NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095737

Metagenome / Metatranscriptome Family F095737

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095737
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 44 residues
Representative Sequence MAVTTTQTNKPFNPRGNDQSPKGYNRAALYSGKALDFDGVND
Number of Associated Samples 84
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 24.75 %
% of genes near scaffold ends (potentially truncated) 96.19 %
% of genes from short scaffolds (< 2000 bps) 84.76 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (53.333 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(42.857 % of family members)
Environment Ontology (ENVO) Unclassified
(66.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(78.095 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 5.71%    β-sheet: 0.00%    Coil/Unstructured: 94.29%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF13385Laminin_G_3 33.33
PF07453NUMOD1 4.76
PF13573SprB 3.81
PF07460NUMOD3 0.95
PF02018CBM_4_9 0.95



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A53.33 %
All OrganismsrootAll Organisms46.67 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10127098All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium910Open in IMG/M
3300000117|DelMOWin2010_c10112892All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium967Open in IMG/M
3300000117|DelMOWin2010_c10123757All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium898Open in IMG/M
3300000883|EsDRAFT_10060724All Organisms → Viruses → Predicted Viral1267Open in IMG/M
3300000947|BBAY92_10114977Not Available713Open in IMG/M
3300001351|JGI20153J14318_10115450Not Available708Open in IMG/M
3300001827|ACM21_1040955All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon558Open in IMG/M
3300005828|Ga0074475_10585980All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon987Open in IMG/M
3300006027|Ga0075462_10114745Not Available833Open in IMG/M
3300006027|Ga0075462_10268817All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon503Open in IMG/M
3300006193|Ga0075445_10108648All Organisms → Viruses → Predicted Viral1026Open in IMG/M
3300006400|Ga0075503_1676517All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon602Open in IMG/M
3300006793|Ga0098055_1024024All Organisms → Viruses → Predicted Viral2578Open in IMG/M
3300006802|Ga0070749_10620703Not Available582Open in IMG/M
3300006810|Ga0070754_10185908Not Available975Open in IMG/M
3300006810|Ga0070754_10395409Not Available605Open in IMG/M
3300006916|Ga0070750_10201049All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium882Open in IMG/M
3300006916|Ga0070750_10393106Not Available580Open in IMG/M
3300006919|Ga0070746_10222400All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes891Open in IMG/M
3300007234|Ga0075460_10077137Not Available1219Open in IMG/M
3300007234|Ga0075460_10082444All Organisms → Viruses → Predicted Viral1171Open in IMG/M
3300007345|Ga0070752_1054136All Organisms → Viruses → Predicted Viral1828Open in IMG/M
3300007540|Ga0099847_1119406Not Available795Open in IMG/M
3300007542|Ga0099846_1209233Not Available686Open in IMG/M
3300007542|Ga0099846_1337602Not Available512Open in IMG/M
3300007640|Ga0070751_1256256Not Available663Open in IMG/M
3300007973|Ga0105746_1088808All Organisms → Viruses → Predicted Viral1006Open in IMG/M
3300008012|Ga0075480_10144724Not Available1295Open in IMG/M
3300009436|Ga0115008_10170887All Organisms → Viruses → Predicted Viral1571Open in IMG/M
3300009495|Ga0115571_1071621All Organisms → Viruses → Predicted Viral1551Open in IMG/M
3300010300|Ga0129351_1101763Not Available1153Open in IMG/M
3300010368|Ga0129324_10072098All Organisms → Viruses → Predicted Viral1533Open in IMG/M
3300010368|Ga0129324_10206446All Organisms → cellular organisms → Bacteria796Open in IMG/M
