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1053Open in IMG/M
Ga0255842_1577287All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria921Open in IMG/M
Ga0255842_1582380All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium694Open in IMG/M
Ga0255842_1605466All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria932Open in IMG/M
Ga0255842_1629578All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus504Open in IMG/M
Ga0255842_1652895All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales5422Open in IMG/M
Ga0255842_1656748All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium762Open in IMG/M
Ga0255842_1673541All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1279Open in IMG/M
Ga0255842_1684123All Organisms → cellular organisms → Bacteria3460Open in IMG/M
Ga0255842_1695729All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1324Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0255842_1005246Ga0255842_10052462F097091FRDRASILMEAKAKRKPFSTTPVVGNGHVSVEQVIKKNSE
Ga0255842_1054266Ga0255842_10542664F025247MLETQSDLQRAENEVSWLAIRQPAVMRLLERELASDDNDAFAAGLALACRVLGGRTPVGDLRLDHHALAAGMAAVRAGKCDRAMVRSIRDQIEELNVVLMKQEADAVATCIAAVIWAVLDMSVRDLGDDETLVA
Ga0255842_1104713Ga0255842_11047131F095769RQPRAGFLTWFGVFARRRGRADRLVLETNESRVARFVERQIEEWLGLDDEPVRGEVRID
Ga0255842_1110018Ga0255842_11100182F042359SYNRTPATLALDNIGSRADGNDTLLIVNRIGGNLGIGASSLGTLFGIFYDDAEAALSFSVTGGCQLRNSITNNFPRTTPRFETFVPAGRSGWLKIFNQTGAVCITGAAINFNPNAASSAGAFNQGHNLHHLTLNNQMSYIIPVFPPSC
Ga0255842_1112230Ga0255842_11122301F003908MSSVSRPVLCVALAVCAASCSSNNKKRPLTMQEMISADPLPLRKGAKWTYAVTVKRFDSEADKETTKTLEWVTEVVDARESNGVIAFRVRGWPTDLANFDGATPTVTEKTLLRSGNSFLFGASAEPTLDGAEGWFSWPVLDGQKICPSAEMVYCWQVSAVETGYALSFYTGPDEQTFEIEPGT
Ga0255842_1128712Ga0255842_11287122F061095VSSRAARFAPGETVTVLVGSWAGDHAVVEHVVWSEKDRCHYFYLAQPGKNMSRGYRADELTEGFGETLS
Ga0255842_1182190Ga0255842_11821902F020435VIRFSELVSALSPTQYAELALLLFLAVFAGVAIRHGGKRRAVEHAEASMLPLADDAGELR
Ga0255842_1198776Ga0255842_11987763F023181LSRIYPQNRTFLRLFIDAGGMIRASVYHLHPRGAVVSLLQLVQLFPRHLRVVELVSEVHGSFLVTSNTHGVDRLEPPPEAKVERLPLSTPLGEIVARHEARITEAVKRNPERAPVTFESLDEVLASMARAHLAMARHRQKVGGLSRDELERLKGRPLSETEEQFLREVQGTEKPEPSSS
