3300011391: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT163_2

Overview

Basic Information

• IMG/M Taxon OID: 3300011391
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118068 | Gp0155848 | Ga0137331
• Sample Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT163_2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 74356556
• Sequencing Scaffolds: 38
• Novel Protein Genes: 39
• Associated Families: 39

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_42_7	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales	1
All Organisms → cellular organisms → Bacteria	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4
Not Available	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_40	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Sediment Microbial Communities From The East River, Co, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → flood plain → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9226
  • Long. (^o): -106.9507
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004605	Metagenome / Metatranscriptome	431	N
F009467	Metagenome	317	Y
F011513	Metagenome / Metatranscriptome	290	Y
F016290	Metagenome	248	Y
F021563	Metagenome / Metatranscriptome	218	Y
F024820	Metagenome / Metatranscriptome	204	Y
F026597	Metagenome	197	Y
F027192	Metagenome / Metatranscriptome	195	Y
F028858	Metagenome / Metatranscriptome	190	Y
F029138	Metagenome / Metatranscriptome	189	Y
F031175	Metagenome / Metatranscriptome	183	Y
F031935	Metagenome / Metatranscriptome	181	Y
F034985	Metagenome / Metatranscriptome	173	Y
F037999	Metagenome / Metatranscriptome	167	Y
F041284	Metagenome / Metatranscriptome	160	Y
F043160	Metagenome / Metatranscriptome	157	N
F044511	Metagenome / Metatranscriptome	154	Y
F045136	Metagenome	153	Y
F047155	Metagenome / Metatranscriptome	150	Y
F048673	Metagenome / Metatranscriptome	148	Y
F056248	Metagenome	137	N
F058543	Metagenome	135	N
F059923	Metagenome	133	Y
F066277	Metagenome	127	Y
F066903	Metagenome	126	Y
F069002	Metagenome / Metatranscriptome	124	Y
F069627	Metagenome / Metatranscriptome	123	Y
F070913	Metagenome	122	N
F074797	Metagenome / Metatranscriptome	119	Y
F076224	Metagenome	118	Y
F082880	Metagenome / Metatranscriptome	113	Y
F084884	Metagenome / Metatranscriptome	112	Y
F087945	Metagenome	110	N
F089704	Metagenome / Metatranscriptome	108	N
F098452	Metagenome / Metatranscriptome	103	Y
F098853	Metagenome / Metatranscriptome	103	Y
F099499	Metagenome / Metatranscriptome	103	N
F100587	Metagenome	102	Y
F105011	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0137331_1000007	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_42_7	8674
Ga0137331_1000151	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales	2618
Ga0137331_1001507	All Organisms → cellular organisms → Bacteria	1468