3300010368|Ga0129324_10224594All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium755Open in IMG/M
3300010430|Ga0118733_108288393Not Available537Open in IMG/M
3300011118|Ga0114922_10971220Not Available690Open in IMG/M
3300012284|Ga0116696_1053314Not Available706Open in IMG/M
3300012969|Ga0129332_1445445Not Available667Open in IMG/M
3300013010|Ga0129327_10373589All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium751Open in IMG/M
3300013010|Ga0129327_10933322Not Available500Open in IMG/M
3300017697|Ga0180120_10289918Not Available657Open in IMG/M
3300017731|Ga0181416_1129736Not Available606Open in IMG/M
3300017749|Ga0181392_1148461Not Available686Open in IMG/M
3300017753|Ga0181407_1097980Not Available739Open in IMG/M
3300017770|Ga0187217_1217520Not Available629Open in IMG/M
3300017951|Ga0181577_10098177All Organisms → Viruses → Predicted Viral2031Open in IMG/M
3300017967|Ga0181590_10335747All Organisms → Viruses → Predicted Viral1089Open in IMG/M
3300020165|Ga0206125_10044664All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2215Open in IMG/M
3300020176|Ga0181556_1055673All Organisms → Viruses → Predicted Viral2028Open in IMG/M
3300020182|Ga0206129_10336387Not Available592Open in IMG/M
3300021337|Ga0210341_1129749All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon664Open in IMG/M
3300021959|Ga0222716_10533516Not Available653Open in IMG/M
3300022068|Ga0212021_1013743Not Available1428Open in IMG/M
3300022072|Ga0196889_1041572Not Available908Open in IMG/M
3300022169|Ga0196903_1018115All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium853Open in IMG/M
3300022176|Ga0212031_1018375All Organisms → Viruses → Predicted Viral1070Open in IMG/M
3300022198|Ga0196905_1156866Not Available583Open in IMG/M
3300022200|Ga0196901_1075847Not Available1207Open in IMG/M
3300022200|Ga0196901_1241475All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon564Open in IMG/M
3300022384|Ga0210321_1063182All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon547Open in IMG/M
3300022922|Ga0255779_1185082Not Available920Open in IMG/M
3300022929|Ga0255752_10225393Not Available853Open in IMG/M
(restricted) 3300024255|Ga0233438_10030914All Organisms → Viruses → Predicted Viral3003Open in IMG/M
3300024262|Ga0210003_1130356All Organisms → Viruses → Predicted Viral1102Open in IMG/M
3300024262|Ga0210003_1187061Not Available859Open in IMG/M
(restricted) 3300024518|Ga0255048_10091527All Organisms → Viruses → Predicted Viral1508Open in IMG/M
3300025098|Ga0208434_1104441Not Available550Open in IMG/M
3300025610|Ga0208149_1031603All Organisms → Viruses → Predicted Viral1447Open in IMG/M
3300025620|Ga0209405_1027080All Organisms → Viruses → Predicted Viral2277Open in IMG/M
3300025645|Ga0208643_1020129All Organisms → Viruses → Predicted Viral2349Open in IMG/M
3300025645|Ga0208643_1060795All Organisms → Viruses → Predicted Viral1128Open in IMG/M
3300025652|Ga0208134_1165998Not Available542Open in IMG/M
3300025695|Ga0209653_1033556All Organisms → Viruses → Predicted Viral2153Open in IMG/M
3300025759|Ga0208899_1025194All Organisms → Viruses → Predicted Viral2888Open in IMG/M
3300025769|Ga0208767_1148998All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium855Open in IMG/M
3300025771|Ga0208427_1097556Not Available1019Open in IMG/M
3300025806|Ga0208545_1080138Not Available893Open in IMG/M
3300025818|Ga0208542_1198798Not Available519Open in IMG/M
3300025840|Ga0208917_1049462Not Available1668Open in IMG/M
3300025840|Ga0208917_1174370Not Available732Open in IMG/M
3300025853|Ga0208645_1056239Not Available1843Open in IMG/M
3300025870|Ga0209666_1166811Not Available981Open in IMG/M
3300025887|Ga0208544_10164343Not Available942Open in IMG/M
3300026511|Ga0233395_1148176Not Available556Open in IMG/M
3300027917|Ga0209536_102782904All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon570Open in IMG/M
