3300012284: Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S2

Overview

Basic Information

• IMG/M Taxon OID: 3300012284
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118446 | Gp0134502 | Ga0116696
• Sample Name: Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S2
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Institute of Technology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 276351076
• Sequencing Scaffolds: 41
• Novel Protein Genes: 43
• Associated Families: 39

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Olavius algarvensis Gamma 3 endosymbiont	1
Not Available	23
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → unclassified Woeseiaceae → Woeseiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Beach Sand Microbial Communities From Municipal Pensacola Beach, Florida
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Sand → Unclassified → Beach Sand → Beach Sand Microbial Communities From Municipal Pensacola Beach, Florida

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → beach → beach sand
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Municipal Pensacola Beach, FL
• Coordinates
  • Lat. (^o): 30.3262
  • Long. (^o): -87.1745
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F003835	Metagenome / Metatranscriptome	466	Y
F005132	Metagenome / Metatranscriptome	411	Y
F006866	Metagenome / Metatranscriptome	363	N
F009753	Metagenome / Metatranscriptome	313	Y
F010834	Metagenome / Metatranscriptome	298	Y
F011939	Metagenome / Metatranscriptome	285	Y
F013152	Metagenome	274	Y
F020174	Metagenome	225	Y
F022199	Metagenome / Metatranscriptome	215	Y
F023598	Metagenome / Metatranscriptome	209	N
F023856	Metagenome / Metatranscriptome	208	Y
F024115	Metagenome / Metatranscriptome	207	Y
F025141	Metagenome / Metatranscriptome	203	Y
F028441	Metagenome / Metatranscriptome	191	Y
F029762	Metagenome / Metatranscriptome	187	Y
F039095	Metagenome	164	N
F039118	Metagenome	164	Y
F041203	Metagenome	160	Y
F041204	Metagenome / Metatranscriptome	160	Y
F043607	Metagenome / Metatranscriptome	156	Y
F050381	Metagenome / Metatranscriptome	145	Y
F051932	Metagenome	143	Y
F053227	Metagenome	141	N
F058634	Metagenome / Metatranscriptome	134	Y
F060924	Metagenome / Metatranscriptome	132	Y
F068235	Metagenome	125	Y
F070128	Metagenome / Metatranscriptome	123	Y
F070744	Metagenome / Metatranscriptome	122	Y
F077948	Metagenome / Metatranscriptome	117	Y
F082711	Metagenome / Metatranscriptome	113	N
F092085	Metagenome / Metatranscriptome	107	N
F092086	Metagenome	107	Y
F093526	Metagenome	106	Y
F095737	Metagenome / Metatranscriptome	105	Y
F099325	Metagenome / Metatranscriptome	103	Y
F103273	Metagenome / Metatranscriptome	101	Y
F105102	Metagenome	100	Y
