3300015191: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-10 : a,b,c samples pooled, hydrological sediment from glacier outflow)

Overview

Basic Information

• IMG/M Taxon OID: 3300015191
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121480 | Gp0191561 | Ga0167659
• Sample Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-10 : a,b,c samples pooled, hydrological sediment from glacier outflow)
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bristol
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 219250082
• Sequencing Scaffolds: 35
• Novel Protein Genes: 35
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Mimasvirus → Cronobacter virus GAP32 → Cronobacter phage vB_CsaM_GAP32	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2
Not Available	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium calvum	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root404	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	4
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes Of Arctic Soils
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → glacial feature → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.904568
  • Long. (^o): 18.607115
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001677	Metagenome / Metatranscriptome	654	Y
F003763	Metagenome / Metatranscriptome	470	Y
F005003	Metagenome / Metatranscriptome	415	Y
F009579	Metagenome / Metatranscriptome	316	Y
F010995	Metagenome	296	Y
F014679	Metagenome / Metatranscriptome	261	Y
F015992	Metagenome / Metatranscriptome	250	Y
F017706	Metagenome / Metatranscriptome	239	Y
F017937	Metagenome / Metatranscriptome	238	Y
F023252	Metagenome	211	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167659_1000012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	49192
Ga0167659_1002055	All Organisms → cellular organisms → Bacteria	7797
Ga0167659_1002102	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Mimasvirus → Cronobacter virus GAP32 → Cronobacter phage vB_CsaM_GAP32	7719
Ga0167659_1002433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7132
Ga0167659_1003001	Not Available	6254
Ga0167659_1003260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium calvum	5881
Ga0167659_1003558	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5556
Ga0167659_1004403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156	4777
Ga0167659_1005438	Not Available	4119
Ga0167659_1008294	All Organisms → cellular organisms → Bacteria	2951

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167659_1000012	Ga0167659_100001244	F010995	MASQAQRPVVILYEHALLGEGIAKYLRAQTGVEATVAPSHHPEAVRLALALDPAVVIFESSNPFQQYDLTTLAPHAVLIDVSAVITRGSAVAPCAAGFEQILQAVRDSSAAAVPGEGRPGETCTVVSRTRTLAAPTR*
