Metagenome / Metatranscriptome Family F083438

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F083438
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	46 residues
Representative Sequence	MKKGTQAPAPMSKPVEGSKAGDKVTGGKVMAPFAGAAKPGKKVKK
Number of Associated Samples	84
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.58 %
% of genes near scaffold ends (potentially truncated)	8.85 %
% of genes from short scaffolds (< 2000 bps)	61.95 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.12

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (50.442 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (23.894 % of family members)
Environment Ontology (ENVO)	Unclassified (37.168 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (69.912 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.12
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.12
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF03237	Terminase_6N	2.65
PF13252	DUF4043	2.65
PF00535	Glycos_transf_2	0.88
PF03796	DnaB_C	0.88
PF01930	Cas_Cas4	0.88
PF01391	Collagen	0.88
PF04545	Sigma70_r4	0.88
PF12705	PDDEXK_1	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.88
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.88
COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	Defense mechanisms [V]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.37 %
Unclassified	root	N/A	33.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.44 %
Unclassified	root	N/A	33.63 %
Viruses	superkingdom	All Organisms → Viruses	15.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.44 %
Unclassified	root	N/A	33.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.04 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.88 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.44 %
Unclassified	root	N/A	33.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.04 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	50.44 %
Unclassified	root	N/A	33.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.04 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	50.44 %
Unclassified	root	N/A	33.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.04 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	49.56 %
Unclassified	root	N/A	33.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.04 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.88 %

Name	Rank	Taxonomy	Distribution
actinobacterium acIB-AMD-7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	49.56 %
Unclassified	root	N/A	33.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.04 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.88 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001371\|BBDRAFT_10264256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1281	Open in IMG/M
3300001687\|WOR8_10023612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	6013	Open in IMG/M
3300001836\|RCM27_1006818	Not Available	586	Open in IMG/M
3300001842\|RCM30_1013266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1756	Open in IMG/M
3300001847\|RCM41_1132351	Not Available	727	Open in IMG/M
3300001848\|RCM47_1164051	Not Available	546	Open in IMG/M
3300001849\|RCM26_1029901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1202	Open in IMG/M
3300001850\|RCM37_1036563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	755	Open in IMG/M
3300001851\|RCM31_10022463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	779	Open in IMG/M
3300002092\|JGI24218J26658_1005880	Not Available	2423	Open in IMG/M
3300002098\|JGI24219J26650_1006834	All Organisms → Viruses → Predicted Viral	2176	Open in IMG/M
3300002212\|metazooDRAFT_1358544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	587	Open in IMG/M
3300002447\|JGI24768J34885_10005337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	4212	Open in IMG/M
3300002930\|Water_102926	All Organisms → Viruses → Predicted Viral	2860	Open in IMG/M
3300004448\|Ga0065861_1017057	Not Available	2454	Open in IMG/M
3300004460\|Ga0066222_1021859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	938	Open in IMG/M
