3300011738: Mine pit pond microbial communities from Vermont, USA - 1M

Overview

Basic Information

• IMG/M Taxon OID: 3300011738
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118613 | Gp0137476 | Ga0120086
• Sample Name: Mine pit pond microbial communities from Vermont, USA - 1M
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Vermont
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26682203
• Sequencing Scaffolds: 38
• Novel Protein Genes: 50
• Associated Families: 50

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
Not Available	13
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Mine Pit Pond Microbial Communities From Vermont, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → mine → alkaline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Vermont
• Coordinates
  • Lat. (^o): 43.727094
  • Long. (^o): -72.425964
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F000346	Metagenome / Metatranscriptome	1253	Y
F000843	Metagenome / Metatranscriptome	864	Y
F001477	Metagenome / Metatranscriptome	687	Y
F002052	Metagenome / Metatranscriptome	599	Y
F003266	Metagenome / Metatranscriptome	496	Y
F003378	Metagenome / Metatranscriptome	490	Y
F003863	Metagenome	464	Y
F006653	Metagenome / Metatranscriptome	367	Y
F007691	Metagenome / Metatranscriptome	346	Y
F008879	Metagenome / Metatranscriptome	326	Y
F009260	Metagenome / Metatranscriptome	320	Y
F011383	Metagenome / Metatranscriptome	291	Y
F013634	Metagenome / Metatranscriptome	269	Y
F014237	Metagenome	264	Y
F018369	Metagenome	235	Y
F023296	Metagenome / Metatranscriptome	210	Y
F027417	Metagenome	194	Y
F028157	Metagenome	192	Y
F028495	Metagenome / Metatranscriptome	191	N
F029412	Metagenome	188	Y
F030691	Metagenome / Metatranscriptome	184	Y
F033428	Metagenome	177	Y
F035651	Metagenome	171	Y
F037069	Metagenome / Metatranscriptome	168	Y
F039995	Metagenome / Metatranscriptome	162	Y
F040070	Metagenome / Metatranscriptome	162	N
F041075	Metagenome / Metatranscriptome	160	N
F041769	Metagenome	159	Y
F046382	Metagenome	151	Y
F046686	Metagenome	151	Y
F048001	Metagenome	149	Y
F049613	Metagenome / Metatranscriptome	146	Y
F051758	Metagenome / Metatranscriptome	143	N
F053252	Metagenome / Metatranscriptome	141	N
F058946	Metagenome / Metatranscriptome	134	N
F061545	Metagenome / Metatranscriptome	131	Y
F067670	Metagenome	125	Y
F068483	Metagenome	124	N
F071028	Metagenome / Metatranscriptome	122	Y
F072330	Metagenome / Metatranscriptome	121	N
F073056	Metagenome / Metatranscriptome	120	Y
F076067	Metagenome / Metatranscriptome	118	Y
F076928	Metagenome	117	Y
F080975	Metagenome / Metatranscriptome	114	N
F083438	Metagenome / Metatranscriptome	113	Y
F083742	Metagenome / Metatranscriptome	112	Y
F093255	Metagenome / Metatranscriptome	106	N
F098551	Metagenome / Metatranscriptome	103	Y
F100666	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120086_100032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29935
Ga0120086_100036	Not Available	28561
Ga0120086_100037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	28110