Ga0167659_1002055	Ga0167659_10020553	F055453	MKIKEILKESPTDLVARFYKEASAEADRFYNLEDVKYKEKNAKYYDENFKGWFKNDIVPVFEKPSTKPQPEYRPKPVGSELQSPGYRGLQYALAAAGLPYNHGVQKYQPNAPLAPSAEMDACRNTNSN*
Ga0167659_1002102	Ga0167659_10021023	F058120	MTNNTGSLLLESIRSKDAQQALTQVQQFRDNMRNVTVGADYVMWITEPVNLTSVHKALAEDLNVPPRLLAIRRSSMNRTQKAVLLMQAIENSIKRVHTL*
Ga0167659_1002433	Ga0167659_10024333	F029582	MLARSPQRPDPEAQRNASPARRGSLRWVREVLGRSLRLEQPRQATQPAGDAQADTPLSLVMQQRAELGARLLVHDPATQVVRHLFIVHDELRNGGWTAVEALPLAVIGRAVSEAEILAVDEPSQLLATIIDALRAIRIAADARATRAAHDALEAKWEVPQMPEVSDTNFDEYELMERSWAGTVPSGLREGVHNTR*
Ga0167659_1003001	Ga0167659_100300110	F097281	MANTINKTPPVNLKEQNAIHSFRVVIRDREHFYRLVKWLNDNVGKGADKWTMDGRVLKAIKQGKTVNPNIHIYRTDFDTASALYLSLI*
Ga0167659_1003260	Ga0167659_10032603	F010995	VTTRLQHCVVIVYEHALLGEGIAKYLRAQIGVEATLASTSDPQAVRSALTLGPAVVIFESSDPFEKFGLTTLAPHAVLIDVSTVVSRGSVLTPSVAGLEQILQAVRDSGCAVTEPSGTTRSADISTAPAR*
Ga0167659_1003558	Ga0167659_10035585	F101135	MKDITIEQYCDGWAVQVDDKRVSWNHNDENMGTVGIKELLEYLGHNVTVEECY*
Ga0167659_1004403	Ga0167659_10044035	F074429	VGDARMSKKIPNFSIDKALGRIMRPSVFDRIVKEIDAKEIPAKYVEHILVQYYDGNVVELSGDELTHPIPMNKDASWAEMEESFKKMRDVKVFISTDKLEEDINAMVEDYLGRFC*
Ga0167659_1005438	Ga0167659_10054386	F078676	MVQKIHGSATAMQNLTADLAYYVCYAASPGAFTDPNPNPPTSQELTRLLNIQVTGQPLDESQKNFEVLLMSIGLRAMPVVLSDPQAVFQLQDYTLELAGEGYVWKFAVERGVQFYNFTPYGSPGPVGLLVDDLDGVILPSGVRVTTVTGSPTGWAKNIAFTRMESI*
Ga0167659_1008294	Ga0167659_10082943	F025733	MHAEMRQIAFSVIRIGALVALAMLLILGLLPAVLAVQAAST*
Ga0167659_1011472	Ga0167659_10114722	F038220	MNDVDRLVQQIHELQGSMLAMECFVNSLTEVLSEDARVVVQALYASESAAFRAALMASTAPEATVSAFERDVQRGLGVLGEPADPSAT*
Ga0167659_1014444	Ga0167659_10144441	F065250	MAPANTKTPTASPTEMPALAQMMREQLISTLQQGQQLSIDAAQTWVKAVSVLPAMDLPKLPGLPAMPAVETATLFAFDVAADLLNAQREYALQLTHALSPEKTS*
Ga0167659_1017102	Ga0167659_10171022	F051096	MTDHPTPTPSSATSRANEQDAVVQACVHIDAAAYQLEAAANGDVFSSLLGLAGLLALIRGGINPTLRAVVDPGDRLGPIAHVDRALFLLEGAHPSIAPADLLVWTQRLADLRDALPDALLAAWAGRP*
Ga0167659_1019999	Ga0167659_10199992	F031302	MVSSAPFGARTGEPRIQGDLRDVAHGVHQEFDEKLDSRAVDECLSRVAAEFTDAKVRSFVPLLVRRYVSDELQKRLEHA*
Ga0167659_1020958	Ga0167659_10209584	F081263	MTQVTRVRFAYPQAADRNLAVDRSFAVGVRGATRISMHTSATSNAPAAKDVSYLRSRRPPV*
Ga0167659_1024710	Ga0167659_10247102	F014679	METLDTLDSADWRNRCAQRIAEIDQDLSRVEAERLAKDVYAFERTRAMSPEAAAEFVAVEMSRPDRAPFERRATAR*
Ga0167659_1028171	Ga0167659_10281712	F017937	MKLIAKVIESMLTKDATQQWTGQTSAVQSRDVWGWGGFADQTPTIL*
Ga0167659_1029633	Ga0167659_10296333	F023252	MIALLFFLQTAATTLAAPIPTFIVVRDGGAIASVPVTIDGGQPSVRADALMRAMRGMLITSTNLHYTLALPRARIDLIDGIPFAKRDTLTIPLTRAPQVRGGQLYLPFQFVTDVIPRYAGGYVYDAALSELRTVTAVANRPATPIQSSTSSPVRAATTTPVAARKPVTQQ