3300004461\|Ga0066223_1008700	Not Available	627	Open in IMG/M
3300004461\|Ga0066223_1008701	Not Available	594	Open in IMG/M
3300004461\|Ga0066223_1032257	Not Available	658	Open in IMG/M
3300004481\|Ga0069718_10078161	All Organisms → Viruses → Predicted Viral	1769	Open in IMG/M
3300004481\|Ga0069718_14978585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	635	Open in IMG/M
3300004481\|Ga0069718_15607431	Not Available	586	Open in IMG/M
3300004481\|Ga0069718_16299361	All Organisms → Viruses → Predicted Viral	1811	Open in IMG/M
3300004693\|Ga0065167_1039107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	768	Open in IMG/M
3300004775\|Ga0007798_10063456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	823	Open in IMG/M
3300004804\|Ga0007796_10002530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	7052	Open in IMG/M
3300005525\|Ga0068877_10458860	Not Available	710	Open in IMG/M
3300006030\|Ga0075470_10049401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1290	Open in IMG/M
3300006802\|Ga0070749_10000749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	21771	Open in IMG/M
3300006802\|Ga0070749_10450742	Not Available	705	Open in IMG/M
3300006803\|Ga0075467_10654256	Not Available	536	Open in IMG/M
3300006875\|Ga0075473_10299287	Not Available	651	Open in IMG/M
3300008072\|Ga0110929_1002213	Not Available	31960	Open in IMG/M
3300009009\|Ga0105105_10201610	All Organisms → Viruses → Predicted Viral	1031	Open in IMG/M
3300009081\|Ga0105098_10093246	All Organisms → Viruses → Predicted Viral	1291	Open in IMG/M
3300009082\|Ga0105099_10012301	All Organisms → Viruses → Predicted Viral	4341	Open in IMG/M
3300009151\|Ga0114962_10002058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	17091	Open in IMG/M
3300009151\|Ga0114962_10004065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	11709	Open in IMG/M
3300009151\|Ga0114962_10004439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	11169	Open in IMG/M
3300009151\|Ga0114962_10109800	All Organisms → Viruses → Predicted Viral	1705	Open in IMG/M
3300009151\|Ga0114962_10163129	All Organisms → Viruses → Predicted Viral	1330	Open in IMG/M
3300009164\|Ga0114975_10124025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1487	Open in IMG/M
3300009169\|Ga0105097_10107724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1525	Open in IMG/M
3300009180\|Ga0114979_10657392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	596	Open in IMG/M
3300009182\|Ga0114959_10004617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	10509	Open in IMG/M
3300009183\|Ga0114974_10002418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	14318	Open in IMG/M
3300009183\|Ga0114974_10034606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	3467	Open in IMG/M
3300009184\|Ga0114976_10391916	Not Available	728	Open in IMG/M
3300009184\|Ga0114976_10709448	Not Available	504	Open in IMG/M
3300009450\|Ga0127391_1000489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	8447	Open in IMG/M
3300010157\|Ga0114964_10035771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	2693	Open in IMG/M
3300010354\|Ga0129333_11020424	Not Available	694	Open in IMG/M
3300010388\|Ga0136551_1011041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1869	Open in IMG/M
3300010885\|Ga0133913_10102142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	7679	Open in IMG/M
3300010885\|Ga0133913_10276778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	4451	Open in IMG/M
3300010885\|Ga0133913_10747278	All Organisms → Viruses → Predicted Viral	2554	Open in IMG/M
3300010885\|Ga0133913_11189693	Not Available	1956	Open in IMG/M
3300011116\|Ga0151516_10262	Not Available	29636	Open in IMG/M
3300011335\|Ga0153698_1483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	16479	Open in IMG/M
3300011738\|Ga0120086_100313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	6160	Open in IMG/M
3300012352\|Ga0157138_1016032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1211	Open in IMG/M
3300012665\|Ga0157210_1004648	All Organisms → Viruses → Predicted Viral	2895	Open in IMG/M
