3300012921: Contaminated culture microbial community from soil near Moab, Utah, USA - Microcoleus steenstrupii SON62 (Illumina Assembly)

Overview

Basic Information

• IMG/M Taxon OID: 3300012921
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0126277 | Gp0191825 | Ga0164290
• Sample Name: Contaminated culture microbial community from soil near Moab, Utah, USA - Microcoleus steenstrupii SON62 (Illumina Assembly)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 347988676
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Sediminibacterium → Sediminibacterium goheungense	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → Pirellula staleyi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Genome Sequencing Of Microcoleus Cyanobacteria Isolates From Utah, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Desert → Contaminated Culture → Genome Sequencing Of Microcoleus Cyanobacteria Isolates From Utah, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → desert → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Moab, Utah
• Coordinates
  • Lat. (^o): 38.5733
  • Long. (^o): -109.5498
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020734	Metagenome / Metatranscriptome	222	Y
F021521	Metagenome / Metatranscriptome	218	Y
F022012	Metagenome	216	Y
F031609	Metagenome / Metatranscriptome	182	Y
F038305	Metagenome	166	Y
F063207	Metagenome	130	N
F072990	Metagenome	120	Y
F081097	Metagenome	114	Y
F085354	Metagenome	111	Y
F098846	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0164290_1000038	All Organisms → cellular organisms → Bacteria	492251
Ga0164290_1000087	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	335511
Ga0164290_1000172	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Sediminibacterium → Sediminibacterium goheungense	241278
Ga0164290_1000184	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → Pirellula staleyi	236350
Ga0164290_1000251	All Organisms → cellular organisms → Bacteria	203043
Ga0164290_1000401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	145808
Ga0164290_1000753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	83300
Ga0164290_1001296	All Organisms → cellular organisms → Bacteria	40819
Ga0164290_1002317	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Sediminibacterium → Sediminibacterium goheungense	14296
Ga0164290_1017395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1634

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0164290_1000038	Ga0164290_1000038131	F081097	MVKHTVLAFMLVAAVSVPASAELRRVEIKTLGMD*
Ga0164290_1000087	Ga0164290_1000087142	F072990	MEITMATESLAEAVRALTPQEQEAVRRFIDYLKRRDISVSSQSPFLLAAEEFMAQHPELLQRLAQ*
Ga0164290_1000172	Ga0164290_1000172110	F021521	VIPSRAKGEKMAGYSHRTAQPPILAAFLPWGGSAGAGRVRPAAAKVRVDTYFP*
Ga0164290_1000184	Ga0164290_100018430	F085354	MAKKLAEPKPAAPAPPKPEERFVELMLVAADFVQSCGGLEPAKKALADAGKFVESAGGVGNATRALEVLENLKEKIGS*
Ga0164290_1000251	Ga0164290_100025137	F022012	MEQAIPFRGARAARHGRQSNMKKLLILACALVIATSAFAAQGKPIKAKYSGVVEQYNAETKTLTVKRKDNKQGEFVLTETTELLDGNAKAEIAALSVGRKVDVEFVMDGAKKVLVKAKVSGAATTK*
Ga0164290_1000401	Ga0164290_100040116	F020734	MTEVLLASGVALDLVGAAVLAHAHNAESIVELREEAGEEGAALGQPDAFSTHAQLLAEKRIGFLLLTVGLTLYLCGLVLKSPEDLTLMASIALGVVAAGVAISVVFTQAASQRILEQARRAESKQDPEELPEQ*
Ga0164290_1000753	Ga0164290_100075329	F104510	LTLHTDAQKLNWSMIGVIVALCIQAAALVFGLGGLTQRVTNLEKIVAPLSDGTLARLDERTKAMKDQLDRIEREGA*
Ga0164290_1001296	Ga0164290_100129632	F103798	MSPATPPSRRRRTRLPDALPLRIAPEIAAGDETRDRRGAEEQLALCEPDHLRRLEQPLRYGFADRSSARKGLEVAAGVAIADRLGSIRQTAGPPIGRHGYMAIVWLGSRWLQLESAAASAVPFTQYRLLHDFGWQDSGRNARHALKRTLLNLQEARWEGEVNDPLTGRKTHEDHFGIIDRVLWPVVEDGRVERLGYIFLGSWFLEQLRNEAGAYLDWAIVRDLPPIARKLYGLLENDRFEAGDEGEEWQAYWLGPPLFASVGSTCSRERDNVAAVWRACEAITAQDPRYRFARERVVVEGRVSQQVVVTRTPRAQVRRLPRVAAVVPPGGAPGAPAVGRAS*
Ga0164290_1002317	Ga0164290_10023178	F021521	MAGYSHRTAQPPILAAFLPWGGSAGAGRVRPAGAKVRVGSYFP*
Ga0164290_1017395	Ga0164290_10173952	F063207	MTNPQNHGASGSKTRPDVFDDENIPVSQRLGNFSDSVFGFVFNPNTIKFGILVFAGVCAAINLSGYYDVGTQLMSIKLDEYGREIPVNAPVGERIISSLVRIPLIGQLILWLDKLTGDLAALVIAIGAWFFIQGLEIASRFYLYFPEAAENLLFKLNRKRYEAPANNPGAKKAYKLATGSTNLILRWLAIIGFVAYIVDAYTMHLSRAWTDHLGNPLWLNVLWNSLAVVGVELSMLLYRGYKAVTLSAAEKAERDTSR*
Ga0164290_1020296	Ga0164290_10202962	F038305	MAGWGDDPTLAELRALVYEEGWTPVEVAEATSGDRVVVAGPDGERRTFSSDHIAFHRFVEGLHEDFDIPPTAASDPGGPSGDE*
Ga0164290_1023286	Ga0164290_10232861	F031609	ESNVLAAPKCREGLEPRNRQKPGGNGGSALELASLAPYVEKHLADEVFRDLFIPYEPKPETEHPDMVPSVKHLHGEPVALSDPSDQNFV*
Ga0164290_1046654	Ga0164290_10466541	F098846	MEPGTERYGVSDIVYDIIQTVGNLLQGQEKLQEYAVDADRAGDQEAAAAFRTIAEANRAGAQVLLGRLRVHLNEHQDYKD*