3300028008|Ga0228674_1031506All Organisms → Viruses → Predicted Viral2127Open in IMG/M
3300028233|Ga0256417_1124243Not Available694Open in IMG/M
3300031539|Ga0307380_10803451Not Available777Open in IMG/M
3300031565|Ga0307379_10913831All Organisms → cellular organisms → Bacteria758Open in IMG/M
3300031565|Ga0307379_11508728Not Available535Open in IMG/M
3300031566|Ga0307378_10703540Not Available867Open in IMG/M
3300031578|Ga0307376_10805050All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon580Open in IMG/M
3300031578|Ga0307376_10965092Not Available516Open in IMG/M
3300031673|Ga0307377_10186071All Organisms → Viruses → Predicted Viral1624Open in IMG/M
3300031673|Ga0307377_10362666Not Available1084Open in IMG/M
3300031673|Ga0307377_10945446All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon583Open in IMG/M
3300032254|Ga0316208_1067108Not Available995Open in IMG/M
3300032277|Ga0316202_10314583All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium729Open in IMG/M
3300034374|Ga0348335_036708All Organisms → Viruses → Predicted Viral2066Open in IMG/M
3300034375|Ga0348336_047089Not Available1816Open in IMG/M
3300034418|Ga0348337_035809All Organisms → Viruses → Predicted Viral2199Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous42.86%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil8.57%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient6.67%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh4.76%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.81%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine2.86%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface2.86%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater2.86%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine2.86%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.90%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.90%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.90%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.90%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.90%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.90%
Marine PlanktonEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton0.95%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment0.95%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment0.95%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.95%
Freshwater And MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Freshwater And Marine0.95%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.95%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.95%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.95%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.95%
Beach SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Beach Sand0.95%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000883Estuary microbial communities from the Columbia River - 5 PSUEnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300001351Pelagic Microbial community sample from North Sea - COGITO 998_met_03EnvironmentalOpen in IMG/M
3300001827Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM21, ROCA_DNA110_2.0um_23kEnvironmentalOpen in IMG/M
3300005828Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.182_BBIEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006193Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNAEnvironmentalOpen in IMG/M
3300006400Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007640Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28EnvironmentalOpen in IMG/M
3300007973Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2umEnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300012284Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S2EnvironmentalOpen in IMG/M