3300013286\|Ga0136641_1014748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	2498	Open in IMG/M
3300014711\|Ga0134314_102429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1320	Open in IMG/M
3300014962\|Ga0134315_1001331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	4697	Open in IMG/M
3300014962\|Ga0134315_1012823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1320	Open in IMG/M
3300014962\|Ga0134315_1020409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1027	Open in IMG/M
3300014962\|Ga0134315_1028848	Not Available	860	Open in IMG/M
3300014962\|Ga0134315_1074160	Not Available	521	Open in IMG/M
3300017754\|Ga0181344_1052862	All Organisms → Viruses → Predicted Viral	1210	Open in IMG/M
3300017754\|Ga0181344_1142246	Not Available	686	Open in IMG/M
3300017785\|Ga0181355_1052166	All Organisms → Viruses → Predicted Viral	1736	Open in IMG/M
3300017785\|Ga0181355_1075839	All Organisms → Viruses → Predicted Viral	1409	Open in IMG/M
3300021438\|Ga0213920_1002235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	9423	Open in IMG/M
3300021438\|Ga0213920_1014640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	2122	Open in IMG/M
3300021438\|Ga0213920_1022631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1529	Open in IMG/M
3300021438\|Ga0213920_1026090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1375	Open in IMG/M
3300021519\|Ga0194048_10110451	All Organisms → Viruses → Predicted Viral	1053	Open in IMG/M
3300021952\|Ga0213921_1019368	Not Available	1162	Open in IMG/M
3300021956\|Ga0213922_1048443	Not Available	952	Open in IMG/M
3300022747\|Ga0228703_1037396	Not Available	1394	Open in IMG/M
3300022752\|Ga0214917_10002056	Not Available	25093	Open in IMG/M
3300023174\|Ga0214921_10191683	All Organisms → Viruses → Predicted Viral	1295	Open in IMG/M
3300023184\|Ga0214919_10006361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	16266	Open in IMG/M
3300024289\|Ga0255147_1000344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	14930	Open in IMG/M
3300024509\|Ga0255175_1101686	Not Available	502	Open in IMG/M
3300024561\|Ga0255288_1077422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	745	Open in IMG/M
3300024573\|Ga0256337_1181231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	522	Open in IMG/M
3300025616\|Ga0208613_1011583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	2336	Open in IMG/M
3300026571\|Ga0255289_1161903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	503	Open in IMG/M
3300027693\|Ga0209704_1093881	Not Available	849	Open in IMG/M
3300027708\|Ga0209188_1000663	Not Available	32128	Open in IMG/M
3300027708\|Ga0209188_1001651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	17445	Open in IMG/M
3300027708\|Ga0209188_1008843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	5893	Open in IMG/M
3300027708\|Ga0209188_1053800	Not Available	1774	Open in IMG/M
3300027712\|Ga0209499_1328591	Not Available	512	Open in IMG/M
3300027734\|Ga0209087_1001671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	12952	Open in IMG/M
3300027734\|Ga0209087_1007143	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5899	Open in IMG/M
3300027749\|Ga0209084_1009580	Not Available	5966	Open in IMG/M
3300027759\|Ga0209296_1001197	Not Available	20535	Open in IMG/M
3300027792\|Ga0209287_10013496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	3011	Open in IMG/M
3300027792\|Ga0209287_10025238	All Organisms → Viruses → Predicted Viral	2154	Open in IMG/M
3300027836\|Ga0209230_10270599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	979	Open in IMG/M
3300027899\|Ga0209668_10977320	Not Available	571	Open in IMG/M
3300027969\|Ga0209191_1073689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1505	Open in IMG/M
3300028025\|Ga0247723_1001129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	16119	Open in IMG/M
3300030943\|Ga0311366_11600433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	558	Open in IMG/M
3300031565\|Ga0307379_11159885	Not Available	644	Open in IMG/M