F105194	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116696_1000288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Olavius algarvensis Gamma 3 endosymbiont	4596
Ga0116696_1000931	Not Available	3283
Ga0116696_1008468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae	1435
Ga0116696_1010225	All Organisms → Viruses → Predicted Viral	1330
Ga0116696_1014305	Not Available	1161
Ga0116696_1018107	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1054
Ga0116696_1018172	Not Available	1053
Ga0116696_1021052	Not Available	995
Ga0116696_1026419	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	910
Ga0116696_1027268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → unclassified Woeseiaceae → Woeseiaceae bacterium	899
Ga0116696_1027592	Not Available	895
Ga0116696_1028476	Not Available	884
Ga0116696_1029744	Not Available	869
Ga0116696_1030921	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	857
Ga0116696_1031129	All Organisms → cellular organisms → Bacteria	854
Ga0116696_1032089	Not Available	845
Ga0116696_1036579	Not Available	806
Ga0116696_1037635	Not Available	797
Ga0116696_1038931	Not Available	787
Ga0116696_1040506	Not Available	777
Ga0116696_1046211	Not Available	742
Ga0116696_1047573	Not Available	734
Ga0116696_1050623	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	719
Ga0116696_1053314	Not Available	706
Ga0116696_1058416	Not Available	684
Ga0116696_1068183	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	650
Ga0116696_1073927	Not Available	633
Ga0116696_1074700	Not Available	631
Ga0116696_1074753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631
Ga0116696_1076706	Not Available	626
Ga0116696_1089851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	595
Ga0116696_1093004	Not Available	588
Ga0116696_1100424	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	573
Ga0116696_1100477	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	573
Ga0116696_1103648	Not Available	567
Ga0116696_1106796	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	562
Ga0116696_1131979	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	523
Ga0116696_1133766	Not Available	521
Ga0116696_1136047	Not Available	518
Ga0116696_1139786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica	513
Ga0116696_1148288	All Organisms → Viruses	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116696_1000288	Ga0116696_10002882	F070744	LSIGECNNARLRKQLGAIMSKRLIPSKRGWLRRYLQDQLKVIVPSNTDDDELQQICDEIPAKDWVQVKNAWRQHRHNDTPRYMRYVHATNEENKRLGLFWQRLVAQDFITKEDALLLAENFFQGLGGYSDEMAKAMVRKILRGTADRYRNKTTTTPRNLKTDEVVQDT*
Ga0116696_1000931	Ga0116696_10009314	F043607	MEERYIKFYKTFHKKFKNNENLILCSKTLSDCRVDTGVRLK*
Ga0116696_1008468	Ga0116696_10084683	F092086	MSKYLLLLLSVIALSACSKPEDVLENINDVSVPDQLTGCVARSEDGSCEKAVCVADDESDCESWVKACEKHDHIVGVRDGHDTCERRAASPDS*
Ga0116696_1010225	Ga0116696_10102253	F009753	MESEALMLYAIYFALHFAMVFLGVVIAIHFDMTIGLLIATTFGVKFLFMLPNNREGY*