3300012969Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017731Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020176Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300021337Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.425 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022176Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022384Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.184 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022922Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaGEnvironmentalOpen in IMG/M
3300022929Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaGEnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025620Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025695Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025771Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025806Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025818Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025840Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025870Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025887Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026511Seawater microbial communities from Monterey Bay, California, United States - 27DEnvironmentalOpen in IMG/M
3300027917Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)EnvironmentalOpen in IMG/M
3300028008Seawater microbial communities from Monterey Bay, California, United States - 1D_rEnvironmentalOpen in IMG/M
3300028233Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - MB_1026D (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031566Soil microbial communities from Risofladan, Vaasa, Finland - UN-1EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031673Soil microbial communities from Risofladan, Vaasa, Finland - TR-3EnvironmentalOpen in IMG/M
3300032254Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month chalcopyriteEnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1012709813300000116MarineMAVTTINTNKPINPRGEDKSPNGYNRAALYSGKALDFDGVNDVVNVTTNDL
DelMOWin2010_1011289233300000117MarineMAVTTTQTNKPFNPRGNDQSPKGYNRAALYSGKALDFDGVNDHITISNSDSINIT
DelMOWin2010_1012375713300000117MarineMSVTTTKTNKPILPRGNDASPLGYNRAALYSGKALDFDGVNDHITISNSDSINITG
EsDRAFT_1006072413300000883Freshwater And MarineMATTTTRTNKPLNPRAQDLSPKGYNRASLYSGKALDFDGVNDGVGLGAISGTLS
BBAY92_1011497733300000947Macroalgal SurfaceMGVTTTFTNKPINPRSNDASPLGYNRAALYSGKALDFDGV
JGI20153J14318_1011545023300001351Pelagic MarineMAVQTTLVNKPLNPRGNDQSPLAYNRAKLFSGKALD
ACM21_104095523300001827Marine PlanktonMSVSVSTTNKPINPRANDLAPKGYNRASLYSGKALDFDGVNDYVE
Ga0074475_1058598013300005828Sediment (Intertidal)MSVTISTTNKPLNPRAQDLSPKGYNRASLYSGKALDFDGV
Ga0075462_1011474523300006027AqueousMAVTVSTTNKPLIPRAKDYSPSPIGYNRGALYSGKALDFDGVNDEVTTG
Ga0075462_1026881723300006027AqueousMSVSVSTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVND
Ga0075445_1010864813300006193MarineMGVTTTNNKPFNPRGNDQSPLAYNKAAIYSGKALDFD
Ga0075503_167651713300006400AqueousMSVSVSTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVNDEVT
Ga0098055_102402413300006793MarineMGVTTDKINKPFNPRGNDQSPKGYNRAALYSGKALDFDGVNDQINITTND
Ga0070749_1062070313300006802AqueousMSVSVSTTNKPLNPRAQDLSPKGYNRAALYSGKALDF
Ga0070754_1018590823300006810AqueousMAVTTTQTNKPFNPRGNDQSPKGYNRAALYSGKALDFDGVND
Ga0070754_1039540913300006810AqueousMGVTTTKTNKPLNPRGNDQSPKGYNRAALYSGKALDFDGVND
Ga0070750_1020104933300006916AqueousMGVTTTKTNKPINPRGNDSSPLKYNRAALYSGKALDFDGVND
Ga0070750_1039310623300006916AqueousMAVTVSTTNKPLIPRAKDYSPSPIGYNRAALYSGKALDFDG
Ga0070746_1022240013300006919AqueousMAVTTTQTNKPFNPRGNDQSPKGYNRAALYSGKALDF
Ga0075460_1007713713300007234AqueousMAVTVSTTNKPLIPRAKDYSPSPIGYNRGALYSGKALDFDGVNDYVNLDGF
Ga0075460_1008244413300007234AqueousMAVTTTQTNKPFNPRGNDQSPKGYNRAALYSGKALDFDGVNDEVDLGT
Ga0070752_105413633300007345AqueousMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKALDFDG
Ga0099847_111940633300007540AqueousMAVNTNFINKPFNPRGNDQSPKGYNRAALYSGKALDFDGVNDDINVTPAPIGAE
Ga0099846_120923313300007542AqueousMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKALSFDGVN
Ga0099846_126842113300007542AqueousMAASTDKTNKPLIPRGVDDRPVDKYNRAELYSGKALDFDGVNDQITLGTISDLTFGT
Ga0099846_133760223300007542AqueousMATTTTTTNKPLIPRAKDYSPSPIGYNRGALYSGKALDFDGVNDYA
Ga0070751_125625633300007640AqueousMAVNTNFINKPLNPRGNDQSPKGYNRAALYSGKALDFDGVNDSISEQT
Ga0105746_108880813300007973Estuary WaterMSVTISTTNKPLNPRAQDLSPKGYNRASLYSGKALDFDGVNDSVGL
Ga0075480_1014472433300008012AqueousMGVTTTQTNKPFNPRGNDQSPKGFNRSKLYSGKALSFDGVNDN
Ga0115008_1017088713300009436MarineMGVTTTQTNKPFNPRGNDQSPLAFNRAKLFSGKALSFDGVND
Ga0115571_107162133300009495Pelagic MarineMATSTTRTNKPILPRGNDQSPLAYNRAKLFSGKALDFDGV
Ga0129351_110176313300010300Freshwater To Marine Saline GradientMAVTTINTNKPINPRGDDKSPLAFNRAKIYSGKALDFDGV
Ga0129324_1007209833300010368Freshwater To Marine Saline GradientMSVSVSTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVNDDINVT
Ga0129324_1020644623300010368Freshwater To Marine Saline GradientMATTTTTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVNDDINVT
Ga0129324_1022459423300010368Freshwater To Marine Saline GradientMGVTTTKTNKPINPRGNDSSPLKYNRAALYSGKAL
Ga0118733_10828839323300010430Marine SedimentMAVTTTQTNKPLNPRGNDQSPLGFNRAKLFSGKALDFDGVNDHIT
Ga0114922_1097122013300011118Deep SubsurfaceMGVTTTQTNKPFNPRGNDQSPLAFNRAKLYSGKALDFDGVND
Ga0116696_105331413300012284Beach SandMAVGFSNTNKPLNPRGNDASPKGYNRAELYTGKALDFDGVN
Ga0129332_144544513300012969AqueousMAVGFSNTNKPLNPRGNDASPKGYNRAALYSGKALDFDGVN
Ga0129327_1037358923300013010Freshwater To Marine Saline GradientMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKALDFDGVNDDINVTPAPIGAE
Ga0129327_1093332213300013010Freshwater To Marine Saline GradientMAVTTTNNKPLNPRGNDQSPKGYNRAALYSGKALDFDGVNDDINVTPAPI
Ga0180120_1028991813300017697Freshwater To Marine Saline GradientMAVTTTQTNKPFSPRGNDQSPKGYNRAALYSGKALDFDGVNDYITTSLALTSDEV
Ga0181416_112973613300017731SeawaterMGVTTTNNKPFNPRAQDQSPLAFNRAKLYSGKALDFDGVNDSVS
Ga0181392_114846113300017749SeawaterMGVTTTNNKPFNPRGNDQSPKGYNRAALYSGKALDFD
Ga0181407_109798033300017753SeawaterMGVTTTKTNKPFNPRGNDQSPKGYNRAALYSGKALDFDGV
Ga0187217_121752033300017770SeawaterMAVGFSNTNKPLNPRGQDASPKGFNRASLFSGKALDFDGVNDKI
Ga0181577_1009817733300017951Salt MarshMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKAL
Ga0181590_1033574733300017967Salt MarshMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKALDFDGVNDSV
Ga0206125_1004466413300020165SeawaterMATTTTKTNKPILPRGVDNRPVDSYNRAKLFSGKALDFDGVNDLIKTP
Ga0181556_105567313300020176Salt MarshMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKALDFDGVNDSVNCGDF
Ga0206129_1033638713300020182SeawaterMAVQTTLVNKPLNPRGNDQSPLAYNRAKLFSGKALDFDGV
Ga0210341_112974933300021337EstuarineMSVTISTTNKPLNPRAQDLSPKGYNRASLYSGKALDFDGVNDYV
Ga0222716_1053351613300021959Estuarine WaterMATSTTKINKPFSPRGNDQSPKGYNRAALYSGKALDF
Ga0212021_101374313300022068AqueousMAVTTTQTNKPFNPRGNDQSPKGYNRAALYSGKALDFDGVNDYVDC
Ga0196889_104157213300022072AqueousMATSTVNTNKPIIPRGVDDRPVDKYNRAALYSGKALDF
Ga0196889_107876013300022072AqueousMAASTVNTNKPIIPRGVDDRPVDKYNRAELYSGKALDFDGVNDSVSVG
Ga0196903_100075513300022169AqueousMATSTVNTNKPIIPRGVDDRTVDKYNRASLFSGKALDFDGVNDYVRTPNISVQ
Ga0196903_101811513300022169AqueousMGVTTTKTNKPINPRGNDSSPLKYNRAALYSGKALSFDGVNDYV
Ga0212031_101837513300022176AqueousMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKALDFDGVNDSVNCGDFDGA
Ga0196905_115686633300022198AqueousMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKALSFDGVND
Ga0196901_107584713300022200AqueousMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKALDFDGVNDVVNIT
Ga0196901_110946223300022200AqueousMAASTDKTNKPLIPRGVDDRPVDKYNRAELYSGKALSFDGVNDLVT