3300031578\|Ga0307376_10997555	Not Available	505	Open in IMG/M
3300031857\|Ga0315909_10422918	Not Available	947	Open in IMG/M
3300031902\|Ga0302322_103999402	Not Available	503	Open in IMG/M
3300033994\|Ga0334996_0281891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	837	Open in IMG/M
3300034061\|Ga0334987_0390729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	885	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	94.69%
Terrestrial	Environmental → Terrestrial	5.31%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	81.42%
Marine	Environmental → Aquatic → Marine	12.39%
Soil	Environmental → Terrestrial → Soil	1.77%
Peat	Environmental → Terrestrial → Peat	1.77%
Unclassified	Environmental → Aquatic → Unclassified	0.89%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.89%
Geologic	Environmental → Terrestrial → Geologic	0.89%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	30.97%
Lentic	Environmental → Aquatic → Freshwater → Lentic	13.27%
Sediment	Environmental → Aquatic → Freshwater → Sediment	9.73%
Coastal	Environmental → Aquatic → Marine → Coastal	9.73%
Lotic	Environmental → Aquatic → Freshwater → Lotic	8.85%
Creek	Environmental → Aquatic → Freshwater → Creek	6.19%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	5.31%
River	Environmental → Aquatic → Freshwater → River	4.42%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.77%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.77%
Clay	Environmental → Terrestrial → Soil → Clay	1.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.77%
Pond	Environmental → Aquatic → Freshwater → Pond	0.89%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.89%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.89%
Mine	Environmental → Terrestrial → Geologic → Mine	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	30.97%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	11.50%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	9.73%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	9.73%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	8.85%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	6.19%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	5.31%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.77%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.89%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.89%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	0.89%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.89%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.89%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.89%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	23.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	6.19%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	6.19%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	6.19%
Surface Water	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water	5.31%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	4.42%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.42%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	4.42%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.42%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	4.42%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	3.54%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	3.54%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	2.65%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	1.77%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	1.77%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.77%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.77%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.77%
Lake	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake	0.89%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.89%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.89%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.89%
Water Bodies	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies	0.89%