Ga0120086_100130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	13784
Ga0120086_100150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	11637
Ga0120086_100235	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8296
Ga0120086_100276	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6855
Ga0120086_100313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	6160
Ga0120086_100340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	5655
Ga0120086_100444	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4290
Ga0120086_100445	All Organisms → cellular organisms → Bacteria	4285
Ga0120086_100466	Not Available	4099
Ga0120086_100539	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3563
Ga0120086_100581	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3336
Ga0120086_100892	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	2364
Ga0120086_101155	All Organisms → Viruses → Predicted Viral	1961
Ga0120086_101293	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1817
Ga0120086_102398	All Organisms → Viruses → Predicted Viral	1228
Ga0120086_102444	Not Available	1213
Ga0120086_102748	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1134
Ga0120086_103012	Not Available	1075
Ga0120086_103615	Not Available	964
Ga0120086_104057	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	901
Ga0120086_104775	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	824
Ga0120086_104971	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	805
Ga0120086_106079	Not Available	714
Ga0120086_106318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	698
Ga0120086_106460	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	689
Ga0120086_107294	Not Available	641
Ga0120086_107333	Not Available	639
Ga0120086_107756	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	617
Ga0120086_108387	Not Available	586
Ga0120086_109082	Not Available	558
Ga0120086_109362	Not Available	547
Ga0120086_109494	Not Available	543
Ga0120086_109848	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli	530
Ga0120086_110182	Not Available	519
Ga0120086_110224	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120086_100032	Ga0120086_10003221	F028495	MSVQMNETESVVGFPALESNYAVLINNAIGEHRNADVNYIVRSYNMEKNNITRKSVIERLRDAF*
Ga0120086_100036	Ga0120086_10003636	F006653	MSEQLSNKYRDNLRIDAVRDATNGLRAELDALKVDVTNFVGALLQSGVVELVKDEEGNIVYKINKVVLVDESVQQD*
Ga0120086_100036	Ga0120086_10003646	F003863	MESRQVSGRQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIIDSNSRLTVGVHTRANAVPPFGDPADAGEDEGYDGGEA*
Ga0120086_100036	Ga0120086_10003647	F001477	MSNIYTIHPPKSDLILFYEVVTPEGENEWGGASAQQAIQWLSLAPKGARVLVSAWDSDEEDAHLVGQTIDITEIIQQARQVGR*
Ga0120086_100036	Ga0120086_10003650	F027417	MSYDYRVTFVTDYLTITTNVCLELDDTIGNLSDEAYEQATINGMNNIEDELGKIDETIINDITVTLLLDEEEIELGSFGEFPPVHVEVSNG*
Ga0120086_100036	Ga0120086_10003651	F007691	METINQLVNEIYEDNYSHLEFDDNMGGDCDCHIHTTLKTIVKYWHEEESK*
Ga0120086_100037	Ga0120086_10003723	F058946	MWAMNELEMPDDDSPRPNLANIPSMDDMLALYEKVLAELDSAISTQRDFAADDKQSNARHSNNYFT*
Ga0120086_100130	Ga0120086_1001306	F000843	MPLYHITPNQLPQVWPTAAPLLQKAIDLDPSAITIEQVEYAVRTGKTFLLVWEEPDVGITGAVTLEFVDYPRERVAHVNLMGGKSIVRTHVFAEAMDWMRAYGATKAQCWARGTLVQMYEKMGMENTHQVMRITL*