Ga0167659_1033586	Ga0167659_10335863	F038578	MSDELVVLRGGSRDGESTTVDVGVRRILAASDAPGLLDVYEANGETEQLRGNDELAFVFVHAG
Ga0167659_1035868	Ga0167659_10358681	F057939	MQLPSTNLESIRRDIAERLRPTCANMSEDEFEKMVARMALIEWKHLNDATPTSQMLSR*
Ga0167659_1040943	Ga0167659_10409431	F003763	LTRPDGPTQELSTLLRKVAREAHDQDIKPEQLIIIFKQLWNSLAESLRPQSADQYELVRQRLVTLCIRAYYAE*
Ga0167659_1041100	Ga0167659_10411003	F103943	QYTADVCRTDNGGTTQAPDAVGAPTACRGTDAAPVSDAVHLYLTTNPLAGTGGGDTFMQPTSASSTNGLHLTAPLVIAGTAKSKFSVNATGKVGDDGVSCGMNPPVFGFQKLP*
Ga0167659_1042875	Ga0167659_10428752	F050030	MPKPPDDDPLAAFELPPDLMSSTFEHAISDHADLAHEQGHAVAAALQRLLAGSTVEYGFPGMVTACLKSGALAHCGGPSIGWMIDVQRKPGGSPVTVDVNVPSDETDPVRLAELLAKAL
Ga0167659_1050883	Ga0167659_10508831	F038916	MNHMHINPSDARDVLDVLGYHNHDGECECGDFKRNLITAIICAGPEDRARLALGFPSLVAAIRSQSSNPASIEYLEGIARSYERPSLQG*
Ga0167659_1051041	Ga0167659_10510411	F001677	MSRITIAASLLLAIPSSSYAQQAGTFTASTDTKPVTEEIFETKDAAALTVGLAPLSKSQLPNGDREVRIWYSSFGNPQYLVIIRQTGGTTSGRLLLRWDQYYEISPVLADTRVDAFVSSAYDCGQISKRDSKFGDDRWISSVCEANLKGTPDWKAFLSEVESHALPQATSGAPVQDQADQKTWGITVERKSGATYGVSHYQTAMTFGAPEPGRGLKL
Ga0167659_1055665	Ga0167659_10556651	F036309	YDTIIVKHVTVAAKKPVSKPVAKPVVQQEIVLPTPEFINQPYYFDKAGNKLIKLENANALMVTKKKTLGLKGAKQFLSMDATSSKIRFVAKKDIVFFIKTSGDVIDLTSYIKLYQFIPVDQKREVTITSKEGLITNKDEAKGRLLNFSVKMISKDNYQIQLPEQLEAGEYGFVWVKNMELKEFTVFAFGIDWKSSD*
Ga0167659_1060245	Ga0167659_10602452	F017706	MKKTIAVIAFLTVPALASAQAGLNRIQFLALQQELRDQGCGVTNVDGRYGPSTRRAIATCAKKFNTANNAAALLAAMNIGFGPNDTPPAAPTGGGSMSMGAGGMKSEAKAEGESMKTEHKEHVAAMKPHHKAMKKMKAAADTMKK*
Ga0167659_1060445	Ga0167659_10604451	F015992	NPQILTSFGMESASGSLSSSIHAAMTNPIPPVSEHYSPSLLPRDTFRTLIALAIIALTIGGWIYVMMIPVDRFALSSQTRLWWIEQIVSFVLALVCIGIVLRKRSFLTPAFWLTVYSLVFDVMRWIFEFKEGQLRLPIALILYALFIWRLQLARRTVAGERHAVAV*
Ga0167659_1066799	Ga0167659_10667991	F045483	MVVMTEARRQSIPTAKPRRLVSGLSVLGLSLFVLTGCAVPGGYDVNSLHLLPEAALVYPGSADVHTNDYGGSPGNYVSKGAVAATGKSATTVHTQLEVLAYFSKTLAADGWTQIAQDDTATTPEGFRAKDISWVKNSLHLSYLVRTWTVGETTQYFTLLSANE*
Ga0167659_1074828	Ga0167659_10748281	F042189	MPELYEVLLVDAGTRWHAGWLVDDETETDLLLTDAERKVLLFGSRAALEHHAQEHGLELHDDLPDEVDLDLGGWLSTGSPAPDLAEVSELWHLLYDDPVAGKALAGEELGEAYDDLVEELDDWFAEHGSTARAALRDAVRRLRGAFTPA*
Ga0167659_1075756	Ga0167659_10757562	F005003	TCRLDDADIDYVRNTAEWIARCVARTLEMNAGANADEVVPLVVDMSTRGRWRLMKPETVGEQLALPIPQPLG*
Ga0167659_1076149	Ga0167659_10761491	F040397	DPVTGALHGTLPANSKLAEVKFTEGPTIDRSLPVDMSKSPPIPIQHGNQTFNIQSERGVITMVETTPGAASKAAPRVVGAGLALAATAGGRYIVALAPRGRPDPNEPAVEPVVYTVTW*
Ga0167659_1079897	Ga0167659_10798971	F073995	LFKIARRVGIAFGSFVIAWLAVSLVAGWLFGSGNILVWVFAAVVGAGVYLDILRRDRRVG
Ga0167659_1085411	Ga0167659_10854111	F071209	EKQDLYVPMNELIVNKENHWTFTHINLPYCEIAKKQIVLWCVTNLQGRWTMLGGNKFGFESGEDATVFRMQFGF*
Ga0167659_1086399	Ga0167659_10863992	F009579	MSEVELAFAFLSGVVTGILLDRWLLPPLVDLWIDRLRRHGR*