Ga0137331_1005417	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1021
Ga0137331_1006317	All Organisms → cellular organisms → Bacteria	977
Ga0137331_1008686	All Organisms → cellular organisms → Bacteria → FCB group	891
Ga0137331_1008791	All Organisms → cellular organisms → Bacteria	888
Ga0137331_1008822	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887
Ga0137331_1008859	Not Available	886
Ga0137331_1009155	Not Available	876
Ga0137331_1010802	All Organisms → cellular organisms → Bacteria	833
Ga0137331_1011012	All Organisms → cellular organisms → Bacteria	828
Ga0137331_1012410	Not Available	797
Ga0137331_1012804	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	789
Ga0137331_1013252	All Organisms → cellular organisms → Bacteria → Proteobacteria	780
Ga0137331_1013265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_40	780
Ga0137331_1014172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	764
Ga0137331_1015146	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	748
Ga0137331_1017349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	715
Ga0137331_1017783	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	709
Ga0137331_1020926	Not Available	673
Ga0137331_1021779	Not Available	663
Ga0137331_1026978	All Organisms → cellular organisms → Bacteria	611
Ga0137331_1027782	Not Available	604
Ga0137331_1028573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598
Ga0137331_1028699	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597
Ga0137331_1030327	All Organisms → cellular organisms → Bacteria	583
Ga0137331_1030731	Not Available	580
Ga0137331_1034284	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	555
Ga0137331_1035496	Not Available	547
Ga0137331_1036202	Not Available	542
Ga0137331_1037609	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534
Ga0137331_1039614	Not Available	523
Ga0137331_1041372	All Organisms → cellular organisms → Bacteria	513
Ga0137331_1041651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	512
Ga0137331_1042025	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	510
Ga0137331_1042908	Not Available	506
Ga0137331_1044225	All Organisms → cellular organisms → Bacteria	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0137331_1000007	Ga0137331_100000710	F069002	MNYAELSQAISEWSNKDSIDKVLPTIIRFGQRDLEDNLRIRPMEYHPTTAIIAAGESTLALPSDFLELIYLVLIKDNVRYPVDGRETARVLYTERPSVTETGTPCVVARVADDLVFDVLTDVAYTRDWCYYRRLPVLVSSPSGTPAGNSNWWSENAEEAFLMSCLNKLSLYVSGIPEGDKKKWADGNLLAREALKFKEARETTGGSVLRSSNWK*
Ga0137331_1000151	Ga0137331_10001514	F066277	MDRKKFVAMFSTSILGVALLKANPMNLFVSKKSLKTENSVNVKINPNAVNREKSGKKNG*
Ga0137331_1001507	Ga0137331_10015072	F069627	MDADAVPIYMKISEKVVHLRRLGMPYTSIAERIGVNLWMAKRAARWAKTHNK*