Ga0120086_100150	Ga0120086_1001502	F030691	MAEPTSGPDAARTQAMRSPATQTSGSSTSGEVAFDVFVKGISQASNDARLALAERLKEAGIWTGKVSSKFDLKYYTALAKLEERYQGQIALDKMIGATTPTKRYDVLTSIISGDEEGGDSGPTTTRQTYVTSASQTAKLLDTIAVDLLERKLTKAEKAKYLKMINAEQRKQPSVQTAGKGFVTTKGGVDEEQFITEKLEATSEAKTVRATDAYAIMMQEFGGLR*
Ga0120086_100235	Ga0120086_1002354	F033428	MSRTEGALVDAVYVNPLQSRFAVLDPKLQHVIRDIADESFGSISMTPATERRVGIARILLEIAEQEGHIDKDLVRSVCMHRTGKQYQSAGLALADLSYIDAERVWSSLQDIYAERAVLEYIPVSNHYIIKENTHG*
Ga0120086_100235	Ga0120086_1002356	F041769	MNEEAQMRIAELSTALGTVTDQRDNLQDSLDSAIKELDAYKSHITALTSTVERLRLHIAQGVEL*
Ga0120086_100235	Ga0120086_1002358	F028157	MNIDALAPRFVTVMADHDGHARWIATLDCTDVMNAYRTRGLYLLVTLNAEGEATVAFKPGNDWSTTWSPPVTVERR*
Ga0120086_100276	Ga0120086_1002761	F048001	MANTEIQYLKNEIKQLKADMANLIMALIELKVFKIKIDENGNAVYDTGKDVKSEVQ*
Ga0120086_100276	Ga0120086_10027612	F046686	VKAGLTTLPTTNEVRLMELLNSLENVVHDLNYKSFTAYDTLNTAIQGVRAALSVTLIEEGGTNE*
Ga0120086_100313	Ga0120086_1003134	F083438	MKKGTQAPASMSKPVEGSKAGSVVTGGKVMAPFAGAAKPGKKVKK*
Ga0120086_100340	Ga0120086_1003405	F071028	MAYMATTPWEYQTWGANKPWPDQYTRLSQRRIQGGTETGEINPFLTDIARGVTLIYINGHIETTLYPYQNTLADADWYILGGHTQEITDEQAAILIAEGYGDYVEPIV*
Ga0120086_100444	Ga0120086_1004445	F098551	MREYQVGDDVSWGINGDSYYAGKIARISKKFIWTDQGYKFTRIGDHYRATGNKYSWMTPGRREYLDPHF*
Ga0120086_100445	Ga0120086_1004456	F003378	MTTDMPIKQNGTIAKALDLGQRLFSLFLARALPAVTGGALIGVSVAKAAILAGAMAVLEVVQKLASASTDGELTTDEIKTAFSNGKK*
Ga0120086_100466	Ga0120086_1004668	F000346	MDKMDLMQDKKTAAKAVHKHEKALHPGKPLTKMKAGGKTNSDMLKMGRNLAKVANQKSPGRKGA*
Ga0120086_100466	Ga0120086_1004669	F009260	MATYKQPTKVASVVVGEEPAKTTMRKANVAVANTRSQDYPPMKTSGIKIRGTGCATKGVMARGPMA*
Ga0120086_100539	Ga0120086_1005399	F002052	MREYRFQFTVVCKGQGSADEEQVESMIDLACQDLVYDDEFIAALDEKEAVTIQVSRIG*
Ga0120086_100581	Ga0120086_1005811	F076067	VANLIVSAVSTFDNKGLKKGQKEIGAFDKTLKTLGKTFAG
Ga0120086_100892	Ga0120086_1008922	F053252	MFDDMGELSVVGPAERDEIFARVYVEQRALKKGNAAEIACVRAGITSPELNMSIVASRQLARPEVQRLIMVAEASGVEVERREYTRDLFLDELQAVVQAAMDKGAYPSAISAVKTQAQLLGMLDQTVNVNHSVSAKDLDLATLRAMVADRARPVNVIDAVVVRGIGDDTE*
Ga0120086_101155	Ga0120086_1011551	F080975	DEVWALEQDRLLNDAKKQASRSQQVARAKATAVSPKSVTPNGTQAKVEAKDRRSLLMAQLADAESGRL*
Ga0120086_101293	Ga0120086_1012931	F014237	MDTFKNVMMRIFAVIAAESLGVIGAGSLVGIEVWQAATLAGALGAARVLEALARFYLADGSLTSEEINAAFAKVDKKASAE*
Ga0120086_102398	Ga0120086_1023983	F018369	MKNSYIQLSDEGKRQLMRELSLELTDKKIAELMDQFADGVKTDSNGEPYIKIDADDVLCCAVPLYTHFIDINHIETVTANEEDGSDE*
Ga0120086_102398	Ga0120086_1023984	F046382	MAAMNKRNWPYGTDMSEPNWTGRTARQMRDYKRPDDRIPPVAWVMGLLGLALVFGFFPLLSLVML*
Ga0120086_102444	Ga0120086_1024442	F051758	LCCRGSQKYNHEWGLQQLREVWTKTFKSSAAAEDDVQEDDVEMTVEGGASSAGDPADEDPFEKQMRLSYESQARASTVRRYGKPQALDQLEEWMKEKPIPYISNDKFSQEGIFDYWAGRLPGHAHVNQTYPDVVRMWRQFHGCPASGGGIERVFFSAGKQHDALKKRTMDKTLESTMKASINTKLPTCDDKGVFTDDDDTYRKRK*
Ga0120086_102748	Ga0120086_1027482	F008879	MATMFKKGDVVKVKTVVPQGPVKALRMDEDGNVYCLIEWTDVNGETQERWIDESLLTSGD
Ga0120086_102994	Ga0120086_1029941	F000141	RDTEFLWLDKLDTPEGFKAYQCMDCGCVGVKNVVEALHIPDSDICRCDKCGSWKFETVVCHTCQLIGAK*