Ga0196901_124147523300022200AqueousMSVSVSTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVNDTIN
Ga0210321_106318223300022384EstuarineMSVTISTTNKPLNPRAQDLSPKGYNRASLYSGKALDFDGVNDYVDCGTLDV
Ga0255779_118508233300022922Salt MarshMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKALDFD
Ga0255752_1022539313300022929Salt MarshMATTTTKTKKPLIPRAKDYSPSPIGYNRGALYSGKVLDFDGVNDYVN
(restricted) Ga0233438_1003091443300024255SeawaterMGVTTTNNKPFNPRGNDQSPKGYNRAKLYSGKALDF
Ga0210003_113035613300024262Deep SubsurfaceMSVSVSTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVNDYVE
Ga0210003_118706113300024262Deep SubsurfaceMATTTTTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVNDYVDCG
(restricted) Ga0255048_1009152713300024518SeawaterMAVTTDKTNKPILPRGADVRPIDSYNRAELYSGKALDFDGVNDVVNIGAE
Ga0208434_110444123300025098MarineMGVTTTQTNKPFNPRGNDQSPKGYNRAALYSGKALDFDGV
Ga0208149_103160333300025610AqueousMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKALDFDGVNDNVAAPNLSILST
Ga0209405_102708013300025620Pelagic MarineMATSTTRTNKPILPRGNDQSPLAYNRAKLFSGKALSFDGVNDSVFLSDFTLT
Ga0208643_102012913300025645AqueousMAVQTTKTNKPLNPRGNDQSPKGYNRAALYSGKALDFDGVN
Ga0208643_106079523300025645AqueousMATSTVNTNKPIIPRGVDDRPVDKYNRAELYSGKALD
Ga0208134_116599813300025652AqueousMGVTTTQTNKPFNPRGNDQSPKGFNRSKLYSGKALS
Ga0209653_103355613300025695MarineMAVTTTQTNKPILPRGADVRPIDSYNRAELYSGKALDFDGVNDYVDVP
Ga0208899_102519443300025759AqueousMAVTTTQTNKPFNPRGNDQSPKGYNRAALYSGKALDFDG
Ga0208767_114899823300025769AqueousMGVTTTKTNKPINPRGNDSSPLKYNRAALYSGKALDFDGVNDSVN
Ga0208427_109755613300025771AqueousMAVTVSTTNKPLIPRAKDYSPSPIGYNRGALYSGKALDFD
Ga0208545_108013823300025806AqueousMAASTVNTNKPIIPRGVDDRPVDKYNRAELYSGKALDFDGVNDY
Ga0208542_119879813300025818AqueousMATTTTTTNKPLIPRAKDYSPSPIGYNRGALYSGKALDFDGVNDQVNVTTSDL
Ga0208917_104946223300025840AqueousMAVTVSTTNKPLIPRAKDYSPSPIGYNRGALYSGKALDFDGV
Ga0208917_117437023300025840AqueousMAVTTTNINKPINPRGDDKSPLAFNRAKIYSGKALDFDGVND
Ga0208645_105623933300025853AqueousMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKALDFDGVNDY
Ga0209666_116681133300025870MarineMGVTTTQTNKPFNPRGNDQSPKGYNRAKLYSGKALDFDGVNDYVTFDGF
Ga0208544_1016434313300025887AqueousMATSTVNTNKPIIPRGVDDRPVDKYNRAALYSGKALDFDGVNDILT
Ga0233395_114817613300026511SeawaterMGVTTTNNKPINPRGNDQSPKGYNRASLFSGKALDFDGVNDTITGSSSSLPASGY
Ga0209536_10278290433300027917Marine SedimentMSVSVSTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVNDS
Ga0228674_103150633300028008SeawaterMAVGFSNTNKPLNPRGQDASPKGYNRAALYSGKALDFDGVNDVVTTT
Ga0256417_112424313300028233SeawaterMAVGFSNTNKPLNPRGQDASPKGYNRASLFSGKALDFDGVNDTIT
Ga0307380_1080345133300031539SoilMAVTIDNTNKPLIPRGDDISPKGYNRAALYSGKALDFD
Ga0307379_1091383123300031565SoilMATTTTKTNKPILPRGVDNRPVDSYNRAKLFSGKALDFDGVNDQVF
Ga0307379_1150872813300031565SoilMATTTNKTNKPILPRGVDNRPVDSYNRAKLFSGKALDFDGV
Ga0307378_1070354023300031566SoilMATTTTTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVNDYVDCGTLDVTA
Ga0307376_1080505013300031578SoilMSVSVSTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVNDYVDLDGFTLS
Ga0307376_1096509213300031578SoilMGVTTTQTNKPLNPRAQDASPLAYNRAALYSGKALDFDGVNDK
Ga0307377_1018607133300031673SoilMATTTTKTNKPILPRGVDNRPVDSYNRAKLFSGKA
Ga0307377_1036266633300031673SoilMATTTTTTNKPLNPRAQDLSPKGYNRANIFSGKALDFDGVNDNVDIGSFSMSG
Ga0307377_1094544613300031673SoilMSVSVSTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVNDTITGSSAAL
Ga0316208_106710833300032254Microbial MatMAVTTTQTNKPFNPRGNDQSPKGYNRAALYSGKAL
Ga0316202_1031458323300032277Microbial MatMAVTTTQTNKPFNPRGNDQSPKGYNRAALYSGKALDFDGV
Ga0348335_036708_2_1543300034374AqueousMSVSVSTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVNDLITGQIGGS
Ga0348336_047089_3_1343300034375AqueousMAVTTTQTNKPINPRGNDQSPKGYNRAALYSGKALDFDGVNDYV
Ga0348337_035809_2070_21983300034418AqueousMSVSVSTTNKPLNPRAQDLSPKGYNRAALYSGKALDFDGVNDY


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