Pond Fresh Water	Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water	0.89%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.89%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.89%
Estuary Water	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water	0.89%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine	0.89%
Meromictic Pond	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond	0.89%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.89%
Mine Pit Pond	Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001371	Baker-B-sed	Environmental	Open in IMG/M
3300001687	Deep Marine Sediments WOR-3-8_10	Environmental	Open in IMG/M
3300001836	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM27, ROCA_DNA191_0.2um_MCP-N_C_3a	Environmental	Open in IMG/M
3300001842	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM30, ROCA_DNA203_0.2um_MCP-S_C_2b	Environmental	Open in IMG/M
3300001847	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a	Environmental	Open in IMG/M
3300001848	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM47, ROCA_DNA265_0.2um_TAP-S_3a	Environmental	Open in IMG/M
3300001849	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b	Environmental	Open in IMG/M
3300001850	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a	Environmental	Open in IMG/M
3300001851	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b	Environmental	Open in IMG/M
3300002092	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome	Environmental	Open in IMG/M
3300002098	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome	Environmental	Open in IMG/M
3300002212	Freshwater microbial communities from San Paulo Zoo lake, Brazil - JAN 2013	Environmental	Open in IMG/M
3300002447	Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome	Environmental	Open in IMG/M
3300002930	Estuary water microbial communities from Pearl Estuary, Zhujiang, China	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004460	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300004693	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (version 2)	Environmental	Open in IMG/M
3300004775	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M	Environmental	Open in IMG/M
3300004804	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0M	Environmental	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300006875	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA	Environmental	Open in IMG/M
3300008072	Microbial Communities in Water bodies, Singapore - Site MA	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009151	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG	Environmental	Open in IMG/M
3300009164	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009180	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG	Environmental	Open in IMG/M
3300009182	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M
3300009450	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UD	Environmental	Open in IMG/M
3300010157	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300010388	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300011116	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov	Environmental	Open in IMG/M
3300011335	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman	Environmental	Open in IMG/M
3300011738	Mine pit pond microbial communities from Vermont, USA - 1M	Environmental	Open in IMG/M
3300012352	Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37	Environmental	Open in IMG/M
3300012665	Freshwater microbial communities from Talbot River, Ontario, Canada - S11	Environmental	Open in IMG/M
3300013286	Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y	Environmental	Open in IMG/M
3300014711	Surface water microbial communities from Bangladesh - BaraHaldiaSW0111	Environmental	Open in IMG/M
3300014962	Surface water microbial communities from Bangladesh - BaraHaldiaSW0309	Environmental	Open in IMG/M
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300021438	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG	Environmental	Open in IMG/M
3300021519	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m	Environmental	Open in IMG/M