Ga0116696_1014305	Ga0116696_10143051	F011939	MPEITIDLIEETLRKEVQKLDKNVRVVAVEPGRKKNFYRVTLLKDGKSGSADLEKEVINQFLSHEGKGKELRKALGKAVSHLSIRYGR*
Ga0116696_1018107	Ga0116696_10181073	F041204	MPNPLLEPTRKGRYALPMAVIVNWNGVDVPEELKTLKKGRYVLVPIDEPPELTEEQEAGLEAAMASIREGHGLSRDEAFTKLKASLE*
Ga0116696_1018172	Ga0116696_10181723	F003835	MIDIKTRNKIAQIFVDLNVGDTKPVRNQEMVPLLKEVNNTALIGHAIRFVTTPDGVVTHLKKYRKTAIEKRFENEGLQ*
Ga0116696_1021052	Ga0116696_10210522	F023598	MAQISSYPILDPQFGDKVLGSNTVDSAGNPVEGNPTVQYTLSSVKTLVDQNFIQQLETENTSSVALLQSGDALIFGGVDVTGNNVTYTANTGKVTFVTKGTYYIEQQYCVSGTPPGQIFPVFKTMANGSDQVGPTIIERYSPGASTDRKIISISNIVNVLGGTYYIFHGLWDSQGAQPTLQPQLINNNWATA
Ga0116696_1026419	Ga0116696_10264192	F070128	MSKTLAFRKVAMWIAVIMLLVGGFGSLSAGALDATVIMALSLASALVLLDLAGRPEPRSARAIVGFALLATAVGAAFVMVYEILFG*
Ga0116696_1027268	Ga0116696_10272682	F092086	MYNAAARLEETTMHKYLLSLLTVVALSACSGPEDVLENIGDVSVPDQLTGCVARADDGSCTKAVCVADEESDCKDFVKACEKHEHIVDARDGHDTCERQTASPES*
Ga0116696_1027592	Ga0116696_10275922	F060924	MAIGIGIGLSIPRDITGDAGVPTPFFEILGEKGEFLIAESGTTPTYLITEQQ*
Ga0116696_1028476	Ga0116696_10284761	F041203	MKIKYNDLTHYFIRDHQELPVGYLDHCKKFFDSLKGQASSSKLQAPSIKKQLHKPGRRVKNR
Ga0116696_1029744	Ga0116696_10297442	F093526	MIYGPIFTRGVDDFLFEQIVDPILPGQGLPIPLPVRLGLYAIQLQYEAGDAIASGQVAGKSQYTGQAAQAERAKSLGMNLIYQPGGIQV*
Ga0116696_1030921	Ga0116696_10309212	F082711	MDSAEALRVIRRLARANRIRLTAMKTTVLERKLDGRMFRGRVPCSFSKKRPELGPLIHIDDLGVFEGKIAQRIFAEKLRGPQSFRLCRSFCAMSMQAVADLLQVDRRTVQRWESEESPVPPWAMLLVSKMADERSKGRAVMRTWLQELADEEGRPTEIDLDVA*
Ga0116696_1031129	Ga0116696_10311293	F077948	MKDFAHKLHKPQQPKPWTDVAREMTENLIFVIATVLSLVIIIKGVM*
Ga0116696_1032089	Ga0116696_10320892	F013152	MVNTNKKGKMRKMTTQELSTLMIDKITFITTDKQGKETTWTTSPEVDHSSLCDGWDVEDFEQEE*
Ga0116696_1036579	Ga0116696_10365793	F051932	MFDITEQDCETITKLRWLQVKELSIKYSNDQEFGAKVRKLINK*
Ga0116696_1037635	Ga0116696_10376351	F005132	MVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQYTSIQDLLGTCLYEDLEAKVLAQTLDATEQGLFKLVKYTLAMYSAKAAISILRTETARTKNEEGKQDQYILDTISSTVDSKLSYINKRITNFILDNAAIKAIATADGCDNDLFNEEDTYQGSVF
Ga0116696_1037635	Ga0116696_10376352	F029762	LDIANLDKTVDVLSRLNDAKILTAHNVTSPTLFGVMVSGKLGGTGNELVTAYQIFRATETLPNREILLDSVNRVFATVGYDAMNLSVVEEDINLESIKGANTTDISNG*
Ga0116696_1038931	Ga0116696_10389313	F023856	MRCRACDRILEESELTRKDTHGDFLDLCGICLSATASSGVDTETMQYYQYEIFTDDEKYDTLY*
Ga0116696_1040506	Ga0116696_10405061	F070744	VTVPSNTDDDQLQQICNEIPASDWVRVKNAWRQHQHNDTPRYMRYIHATNEENKRLGLFWQRLVAQDFITEEDALLLAENFFQGLGGYSDEKAKDMIRKILSRAADRFRTKAATSPGNLKTDEI
Ga0116696_1046211	Ga0116696_10462111	F053227	MTEFNLNKYQTCLELYNEPSIEDEENYEPFLFYIKNRNFALPDWCDNLENIIKSEI*
Ga0116696_1047573	Ga0116696_10475732	F020174	MEQLREDVQKFYGWAQKEFEGEEIDRLLFEVQSSITNLERYINNEFKRKAMGKAHMR*
Ga0116696_1050623	Ga0116696_10506232	F039095	MEEDYKWVKGGSKSIALLWLRQKNSDLMQIANALKPQDPTNDYEMDIFLDLISIYGAITSAIDMVEDVQNMVWAAEAKNSDLKLTIRQLTKKIKAYEDKFDNLNEHLK*