Ga0255842_1252218Ga0255842_12522185F102098MTTKRLSRSSRNGFADTAGADPFAVFEIIADARKIKEQAVGDVVERAHRIEQHADGMVKTVLGTADLSTTDVPSNVIEQIVETLRAYR
Ga0255842_1260316Ga0255842_1260316356F034611MEHGKTILSLTTDLLANGGFSHLKDDQVSMLHHLILRLKEPLSIIQQNLLLTFWNNADATNIPPALLYRCNTILQQHGRSPIQELYAEVEMD
Ga0255842_1268039Ga0255842_12680391F091052MYILSLIGYVMIGLLLMSMMARARPRMKEPAPGKALKNIPMGLPSRFQLQRSSFFALLTGIAFGLLTGWLPLSTAGIVAAIALTTILLPMRYTFTTKGIAVGDGAFYPWNGFSGFSAKGSSLKLDHPSLF
Ga0255842_1271686Ga0255842_12716863F027123MATVKRYNIFCPKCQHKFPVFASIHHTIDIDGWVKEKSDTHDCKAYADQLAKERAPRALNPIKASKKGK
Ga0255842_1278557Ga0255842_12785572F013427MIDFGGTCDLAVWCKLLRDKGWTGPQIARALGKSEGYVNNLVRVVERSSPAILLRWKEEQGGQLEPVCATDWLVQVCLLPHDVQDSELAHRIAAGSRYSPRP
Ga0255842_1283409Ga0255842_12834091F002525CVWAGMDSVWEQEKLEARKMPVNRADSQPSAARGVGWLCARPAG
Ga0255842_1296151Ga0255842_12961511F103340GTPGGVSLTAGGGTAVMPTRDADGHAQLTSVVIETGEMQQLANPEISEPAGLRTARKAAVFAVVDSEGGAIYRAE
Ga0255842_1315042Ga0255842_13150422F071767MNEDELIEEISHHDNLLRIHRRNLRALELQIAQHGPFDVPLHMQLAQDDLRAELVRLERAVRDLRARLRRSQRRRGTG
Ga0255842_1340472Ga0255842_13404722F077430MYFIVEITPQGIETFLEGFEEVGEAWDVVSRLLCEARRRRRKVRYEVC
Ga0255842_1348146Ga0255842_13481466F047871MWGYAEGNQTLVTIVVVIVVIAALSYVGRRLWKRER
Ga0255842_1357338Ga0255842_13573382F021141MSNVLVNFRLNPDRPVRVKWLATDGVPGDGYKAQVTAVRMGGITLHMDSSAILEQTAPDPAGGIGGYLVTFNGMVGYAEDHPDRKHVEALTDAEIEYDLTFVHDDDGRLAIQDEDYRVLEQPKAMAHKISARNA
Ga0255842_1369687Ga0255842_13696871F007648MAIEIAPEQEIWVTTNEAEELTGYNRRYLKQLAHKNSHLPEDERVIKVRKRSGLFYELWLPDLLRYINEIGYGPHQNKK
Ga0255842_1390769Ga0255842_13907693F031944MKMRTLRKIRALAPRTLRRRDFDLSDATVEPDPGPPPEAVFDRVTGPYEHRRGYSSFGPGAVDEET
Ga0255842_1419814Ga0255842_14198141F105218MRTSRKFTHALLALFALFVMSSFAMAADPGLNYPPQSESSDQKAGSLLVYNFYTSGATSGNAQNTRINITNTSTSSAAFVHLYFVGETCSIADSFICLTATQTASFLASDVDPGISGYIVAVAVDGVNGCPFAFNWLIGDEYVKLTTGHAANLGAEAFSALYAGVLPGCDANSTTATLNFNGLFGGYNLVPAALAGSNVPSRADGNDTIVILNRIGGNLGIGASTLGSLFGIFYDDAENSLSFTFSGSCQFRSTFSNAFPRLTPRFETFIPAGRSGWFKVFQQTGTVGILGAMINFNANATAAANAFNGGHNLHKLTLTTSSYIVPVFPASC
Ga0255842_1450256Ga0255842_14502561F033395WGDRIEPPRGLAKIQPGMSVAEAKKLIPGLKDDHTGVREHLLLESDVRDVKLEVRVDNGIVASIVAIVQGQGLRDRLAASWGQPAITKDSLGQPETTWSSESTGWKAKLDCLERNCLLEFVPYHVLTSEFFGAHVVPPGDLANLKIGMRVAEARKLAPGPIDVRAGIPTGVDSVREFVAVDDKLGTVRAIYLNLPQHAESLIVEAWGDGWAAVEPVGKNVLVWPDPTTRWRATLRDALGYSHDLAYDNYLPAADLFGEQPDVLDAAPVLGSTVEEVKKLFPT
Ga0255842_1486376Ga0255842_14863762F005964MKIRTRFTLICLALAFGSAVTIAQTQLQTPQTKDQTPDIAGAWTGTWGTYSPAQGTTPPKDICKKLDAKVELKDGVWLASFEGDCGRPYKYSIKMEGRQVGKVVMFKGTTDLGAKDGGVFDWIGRANDKEFVGFFTSAYYTGTFNLSRTK
Ga0255842_1504408Ga0255842_15044082F082719MSRESDFITEARQHNRALWDALNALETLQKEWNALDYGTTLDAGAGENAGIVRTDVGAVVFGTADALRAVLNSGHAANMAKLL
Ga0255842_1520794Ga0255842_15207942F076269MNFLLWLFFTALAVGIAPGFIARQLTKGRGQYVEIPGKAVTWGVGSFLLLYLAVTVPWLVLSWSGFIGAPWLITGLLLGTPASAWASKKWYRALKDGSLSGGSNKYLP
Ga0255842_1555671Ga0255842_15556713F054765PPSEITDDDSLKPFPGPHERWMIERAPTLHPALAALAAGAPGVIALAKPAPHDAEPDRPTIEPTFAVVRRLGRGLPGSTVYLAGEFKYLNRDVIAKAVEAAGARLVSGPFPGTDYYVHGDWCLVQTIAQLERQGARRIRSGELEGV
Ga0255842_1577287Ga0255842_15772872F036939MVAQAFKAESHEDLARAVEKLSSEEAAFFLVKLEAAIRKRKIQITGYLVAMLVWIIGMMGALVWYGTHDGFVGWVFIAPFGIVGIVLYLFGRWAERAGTVRDPAAAVAAKPAAP
Ga0255842_1582380Ga0255842_15823801F014637KGEQALDRVRKARSKLSPRLIQHQFSYYTEINLLTSLGRTKEARIILEARGGVPQGEVLKLSYWIAEMHLGVAEGKLEIEESELYDRMRKGLSMTAGRDLLLLCAWAYAARGEHDEAKFAWRQARDREGSHRLDIAMPKLAEWMQAYATERPDLDAPDPDEDL
Ga0255842_1605466Ga0255842_16054661F009339MAALTKPDVGHEPHNPVRDDRKLAPTEDLDREPDGVPHSVVGLTALFSVMLAMLVAFMFIGGGPVGKGAAVVLALIAIPVLVGSLRKKAQTDRDHAHPSR
Ga0255842_1629578Ga0255842_16295782F034611TTDLLASGAFSHLKDEQVSALHHLILRLQEPLTVIQQKLLLTFWSHADAAVLPAALLHRCNMVLQQYGRMPIAEMYVEVEME
Ga0255842_1652895Ga0255842_16528953F013906MSYAEAKEIALLRQELRACWETGDAAGANLALQRLWQVVGTDDELAAEARRWAIKLAA
Ga0255842_1656748Ga0255842_16567482F006745SSAVVLYVIILVAFQVFLITVAVEAFQTDTESLAWATAAVSVALFAAAAAFLRYLRP
Ga0255842_1673541Ga0255842_16735411F042359NLGAEAFSALYAGVLPGCDANSVTAALAFNGILGGYNQVPRVLASSNIPSRADGNDTIVIINRIGGNLGIGASTLGALFGIFYDDAENSLSFTYSGSCQFRSVISNAFPRLTPRFETFIPAGRSGWYKTYSQSDIGILGAQINFNANANAQANAFNGGHNLHKLTLSAANTYTVPVFPPS
Ga0255842_1684123Ga0255842_16841232F020721MSTTESLETLAAEQLVTASGGVNMKLTQYGYPNDPYSDSETRKGHGAYRNLDREHSMAITDSGLRALGLTRQGVRSNPTWVDIKLKGGGTLQRRIDDRAPQGEMRADLYQPRGFDHRLPDHADVSLHR
Ga0255842_1695729Ga0255842_16957293F033513MSNLKEIEQRHGRDRWKDAMFIVAALLLTALSIGSVTSKAAGTTTHRQWEVAMYESPELL

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