3300011241: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 11 - S13.2.50.a - transect 2, age 50 years, surface depth).

Overview

Basic Information

• IMG/M Taxon OID: 3300011241
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121480 | Gp0155464 | Ga0137476
• Sample Name: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 11 - S13.2.50.a - transect 2, age 50 years, surface depth).
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bristol
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29749304
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga fabula	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
Not Available	4
All Organisms → cellular organisms → Bacteria → Nitrospirae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter palustris	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes Of Arctic Soils
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → glacial feature → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Midre Lovenbreen, Svalbard, Norway
• Coordinates
  • Lat. (^o): 78.92166667
  • Long. (^o): 12.07666667
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001578	Metagenome / Metatranscriptome	669	Y
F005682	Metagenome / Metatranscriptome	393	Y
F028177	Metagenome / Metatranscriptome	192	Y
F061640	Metagenome	131	Y
F061932	Metagenome	131	Y
F062663	Metagenome	130	Y
F063781	Metagenome / Metatranscriptome	129	Y
F064869	Metagenome	128	Y
F068282	Metagenome / Metatranscriptome	125	Y
F072619	Metagenome / Metatranscriptome	121	Y
F081526	Metagenome	114	Y
F092375	Metagenome / Metatranscriptome	107	Y
F102696	Metagenome / Metatranscriptome	101	Y
F103463	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0137476_100006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	5240
Ga0137476_100285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2064
Ga0137476_100643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga fabula	1659
Ga0137476_101562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1252
Ga0137476_101577	Not Available	1247
Ga0137476_102978	Not Available	985
Ga0137476_103033	All Organisms → cellular organisms → Bacteria → Nitrospirae	975
Ga0137476_103692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	897
Ga0137476_103916	Not Available	877
Ga0137476_105046	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	786
Ga0137476_105604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter palustris	746
Ga0137476_106018	Not Available	720
Ga0137476_106803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	678
Ga0137476_106826	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	677

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0137476_100006	Ga0137476_1000065	F063781	MDVSVEIHCETCGSANYSLPEGNGDGGPIRCNDCGAPQGTIGELRAALLEQVLDHSAEALRRDLDRLLEAKL*
Ga0137476_100285	Ga0137476_1002852	F081526	MSYACPWCGKGRFSFWDKQSLGPTRTLNCPDCKRAVGVCWNRAQLAAIPAVALGFLGLIAGKVLFLTWPAVFLGGWIGVTVGMLITAPLYHLYVPLVKDN*
Ga0137476_100643	Ga0137476_1006433	F064869	MANDDQNNLYEEWDVEVAKRIACAVTSYQANIPFETLWEQSVNQAEPVGTFWLSIAKRIREELPKKPK*
Ga0137476_101562	Ga0137476_1015622	F061640	MNRKSLLVMLMVLVVSACAPTAPSNPADRFAGTWSGTMSFTDDANRKEDIIVTIPEGCTVGSVCGDLNNTTVSCNWEMTLGAISGDVFEYKFSKTLSGECPALGGGTLTLQPDGTLMREHKTPDFTASGILTQK*
Ga0137476_101577	Ga0137476_1015772	F062663	MEVEMEVINQDRIYTPARSTSPVGQNQPSRGKVHACKASQRGYQQACDHLKRAERDLAETAAFIAAALTTVTAVQAVISLARDKLELSKEVLQLAFQGYVVVFILIFLLGALRIRWAIGRRTQAEKEIDQTKKGIFEFCELPQWPRPEK*
Ga0137476_102978	Ga0137476_1029781	F005682	MTYEYDFEMVKRAYAEMARRAREKDEVRRLPRNGLPQQPQRQDALERQRFPA*
Ga0137476_103033	Ga0137476_1030331	F072619	MFLAGVRLRENDHTRRIAVQEVAPSDRTDLALGKESRGRDGAKPLLHGPAIVMGVAKESLSTPATAEQESPEWRTLVLCSIRSQKNVQVVACRFRIAKVELYGLAFLNNVSDRNGSGLLIRSNEVPNEEVASLEMTAVFIDDDAQMQRAVRIPALGAPHGFKDIL
Ga0137476_103692	Ga0137476_1036921	F068282	DRIVAIVRGTVNSVAEAKELHNTAMTKTISKARKFGMLSHQAYFRMAAPGSPEALEFLGVDVWMSAEGLGDYYGDEDFLAGFNHIFTGEAADSVWVHPEGNWTEW*
Ga0137476_103916	Ga0137476_1039162	F102696	MNMGLGAKSLALFAVSVLFLILITLFEASLAGMSLTAEKILSALLLVVPAVIGIVLGVLGINRREANRWMAILGILLNALFALFQIFVISFAG*
Ga0137476_105046	Ga0137476_1050462	F061932	MLTGLLLRKKGKTKTLVVLFVVSIMLLVGGILILIK*
Ga0137476_105604	Ga0137476_1056041	F028177	LFLPWAWMARLVPMWALGISLALVPLAAMLALALVIKDLNADDGENPLVTDDPLKWRKRTRLFQQVVVGLDTMLERWDSASQANRKRLDTVTESVEEVIKLTEAAVNDISKNFRIVVAKAHEQTEAAMSLLQRDNEGRGVLSLPEFIQAYDSQLVNVTSHMTSFSAAADEMASHQKRVSEHAKVMEETIDGLRHMASQISRIALDGSVAMTSQTLNSRDFVDMTDRIRAISAEAHELTRKTRHGLDAI
Ga0137476_106018	Ga0137476_1060182	F001578	MEEIRQEVDAMGWDGDDLAGKMEEVFERQQEAAAARANRGTSSVEERAKSATFESLRLSRSRIMSQLANATSPSHRTMLESALKSINDEMAK*
Ga0137476_106803	Ga0137476_1068032	F092375	MNLQNIGSTRPKLYPPKALLSMGPMERRSPNLSDAELRYIVIQVIG*
Ga0137476_106826	Ga0137476_1068262	F103463	MPKDIFMNRKTATKILSFIIVSSFFLPLFEWHGFEMTGLNYILSSQIPSYKYFLLLAPFAALLIFFDTQDERNFFFNSKIFSWIPLFSLALISTMRLSNGNGENNFYNNETYFSTINFGFWIMLFFSILLVIVKDSKRLFYQYEKNERDFFH*