3300021952	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG	Environmental	Open in IMG/M
3300021956	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG	Environmental	Open in IMG/M
3300022747	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG	Environmental	Open in IMG/M
3300022752	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB	Environmental	Open in IMG/M
3300023174	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505	Environmental	Open in IMG/M
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental	Open in IMG/M
3300024289	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h	Environmental	Open in IMG/M
3300024509	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8d	Environmental	Open in IMG/M
3300024561	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepA_8d (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024573	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025616	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M (SPAdes)	Environmental	Open in IMG/M
3300026571	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepB_8d (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027693	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027708	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027712	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027734	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027749	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027792	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027836	Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027969	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
BBDRAFT_102642562	3300001371	Marine Estuarine	MNKGTQAPASMSKPIHGAAGAGARVTGGEVKQPFAGTPKPGKKVKK*
WOR8_100236122	3300001687	Marine Sediment	MKKGTQAPAPMSKPVEGSKAGDKVSGGKVMAPFAGAAKPGKKVKK*
RCM27_10068181	3300001836	Marine Plankton	GTHASAPMSKPVEGSKAGDKVTGGKVYQPFAGAAKPGKKVKKG*
RCM30_10132662	3300001842	Marine Plankton	MKKGTHAAAPMSKPVEGKKAGDKVTGGKVYQPFAGAAKPGKKVKKG*
RCM41_11323513	3300001847	Marine Plankton	MKKGTSPAAPMSKPVEGKKEGDKVQGGKVYQPFAGAAKPGKKVKKG*
RCM47_11640512	3300001848	Marine Plankton	VRKGTSAAAPMSKPVEGKKEGDKVQGGKVYQPFAGAAKPGKKVKKG*
RCM26_10299012	3300001849	Marine Plankton	MKKGTHAPAPMSKPVEGSKAGDKVTGGKVYQPFAGAAKPGKKVKKG*
RCM37_10365632	3300001850	Marine Plankton	MKKGTHAPAPMSKPVEGTKAGDKVTGGKVYQPFAGAAKPGKKVKKG*
RCM31_100224632	3300001851	Marine Plankton	MKKGTHAAAPMSKPVEGSKAGDKVTGGKVYQPFAGAAKPGKKVKKG*
JGI24218J26658_10058804	3300002092	Lentic	MNKGSQAPAPMSKPVEGKTAGDKVTGGKVYQPFAGAAKSGKKVKK*
JGI24219J26650_10068342	3300002098	Lentic	MNKGSQAPAPMAKPIHGAAGAGAKVTGGDVKQPFAGAAKPGKSVKK*
metazooDRAFT_13585441	3300002212	Lake	MKKGTHAPAPMSKPVEGKKGGDKVSGGEVKKPFAGTPKPGKKVKKG*
JGI24768J34885_100053374	3300002447	Freshwater And Sediment	MKKGTHAPASMSKPTEGAMGATTKVAGGKVEQPYTAAARPGKKVKK*
Water_1029265	3300002930	Estuary Water	MNKGSQAPAPMSKPIHGASGAGAKVTGGKVEMPFAGAAKPGKKVKK*
Ga0065861_10170572	3300004448	Marine	MNKGSQAPAPMAKPIHGTAGAGAKVTGGDVKMPFAGAAKPGKAVKK*
Ga0066222_10218592	3300004460	Marine	MNKGTQAPAPMSKPVHGAAGAGAKVTGGDVKMPFAGAAKPGKMVKKGK*
Ga0066223_10087002	3300004461	Marine	MNKGSQAPAPMAKPIHGTAGAGAKVTGGKVEMPFAGAAKPGKAVKK*
Ga0066223_10087012	3300004461	Marine	MNKGSQAPAPMSKPIHGAAGAGAKVTGGDVKMPFAGAAKPGKMVKKGK*
Ga0066223_10322572	3300004461	Marine	MNKGSQAPAPMSKPIHGAAGAGAKVTGGKVEMPFAGAAKPGKKVKK*
Ga0069718_100781612	3300004481	Sediment	MKKGTQAPASMSKPTEGAMGSTTKVAGGKVMAPFAGTPKPGTMVKKSK*
Ga0069718_149785851	3300004481	Sediment	MKKGTQAPAPMSKPVEGSKAGDKVTGGKVYQPFAGTPKPGK
Ga0069718_156074311	3300004481	Sediment	MKKGTQAPASMSKPVEGSKAGSVVTGGKVMAPFAGTPKPGTMVKKSK*
Ga0069718_162993614	3300004481	Sediment	MNKGSQAPAPMSKPIHGAAGAGAKVTGGAVKQPFAGTPKPGKKVKK*
Ga0065167_10391072	3300004693	Freshwater	MKKGTQAAAPMSKPTEGAMGSATKVSGGKVTIPFAGAPKPGKMVKKSK*
Ga0007798_100634562	3300004775	Freshwater	MKKGTQAAAPMSKPTEGAMGSATKVSGGKVTIPFAGTPKPGKMVKKSK*
Ga0007796_100025302	3300004804	Freshwater	MRKGTHAPASMAKPVEGKKEGDKVQGGKVMEPFAGAAKPGKKVKKG*
Ga0068877_104588602	3300005525	Freshwater Lake	MKKGTQAPAPMSKPVEGSKAGDKVTGGKVYQPFAGTPKPGKKVSK*