Ga0137331_1005417	Ga0137331_10054172	F087945	MGGVPAEIIGDPTAEQPCDGWNPSDHPEFREFLDHVAEILAHEYVQRMRETADPKDIEAWEKGGR*
Ga0137331_1006317	Ga0137331_10063172	F058543	METVTILASINEKKKAEFFQTMESLTGLVESKCNDLDIRVKDDNRLIIKITFDGKDQMEKNFYTGEFNILKGTVKSLCENVIIKLNESLLNNN*
Ga0137331_1008686	Ga0137331_10086861	F076224	RIVPEGISEAEKLVVVNAIVKLKNTSGDQYIFVTPDSIFEDNYRFDPVLIHKELKWTEEQIKFKEENVKEFTLNIKYDSTFKYYADSKNGHPFTIVIDSNICRVDVPDFTIPEIPIPEIAAIDPLIEQATNNIHFYAYKIPKIEKSESEIKIEYYNDDSVYSYVVNYNILDIDSIDQANSGTDLYNLDRLKKARPLDDTMLIKYQFDRDYYNRYYSDDEFKKQMEELQKELQQLSKDVKNQKIRVHSEVTKSRRK*
Ga0137331_1008791	Ga0137331_10087912	F043160	MAKKNLDNLKNSHLGGGLSNLIPEMNEDHESKKTKAAYKDVPKTFLMVLEDYEYLQTYSRYMAFHSNSKYPLKRSLSDAIKLLRESHPEIQ*
Ga0137331_1008822	Ga0137331_10088221	F034985	LTPGAAAAAEVWSRGFLPLRARSEGSYRLRPAFPGTAVILGDDTYEALSETELPEDGLVVYRLRAWPEGEVIRDRVVYGPAFVRAAQADRQRARVRDKARRWRFLLYPVVGLLPEEEQERQCDRLGLYAVTATLVSGLVESLGV
Ga0137331_1008859	Ga0137331_10088592	F070913	FLFGIQLAAGESSVAFEYKGLPGQMTIEQARDYGEHSLACETDTIVSALVHCHDHSTDYLGKPAILKLEFIDGNLAMLVLLVPAEHFGEVSRHILRRYGKPRRHGTETDGPKPYEHMEWTLADGELVLDEWIARFNPVDQRFATVLGLRFLPAALEKRRAEVAWIRHRASEERNQADM*
Ga0137331_1009155	Ga0137331_10091551	F074797	MNESEPSMRCRETILSVKTTGSLRLGEECSGYLFTGYMADVIKEA*
Ga0137331_1010802	Ga0137331_10108022	F009467	MKLVHESVIERGEIFEALGAGFFETFEEEDLCARVYLFQEMAQLSHGVTAGWDTKDIVHEALDELLSEILTGEVALREFS*
Ga0137331_1011012	Ga0137331_10110121	F026597	MFERHRLIVSVSLALLIITVVGVTVSSFSPSKKSEYFRELKDIYNTVNLYDKEIMSCESAKNTLVDLNYWNDFIPRYDAVSEEDHDVLLVQNQVRELAVKHQVRSLPEIRKYYGEYLSDRLSGLDYKVTILNDERNKIVVFTHDSFTKRSSLEKFHNTVANDLRILGFKQIRYKWYELEKLADEKYIHYNFSDLADNEVRHFSISAIKN*
Ga0137331_1012410	Ga0137331_10124101	F044511	TKRAPDAGDSGAIPSIFLRLSIFPVGRRPAARPSAGNANR*
Ga0137331_1012804	Ga0137331_10128041	F021563	MEDLKLLLIDRLKSKGMDSALIPAFLKALTSLISSEPDIDPAVANQKMHSLGWDEVAIDYHCLQIAISCHEADTK*
Ga0137331_1013252	Ga0137331_10132522	F098853	MELTFARYLEDEGLREELERRAHRERAEQMHLYFAQAAQILHMPRVPEPRTDACA*
Ga0137331_1013265	Ga0137331_10132652	F089704	MTDMDVPARNNYQIKIVYQHPSPTVSSGKVVLATDIVTTRTAVVDIAARLQKIFPKPEHLVFVHLLERSGQPRQVAWETLDEPGNGPV*
Ga0137331_1014172	Ga0137331_10141722	F048673	MRTLALLLILVAIAASQPNHWLSVVMASIAHLLGR*
Ga0137331_1015146	Ga0137331_10151462	F059923	MRRNKSEVDYNCDIDEFIRLAQRWSNLHQRLLNTLIRLPEEVYQFTLQKISFHAGQSQTIQIKEIKKPYMIILKRTDSESLIAHEIAHAYLSYTKNQWEEQEEQADELRKKWGFKKKQLCATYPKGCNNCFNPHCPESKAMKLKL*
Ga0137331_1017349	Ga0137331_10173491	F047155	MSEETTQKGLAPKKHLSKNASIGVMVAGGLMILIPWFFFPAEQGSTLQITKTIGGVAGFAILCAGAYFRP
Ga0137331_1017783	Ga0137331_10177831	F027192	MNRTIFILALLLVVGLSRASAQSEAEALVTASVESELVLVNVDGDWGLFSPGQTYTVTPSGFKEPPGPGEGAGIVVDAIGFEIDGNPGSDVLVSLILPAAFNSDDENGNLPLGNWTYGWNYDNDPGVAFSDAGPVTGSAVVVTIGGGAASGLFLGATVTVPTTAFAG
Ga0137331_1020926	Ga0137331_10209261	F105011	MVLDLEIADIVDAHGVELADVVAAYERKMDAMRVKLKKIRKYAISQEAWYHYAVGSIVTLVAILIAFVVGFKFFR*
Ga0137331_1021779	Ga0137331_10217791	F041284	MSLLPTLAVVTLAWFVVRAISVRVVWRESGVRRLDDETA*
Ga0137331_1026978	Ga0137331_10269781	F031175	EGKLFHHLFCRRSVSHPNQLQVLLTRLNSGQGSLAPCRLDRQIDATMSPSDAAIRPHPRLWLPARGCPALPARAPNRASQVPSGSFRARCLLSPRGVRSVRLIEASRPIRASSYPADWPLPISCNEAEPSSRDATARALTFPSFNGQDRSHPLKGRLHDSRPFVMVNTFQFTRTTKLAWRFPNYTKTKEERMSSRRSWGGDPI
Ga0137331_1027782	Ga0137331_10277821	F004605	MSLNSRALLLVLCLLGATEVVGQEAVTALDRTLSKTHMRQDTTYVAIADAPVQAFAPTTIQCGKQSCTVRVEVSSQFFNVTSGNAVRLHVKADGAPFPVTGFEIDGGINRPVAHLTTVSSLKTDLSPGPHTISVDFDMRS
Ga0137331_1028573	Ga0137331_10285731	F016290	VSRGKRAPGDPKKPCCMVSEILEEAGIDRERARQIRHQVLEGIILMCQWQLQRMEQDRKAPAPGRRGRKVEVE*
Ga0137331_1028699	Ga0137331_10286991	F029138	MVRTPLLLALLPAAIQAAPVRHFDVTAAFAPAKKAGGSAAVVVTFRPLDPDVRVNETPAPRLRLDLTQVVLVDKQAPASSQVPDYGPLTAKYLDITRPVSFPVGIAPTAPKGAHEVKASVVYFYCSTREAWCRRGTADVLIPAINVP*
Ga0137331_1030327	Ga0137331_10303271	F024820	GPAMESTPIDTSPPKRPILVRPASIRYMGFECTSAGRAYRLRVDGVGEPRLFTVTILTAAFDTRKARFQDAPELCFARLQRELATNAELADGLQFVITPAEIDEYRDAQLRRSPDRKTRTLRTWP*
Ga0137331_1030731	Ga0137331_10307312	F045136	MRKDAVYRMRVPKRTLAAIKKVAASRGEDASEWGRAIIETELRRDLASLQLRDQLLGAKPGKLAETDAMDLVLEAQRATRTR*
Ga0137331_1034284	Ga0137331_10342841	F082880	MNAKKLERAIALGKRVEHFFVALVGADGFPYVNSARQIEQVAENQFAIEEWICPLTVKHLSENPKMAVLIWDPASDDGYEILGEVLMFESQAFLNGFAPEVEEDAHLPQVKRKLIIRAEKITAFSHALRCDDIQQLAEAKGTAKLFTGEDSGSEVPVCGFAPEWAKHARFGRSDEPCDDG
Ga0137331_1035496	Ga0137331_10354961	F056248	FISYVAAPEFAPGSEPPTDFPVITYDGDREKPDAKLYRVMPWSDWQSYAERNPGASLLLPEPSRAVQVGNEDQASFVVTEGGDSRQTVELTWRSGSEERRARYIAQARSLEPRSLHTINTRTFLLAALAGFGAGMLIGRFMRRRWLPRPGDIVSLPPTIK*
Ga0137331_1036202	Ga0137331_10362021	F098452	MKLTKTDILEYIVAFIGIVGVLAYLHATAEPNQTVAAAQAAPMMFEAGWTIRADTAHSAVRFPEMLLADARG*
Ga0137331_1037609	Ga0137331_10376091	F099499	MSLITILMFLAIAASVCLVVHLLKRDKVPLWVAVALLCLIELLRTLPLGRY*
Ga0137331_1039614	Ga0137331_10396142	F031935	MMSDSTKRIQAQESRGFPPVGSAHRSLMSAPGWFETILHFKGFGGGVPPNTETAAVNPRAGIE*
Ga0137331_1041372	Ga0137331_10413721	F084884	VHPTLGSLARFQAFFYASAFSQSDGVPPPDPARVTQTVGWQVKE
Ga0137331_1041651	Ga0137331_10416511	F011513	AAHSASVSSIDAARVQDLRIMGAHGFRSLPIKQL*
Ga0137331_1042025	Ga0137331_10420252	F066903	MKRRFRQKEDLEPKNDPKKDKGLSDDIALENVNIDDVIGEIETHLETPEDTPEEE*
Ga0137331_1042908	Ga0137331_10429081	F100587	LEVKLRQVFALAREGLKTEAQALAAAFGQPVPGFDFTKDGMKAFVNAPRFQFYGGELQALLGNDAAAREHWRRAAAGRDFRQTAFAYRAAQRLGEASEAEWRPRLETALAEADLYLFRGGHYPAGATCARGMLLRALGRIPEGDEALRQVFILPDKGMPHHIARLALQ
Ga0137331_1044225	Ga0137331_10442251	F028858	MRVLFFVEGFTDIRFLVGLSEVCDLTVAVPSVAYRSSGLQERVAASGARLRVEEIAGGRAAYQVRSLGYLWKHAAQFDVILAQEMLRGALNATIVGALKGVPVVTYMGISPIE
Ga0137331_1044230	Ga0137331_10442301	F037999	LENVLSPEAAPDLFVFDKFNKMPMAKRVKLMTKNPAELIDHMRKESHVVWKAVEAFIRRENDEGRDVLIEGVAVLPELISQLEDIPHRVVFIGNQGENHKENIKKFAEENEHDWMRDVSDQYIGAFAMFVKRMSAYIEQEAKKYGFEYIEMDKELFGNVAEEVMKS