Ga0120086_103012	Ga0120086_1030121	F076928	MSIEGVTVTKIIEPQQLGVWNDKIIYICFGKFGYY*RYDEKNYSIPLWAQKENLNEMFNLTHAINIIDWKIRNKVPRGEAGCK*
Ga0120086_103615	Ga0120086_1036152	F083742	RAEEINALKQELAKKDEETAKLKAETDAKLAQMQEQMAAILAAVGEKKPRTRKPKVVEES
Ga0120086_104057	Ga0120086_1040572	F011383	MLADWGKTSSVCEALWAAAEAPDTTISVTLTAATGAQFVFPILPEFPTAGGAGTDAQTVDFTFKVANGTVTETFS*
Ga0120086_104775	Ga0120086_1047754	F029412	MINERIEALQKRERVCWDMSEVFLHAKDAHGLHDMGVEIQGIQWALRELEGLLK*
Ga0120086_104971	Ga0120086_1049711	F061545	AVAYADDGYIKGKLSVALQVLAELKRVLKEDAGLELNIAKTSILPKAISQQAVFDIAHSIIAASPALTPLSNDIVKDSFCPEGFIGIGVPIGTDAFVRTFVAKTCRDIIDDVEKLDAIQDGFIHYQLLRFCQATRLQYINSHVMLPNRCVLQQQHVDCKIADALLKKGTKQHADGWDAPSKAWAHMCIHLPHAEGGFGVQFNDVTKDAAFYTTTSRFVAWFGAFSQERQSLWLPKDDLRDSSSWTSPPLVLLRDIHSKLLTQYDCKEV
Ga0120086_106079	Ga0120086_1060792	F041075	MAFTPPRSVRIPDVLWRKAKAKAKAQHTTVTAVIVRALYEWVNEK*
Ga0120086_106318	Ga0120086_1063181	F067670	TVTTYVKLKSKWWAHSRFQTAWQLLTKGYVEYEASIIMTEQQAINYAETLKTAAKEVKAFRETGK*
Ga0120086_106460	Ga0120086_1064602	F073056	MKLEHIIQEANVAAKIKDPKTMKMLVIAMRHDGTLPKTKVAALGPKPTDEDILKLWSDVLDASLRSTDYGDISADGKFDEWLTRMYMNGIVDFEDINGEGGDALGAWKALSVRGKLQEKHQDFNKFKNLRQIQAIINDRGYRDELRKIK
Ga0120086_107294	Ga0120086_1072942	F003266	MSQNHETVKNTLDIVSVFAAIGSFLQLLTPVFGLIGAVWTLMRIAEMISGKPFAEMVRRKKPDAEHE*
Ga0120086_107333	Ga0120086_1073332	F100666	MATTMTFTTLQQDVRRYLERGTTYASDPVVFEQIPRLINLAERRIARELKVQGFINVVSGTLQS
Ga0120086_107756	Ga0120086_1077561	F072330	MLGKLLKRQIQPGLVYTSSGYVDSLGRVGRFFEGNYAGTYVDGRTSLGIPAIFRGISLIADAIGALELCAYRNGREVMPKPNILARPNP
Ga0120086_107758	Ga0120086_1077581	F040070	LMTEYLPAAQSKQSESASLLGDSRYVPGGQLVHVASDDDPLMTEYLPAAQSMHVVSDDEPCSTEYLPAAQSKQSDSASLLPVWIYFPAGQLVHVVPDDEPLMTEYLPAAHAMQSDSASLPIVSRYVPGGQFRHVLLDDEPLMPEYLPASHLIQSDSASLPLVSRYSPGGQSRHVASDDEPLMTEYLPAAQSKQSESASLLGDSRY
Ga0120086_108387	Ga0120086_1083872	F023296	MAKFSMKKGGKEVGPAEVYAAPHTMDGKATNVMADSTTKPGKDKINQMNMSVAGVSKGNYAPINPYGVGVMRGYGAATKGRKISGKMG*
Ga0120086_108559	Ga0120086_1085591	F093255	MIEEYAGGLLMALQKPDGGIRPILCGEIWRICFASLEVNATPVRKESAKLFTSTYDNFIQTAGIRDGASHCANILSVFYDNLNTSDPNDPDVIIKIDISNAFNTTNRALTLDMISGRASRDYACGLKEGAVIPTVNTLSNLFGYFKAMRTCHATLRYFDWDGQVHLAKGKRGGQQ
Ga0120086_109082	Ga0120086_1090822	F035651	MGYYDADPWANHSFNFIDCAECESEFDQQDQEGGNICPTCIDKEEESK*
Ga0120086_109362	Ga0120086_1093621	F068483	EDGRFFIDRGGTAVFQSRIGFSFSTATMSFSDSAGTAYAYQSLSVGYGAETLYNRIQVGVQGLSVATAVDTTSSTEFGVTTLSLSDLPLDTLAAGTALAQNLLDKYKNPVFRFNEIGVTLNGLSPAAGQDVSTLEIGDLVAITKTYTTGSPATVTKTMFVESISHDISPQTHRVSLGLGQ
Ga0120086_109494	Ga0120086_1094941	F037069	RADYNNRPPSAVSFMPAIASTSGRLHSEFVRILFLQAHRETDRFFAASGVQLAQTHPGGQFTFRRAAFLTQLQSKVGLALAKAAALRINISLDGAPIASKSHTHPSHSQTSRLLTSSLSLGVPVPRPTQCVRGV*
Ga0120086_109848	Ga0120086_1098481	F013634	MSNCNKNQNMAIQLAPLVGAGLGALQQSKIEKALAGEKTYTKPKTIFGKLIGGVSGRTAAAEASAQTKTAPLNEKVMNSLQPSAKSTPVSGGISFGGEASRKTYLPFAIVAAVIAAFYFMRKK
Ga0120086_110182	Ga0120086_1101821	F039995	STPLAGVVNTITVTIKANCDLPAGSKVTIHALTGSASKQNASLAVVGGNGGLESTGDWDGTGNLTMTSLGMLQHGTYEARFNLTNPATNQSSPQVMISATVMSVYGDMSPVVSTAMVRKEVELLGVPNGSNPLEVVVPFFEVKTVEQNTPLAGVVNTITVTIKANCDLPAGS
Ga0120086_110224	Ga0120086_1102242	F049613	SNGIMTPNEARVYLNMPKIDGYDDLVPKSEPAEPISGSSPQDTGGGGGNQTRKMNIGAT*