Ga0075470_100494012	3300006030	Aqueous	MKKGTQAPAPMSKPVEGKKGGDKVQGGKVMAPFAGAAKPGKKVKKG*
Ga0070749_100007492	3300006802	Aqueous	MKKGTQAPAPMSKPVEGKKEGDKVQGGKVMAPFAGAAKPGKKVKKG*
Ga0070749_104507422	3300006802	Aqueous	MRRGTQAPASMSKPVEGSKAGSVVTGGKVMAPFAGAAKPGKKVKK*
Ga0075467_106542563	3300006803	Aqueous	MKKGTQAAAPMSKPTEGAMGAQTKVSGGKVTIPFAGAPKPGKMVKKSK*
Ga0075473_102992873	3300006875	Aqueous	RRGIKKRRCNMKKGTQAPAPMSKPVEGKREGDKVQGGKVMAPFAGAAKPGKKVKKG*
Ga0110929_100221312	3300008072	Water Bodies	MRKGTQAPAPMSKPKEGAMGETTKVSGGKVMAPYAGAAKPGKKVKK*
Ga0105105_102016103	3300009009	Freshwater Sediment	MKKGTHAPGTMAKPTEGAMGAITKVTGGKVEQPFAGKAKPGKKVKK*
Ga0105098_100932462	3300009081	Freshwater Sediment	MKKGTQAPASMSKPVEGSKAGSVVTGGKVMVPFAGTPKPGKKVSK*
Ga0105099_100123013	3300009082	Freshwater Sediment	MKKGTQAPASMSKPVEGSKAGSVVTGGKVMAPFAGTPKPGTMVKKKK*
Ga0114962_100020586	3300009151	Freshwater Lake	MNKGTQAPATYKKPDEGSKEGSVVTGGKVFQPFAGAAKPGKKVKK*
Ga0114962_100040658	3300009151	Freshwater Lake	MNKGSQAPAPMAKPIHGAAGAGAKVTGGDVKMPFAGAPKPGKAVKK*
Ga0114962_100044394	3300009151	Freshwater Lake	MKKGTHAPAPMSKPVEGKKAGDKVSGGKVMAPFAGAAKPGNKVKKG*
Ga0114962_101098004	3300009151	Freshwater Lake	MNKGSQAPAPMSKPIHGAAGAGAKVKGGDVKMPFAGAAKPGKMVKKGK*
Ga0114962_101631291	3300009151	Freshwater Lake	MNKGSQAPAPFAKPIHGAAGAGAKVTGGDVKMPFAGAPKPGKAVKK*
Ga0114975_101240252	3300009164	Freshwater Lake	MKKGTQAPAPMSKPVEGSKAGDKVSGGKVYQPFAGAAKPGKKVKK*
Ga0105097_101077243	3300009169	Freshwater Sediment	MNKGSQAPAPMSKPIHGTAGAGAKVKGGKVEMPFAGAAKPGKKVKK*
Ga0114979_106573922	3300009180	Freshwater Lake	MKKGTQAPASMSKPTEGAMGATTKVVGGKQMQPFAGAPKPGKKVKK*
Ga0114959_100046175	3300009182	Freshwater Lake	MKKGTHAPASMSKPVEGKKAGDKVSGGKVMAPFAGAAKPGNKVKKG*
Ga0114974_100024186	3300009183	Freshwater Lake	MNKGSQAPAPMSKPIHGAAGAGAKVTGGDVKMPFAGAPKPGKKVKK*
Ga0114974_100346064	3300009183	Freshwater Lake	MNKGSQAPAPMSKPIHGASGAGAKVTGGDVKMPFAGAAKPGKMVKKGK*
Ga0114976_103919162	3300009184	Freshwater Lake	MKKGTQAPASMSKPTEGAMGATTKVVGGKQMQPFAGAPKPGKPVKK*
Ga0114976_107094482	3300009184	Freshwater Lake	MNKGSQAPAPMAKPIHGAAGAGAKVTGGKVEMPFAGAAKPGKKVKK*
Ga0127391_10004896	3300009450	Meromictic Pond	MNKGSQAPAPMAKPIHGASGAGAKVTGGKVEMPFAGAAKPGKSVKK*
Ga0114964_100357712	3300010157	Freshwater Lake	MKKGTQAPAPFSKPVEGSKEGSVQPAGKKLLPFAGAPKPGKKVKK*
Ga0129333_110204242	3300010354	Freshwater To Marine Saline Gradient	MKKGTHAPAPMSKPVEGKKGGDKVQGGKVMAPFAGAAKPGKKVKKGK*
Ga0136551_10110412	3300010388	Pond Fresh Water	MRKGTHAPASMAKPTEGAMGSAVKVTGGKVELPFAGAAKPGKKVKK*
Ga0133913_101021426	3300010885	Freshwater Lake	MNKGSQAPAPMSKPVHGAAGAGAKVTGGDVKMPFAGAAKPGKMVKKGK*
Ga0133913_102767786	3300010885	Freshwater Lake	MKKGTQAPAPFSKPVEGSKDGSVQPAGKKLLPFAGAPKPGKKVKK*
Ga0133913_107472783	3300010885	Freshwater Lake	MNKGTQAPASMSKPTEGAMGATTKVSGGKVMAPFAGTPKPGKKVKK*
Ga0133913_111896932	3300010885	Freshwater Lake	MKKGTQAPASMSKPVEGSKAGSVVTDGKVTIPFAGAPKPGKMVKK*
Ga0151516_1026240	3300011116	Freshwater	MNKGSQAPAPMSKPIHGASGAGAKVTGGDVKQPFAGAAKPGKKVKK*
Ga0153698_148318	3300011335	Freshwater	MKKGTQAPASMSKPTQGAMGSDTKVAGGKVTIPFAGAPKPGKKVKK*
Ga0120086_1003134	3300011738	Mine Pit Pond	MKKGTQAPASMSKPVEGSKAGSVVTGGKVMAPFAGAAKPGKKVKK*
Ga0157138_10160323	3300012352	Freshwater	MKKGTHAPASMAKPTEGAMGSTTKVTGGKVEQPFAGKAKPGKKVKK*
Ga0157210_10046484	3300012665	Freshwater	MNKGSQAPAPYSKPTEGAMGATVKVTGGKVTIPFAGAAKPGKAVKK*
Ga0136641_10147482	3300013286	Freshwater	MNKGTQAPASMIKPIHGTAGAGAKVTGGEVKQPFAGAPKPGKMVKK*
Ga0134314_1024292	3300014711	Surface Water	MKKGTQAPAPMSKPVEGKKTGDKVSGGKVMEPFMGAAKPGKKVKKG*
Ga0134315_10013312	3300014962	Surface Water	MRKGTSPAAPMSKPVEGKKEGDKVQGGKVMAPFAGAAKPGKKVKKG*
Ga0134315_10128234	3300014962	Surface Water	MKKGTQAPAPMAKPVEGKKEGDKVQGGKVMQPFMGAAKPGKKVKKG*
Ga0134315_10204092	3300014962	Surface Water	MKKGTQAPAPMSKPVEGKKEGDKVSGGKVYQPFAGAAKPGKKVKKG*
Ga0134315_10288483	3300014962	Surface Water	MKKGTQAPAPMSKPVEGSKAGDKVTGGKVMAPFAGAAKPGKKVKK*
Ga0134315_10741602	3300014962	Surface Water	MKKGTQAPAPMAKPVEGKKEGDKVTGGKVYMGYAGAAKPGKKVKKG*
Ga0181344_10528623	3300017754	Freshwater Lake	MNKGTQAPASMSKPTEGAMGATTTVSGGKVMAPFAGAPKPGTMVKKSK