Ga0116696_1053314	Ga0116696_10533141	F095737	MAVGFSNTNKPLNPRGNDASPKGYNRAELYTGKALDFDGVN
Ga0116696_1058416	Ga0116696_10584164	F092085	MKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAYMDLFNEMTIK
Ga0116696_1068183	Ga0116696_10681832	F028441	NMTLKQLIKLEDKANEVWVVSPTLHYDTENKDFSELVSVNLGEKTKYRYIVPSTPTVHKHLKAYKKMYNMTDGEMIKNFCILPSSEFTPFIQEIAIYNASTDCVACAGSSTEDTNDVIKFAQDHAKEMALAFKRIWRKYKLCNP*
Ga0116696_1073927	Ga0116696_10739272	F039118	MTETETVIEESKSATRTQRFAEWLMARDERRAEKETSLEGLMKFNIFLSTITLVSVAGATELDYAMIAWLWV*
Ga0116696_1074700	Ga0116696_10747002	F025141	MIQCEYCQRGFVESSNGLTEKIFHELLHEPEVVNH*
Ga0116696_1074753	Ga0116696_10747532	F105102	LLLLVMEADGQITSHVLSAHDTMAECHVAGTYINWEERMPVNKDMLCFATDMKFEVME*
Ga0116696_1076706	Ga0116696_10767062	F099325	MWERLRDALRRLWRRSQRGHDERRAAEARARFWAEVRRGQREAEANSGN*
Ga0116696_1089851	Ga0116696_10898511	F058634	DSAVSVASWPAHRGEPPGIGSGDMEVTLATPPAGPNAQIDTVNVSFWCEGVDPVLGVPRPPQSNPETFTINTSTSQGPEPYNTIGLFEKQGIPAGECHFFYTATSNTGNTECTGEASPITVVTDQTTSFEVVLACIHTPRYGGVRSDGSFNQCAEYRQILVSPTTQAIGNLVDIATEVYDPDGDPVTVAGQTAGECG
Ga0116696_1093004	Ga0116696_10930042	F099325	MWKRLHHALRRLWNLSQRGRAEGRMANDRARFWAEVRRGQREAEAN
Ga0116696_1100424	Ga0116696_11004242	F010834	MNELTLHLKLPKTVSLNTLYAGKHWTFRKKKKDEYKKIVEKELANYDHYSAEGMSVRIRYNARTDVDNNVLVSKFVADTLVANGWIPDDSPKHYNKLTIIFDPEVEKNYCEVEVRLRG*
Ga0116696_1100477	Ga0116696_11004771	F024115	KVLWFVAAVGVAGGVNQWRRTAATQGLEAAQEGDRRAAERWVDRALRESKCELHEARAYLSDDATRKYVRRPDYVEAFVDKLYSGGAPALEICESDALGFRFAHYLLIMLPEDSRRHEQLVADAQSLVRRDAVVYRGVTSAEVEQIVRTSTLVGTRRVLVDLPVEAD*
Ga0116696_1103648	Ga0116696_11036482	F000352	MQNNMRTLKLTENDCTFVHYVLRMYATQTPGLDSEDKEEIYEVANKFK*
Ga0116696_1106796	Ga0116696_11067961	F058634	VLTCAAFAVTLAGCASDQTQGSEGIGSVDMTVTLATPPAGPNEQIDAVDVEFWCEGIDPVLGVPRPPQSNPERFTINTSTSQGPEPYNTIGLFEKQGIPAGPCHFSYYAVSNTGNTECTGEASPVVVATNQTTSFEVVLACFHTPRYGGVRSDGTFNQCAEYRQVLVSPTTQAIGNLVDVATEVYD
Ga0116696_1113760	Ga0116696_11137601	F105194	MAYEITNRAKFKDDNGIYYELHILKKDYTGSISEFNVGGDGFKLSWRGRGERIDLPIHSSEITFDFVMQSDSDRNRILNIMAEEEGNYIARIYKNDNGTENDFAAITPVGKFWTGVIIMNESIMEDIDYPQIIRLRAIDGLELLKGKTFNEITNIY
Ga0116696_1131979	Ga0116696_11319792	F006866	MSDNGKSANVLINRNNLNNIFELLVQIHLRGQLSRDEQAFIKNFIELPEAPTRENRQARRANTQAIKKLFREEAKKR
Ga0116696_1133766	Ga0116696_11337661	F103273	DAIRAVVRQTIVDLEELAPGQVLGREPSRSELEGETGSLRAALDACCDELREGCGLPTSPEHSVRAQSMRAADADWSQGFSQALEAYRSAACKGLGTSLAALALPPESVSKPVPAG*
Ga0116696_1136047	Ga0116696_11360471	F050381	MKKLILILAIVLLPAIALANFSIKFDNTTNKKMFYLLYWIDHTYDWPHPFNLAGGELKASEKVDLNVSLTNGHYYVVWHDDGDWKNEVMMDVKDNIKSVTVTPIKSSMQK*
Ga0116696_1139786	Ga0116696_11397861	F068235	PKEVNEKYITDLVRALEIFLRQMQNPQLNFQEVPTDGNNNLLQQGDIYIADGGFLKVVGKTEIFSGAFSATGSVGTVTVSTS*
Ga0116696_1148288	Ga0116696_11482881	F022199	MATKKTAMFTLTERITISAADTETSATIDLGSYVDVGDRQAIQVHSVDYIFQGTSATESIATAINTSAMVIVQVTDLNRGGLV