Ga0181344_11422462	3300017754	Freshwater Lake	MRRGTQAPASMSKPVEGSKAGSVVTGGKVMAPFAGAAKPGKKVKK
Ga0181355_10521663	3300017785	Freshwater Lake	MNKGTQAPASMSKPVEGSKAGSVVTGGKVMAPFAGAAKPGKKVKK
Ga0181355_10758393	3300017785	Freshwater Lake	MKKGTHAPAPMSKPVEGSKAGDKVTGGKVYQPFAGTPKPGKKVSK
Ga0213920_10022358	3300021438	Freshwater	MKKGTQAPAPMSKPVEGSKAGDKVSGGKVMAPFAGTAKPGTKVKK
Ga0213920_10146404	3300021438	Freshwater	MKTGTQAPAPMSKPTQGAMGSATKVTGGKVTIPFAGTPKPGKMVKKSK
Ga0213920_10226313	3300021438	Freshwater	MKKGTQAPAPMSKPVEGSKAGDKVSGGKVYIPFAGTPKPGKKVKK
Ga0213920_10260902	3300021438	Freshwater	MKKGTQAPAPMSKPVEGSKAGDKVSGGKVMAPFAGAAKPGKKVKK
Ga0194048_101104512	3300021519	Anoxic Zone Freshwater	MKKGTQAAAPMSKPTEGAMGAQTKVSGGKVTIPFAGAPKPGKMVKKSK
Ga0213921_10193684	3300021952	Freshwater	MKKGTQAAAPMSKPTQGAMGSATKVTGGKVTIPFAGTPKPGKMVKKSK
Ga0213922_10484433	3300021956	Freshwater	MRKGTHAPASMAMPVEGKKEGDKVQGGKVMEPFAGAAKPGKKVKKG
Ga0228703_10373964	3300022747	Freshwater	MRKGTQAPASMAKPVEGKKEGDKVQGGKVMAPFAGAAKPGKKVKKG
Ga0214917_100020565	3300022752	Freshwater	MRKGTHAPASMAKPVEGKKEGDKVQGGKVMEPFAGAAKPGKKVKKG
Ga0214921_101916833	3300023174	Freshwater	MKKGTQAPASMSKPTEGAMGATTKVVGGKQMQPFAGAPKPGKKVKK
Ga0214919_100063617	3300023184	Freshwater	MKKGTQAPASFSKPTEGAMGSTTKVSGGKVTIPFAGAPKPGKMVKKSK
Ga0255147_10003444	3300024289	Freshwater	MKKGTQAPAPMSKPVEGKKSGDKVQGGKVMAPFAGAAKPGKKVKKG
Ga0255175_11016863	3300024509	Freshwater	KKGTQAPAPMSKPVEGKKSGDKVQGGKVMAPFAGAAKPGKKVKKG
Ga0255288_10774222	3300024561	Freshwater	MKKGTQAPAPMSKPVEGKREGDKVQGGKVMAPFAGTAKPGKK
Ga0256337_11812312	3300024573	Freshwater	MKKGTQAPAPMSKPVEGKKSGDKVQGGKVMAPFAGAAKPGKKV
Ga0208613_10115834	3300025616	Freshwater	MKKGTQAAAPMSKPTEGAMGSATKVSGGKVTIPFAGAPKPGKMVKKSK
Ga0255289_11619031	3300026571	Freshwater	MKKGTQAPAPMSKPVEGKKSGDKVQGGKVMAPFAGAAKPGKKVK
Ga0209704_10938812	3300027693	Freshwater Sediment	MNKGTQAPASMSKPVEGSKAGSVVTGGKVMVPFAGTPKPGKKVKK
Ga0209188_100066312	3300027708	Freshwater Lake	MNKGSQAPAPMSKPIHGAAGAGAKVKGGDVKMPFAGAAKPGKMVKKGK
Ga0209188_10016516	3300027708	Freshwater Lake	MNKGTQAPATYKKPDEGSKEGSVVTGGKVFQPFAGAAKPGKKVKK
Ga0209188_10088434	3300027708	Freshwater Lake	MKKGTHAPASMSKPVEGKKAGDKVSGGKVMAPFAGAAKPGNKVKKG
Ga0209188_10538004	3300027708	Freshwater Lake	MNKGSQAPAPFAKPIHGAAGAGAKVTGGDVKMPFAGAPKPGKAVKK
Ga0209499_13285911	3300027712	Freshwater Lake	MNKGSQAPAPMAKPIHGAAGAGAKVTGGDVKMPFAGAPKPGKAVKK
Ga0209087_10016717	3300027734	Freshwater Lake	MNKGSQAPAPMSKPIHGASGAGAKVTGGDVKMPFAGAAKPGKMVKKSK
Ga0209087_10071435	3300027734	Freshwater Lake	MNKGSQAPAPMSKPIHGASGAGAKVTGGDVKMPFAGAAKPGKMVKKGK
Ga0209084_10095802	3300027749	Freshwater Lake	MNKGSQAPAPMSKPIHGAAGAGAKVTGGKVEMPFAGAAKPGKKVKK
Ga0209296_100119724	3300027759	Freshwater Lake	MNKGSQAPAPMSKPIHGAAGAGAKVTGGDVKMPFAGAPKPGKKVKK
Ga0209287_100134962	3300027792	Freshwater Sediment	MKKGTQAPAPMSKPVEGSKAGDKVTGGKVYQPFAGTPKPGKKVSK
Ga0209287_100252384	3300027792	Freshwater Sediment	MKKGTQAPASMSKPVEGSKAGSVVTGGKVMAPFAGTPKPGTMVKKKK
Ga0209230_102705992	3300027836	Freshwater And Sediment	MKKGTHAPASMSKPTEGAMGATTKVAGGKVEQPYTAAARPGKKVKK
Ga0209668_109773202	3300027899	Freshwater Lake Sediment	MKKGTQAPAPMSKPVEGKKGGDKVQGGKVMAPFAGTAKPGKKVKKG
Ga0209191_10736893	3300027969	Freshwater Lake	MKKGTQAPAPMSKPVEGSKAGDKVSGGKVYQPFAGAAKPGKKVKK
Ga0247723_10011296	3300028025	Deep Subsurface Sediment	MKKGTQAPAPMSKPVEGSKAGDKVTGGKVYQPYAGTPRPGKKVSK
Ga0311366_116004332	3300030943	Fen	MNKGSQAPAPMSKPIHGAAGAGAKVTGGDVKMPFAGAAKP
Ga0307379_111598852	3300031565	Soil	MNKGSQAPAPMAKPIHGTAGAGSKVTGGDVKQPFAGAAKPGKKVKK
Ga0307376_109975552	3300031578	Soil	MKKGTHAPAPMSKPVEGSKAGDKVTGGKVYQPFAGAAKPGKKVSK
Ga0315909_104229181	3300031857	Freshwater	KKGTQAPASMSKPVEGSKAGSVVTGGKVMAPFAGTPKPGTMVKKKK
Ga0302322_1039994022	3300031902	Fen	MNKGSQAAAPMSKPVHGAAGAGAKVKGGDVKMPFAGAAKPGKMVKKSK
Ga0334996_0281891_484_621	3300033994	Freshwater	MKKGTQAPASMSKPVEGSKAGSVVTGGKVMAPFAGAPKPGKSVKK
Ga0334987_0390729_107_247	3300034061	Freshwater	MKKGTQAPAPMSKPIHGTAGAGAKVTGGDVKQPYAGAAKPGKKVKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083438

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences