Metagenome Family F081526

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081526
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	99 residues
Representative Sequence	MYACPWCGKGRFSFWEKQSLGPTRTLSCASCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKVLFMTWPAVLLGGWLGVTLGMLFTAPLYHWYVPLVKETD
Number of Associated Samples	86
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.95 %
% of genes near scaffold ends (potentially truncated)	37.72 %
% of genes from short scaffolds (< 2000 bps)	85.09 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.614 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.158 % of family members)
Environment Ontology (ENVO)	Unclassified (46.491 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.860 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.75% β-sheet: 10.16% Coil/Unstructured: 46.09%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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SCOP family	SCOP domain	Representative PDB	TM-score
f.42.1.1: Mitochondrial carrier	d1okca_	1okc	0.54751
e.81.1.1: CRISPR associated protein CasA/Cse1	d4an8a_	4an8	0.54619
f.61.1.1: Multidrug and toxic compound extrusion (MATE) transporters	d5c6na_	5c6n	0.53962
f.18.1.1: F1F0 ATP synthase subunit A	d1c17m_	1c17	0.53752
a.119.1.0: automated matches	d3v98a2	3v98	0.53017

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF04357	TamB	34.21
PF13376	OmdA	10.53
PF00656	Peptidase_C14	9.65
PF00291	PALP	7.89
PF02867	Ribonuc_red_lgC	3.51
PF13193	AMP-binding_C	1.75
PF13545	HTH_Crp_2	0.88
PF08240	ADH_N	0.88
PF08818	DUF1801	0.88
PF00005	ABC_tran	0.88
PF00300	His_Phos_1	0.88
PF00583	Acetyltransf_1	0.88
PF01096	TFIIS_C	0.88
PF03610	EIIA-man	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG2911	Phospholipid transport to the outer membrane protein TamB	Cell wall/membrane/envelope biogenesis [M]	34.21
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	9.65
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	3.51
COG1594	DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS	Transcription [K]	0.88
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.88
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.61 %
Unclassified	root	N/A	4.39 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.61 %
Unclassified	root	N/A	4.39 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.61 %
Unclassified	root	N/A	4.39 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	92.11 %
Unclassified	root	N/A	4.39 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.75 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	83.33 %
Unclassified	root	N/A	4.39 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.88 %

Name	Rank	Taxonomy	Distribution
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	50.00 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	19.30 %
Unclassified	root	N/A	4.39 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	1.75 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.88 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.88 %

Name	Rank	Taxonomy	Distribution
Usitatibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae	50.00 %
Betaproteobacteria bacterium GR16-43	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	11.40 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.89 %
Unclassified	root	N/A	4.39 %
Lactobacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales	0.88 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.88 %
Zoogloeaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae	0.88 %
Actinobacteria bacterium HGW-Actinobacteria-2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium HGW-Actinobacteria-2	0.88 %

Name	Rank	Taxonomy	Distribution
Usitatibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter	50.00 %
Betaproteobacteria bacterium GR16-43	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	11.40 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.89 %
Unclassified	root	N/A	4.39 %
Thauera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	0.88 %
Lactobacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae	0.88 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.88 %
Actinobacteria bacterium HGW-Actinobacteria-2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium HGW-Actinobacteria-2	0.88 %

Name	Rank	Taxonomy	Distribution
Usitatibacter rugosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	50.00 %
Betaproteobacteria bacterium GR16-43	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	11.40 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.89 %
Unclassified	root	N/A	4.39 %
Weissella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Weissella	0.88 %
Thauera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	0.88 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.88 %
Actinobacteria bacterium HGW-Actinobacteria-2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium HGW-Actinobacteria-2	0.88 %

Name	Rank	Taxonomy	Distribution
Usitatibacter rugosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	50.00 %
Betaproteobacteria bacterium GR16-43	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	11.40 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.89 %
Unclassified	root	N/A	4.39 %
Weissella hellenica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Weissella → Weissella hellenica	0.88 %
Thauera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	0.88 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.88 %
Actinobacteria bacterium HGW-Actinobacteria-2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium HGW-Actinobacteria-2	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_101452899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	766	Open in IMG/M
3300000956\|JGI10216J12902_101824473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	1805	Open in IMG/M
3300000956\|JGI10216J12902_108465099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1750	Open in IMG/M
3300000956\|JGI10216J12902_115651979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	643	Open in IMG/M
3300003319\|soilL2_10206707	Not Available	1218	Open in IMG/M
3300004156\|Ga0062589_100321643	All Organisms → cellular organisms → Bacteria → Proteobacteria	1209	Open in IMG/M
3300004463\|Ga0063356_100434302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1705	Open in IMG/M
3300004463\|Ga0063356_100573492	All Organisms → cellular organisms → Bacteria → Proteobacteria	1516	Open in IMG/M
3300004463\|Ga0063356_100718855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1377	Open in IMG/M
3300005093\|Ga0062594_102496980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	567	Open in IMG/M
3300005290\|Ga0065712_10423156	All Organisms → cellular organisms → Bacteria → Proteobacteria	710	Open in IMG/M
3300005328\|Ga0070676_11410001	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300005341\|Ga0070691_10774296	Not Available	582	Open in IMG/M
3300005441\|Ga0070700_100129710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	1700	Open in IMG/M
3300005441\|Ga0070700_101212160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Weissella → Weissella hellenica	631	Open in IMG/M
3300005546\|Ga0070696_100408575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	1064	Open in IMG/M
3300005548\|Ga0070665_100193243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	2036	Open in IMG/M
3300005578\|Ga0068854_100572828	All Organisms → cellular organisms → Bacteria → Proteobacteria	961	Open in IMG/M
3300005578\|Ga0068854_101426765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	627	Open in IMG/M
3300005617\|Ga0068859_102490821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	570	Open in IMG/M
3300005719\|Ga0068861_101563231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	649	Open in IMG/M
3300005719\|Ga0068861_102283619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	543	Open in IMG/M
3300005834\|Ga0068851_11094040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	505	Open in IMG/M
3300005836\|Ga0074470_10139895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	1355	Open in IMG/M
3300005842\|Ga0068858_100003336	All Organisms → cellular organisms → Bacteria → Proteobacteria	15991	Open in IMG/M
3300005890\|Ga0075285_1064263	Not Available	508	Open in IMG/M
3300006058\|Ga0075432_10286780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	679	Open in IMG/M
3300006195\|Ga0075366_10702243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	628	Open in IMG/M
3300006844\|Ga0075428_100005442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	14150	Open in IMG/M
3300006876\|Ga0079217_11308772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	560	Open in IMG/M
3300006880\|Ga0075429_101262600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	644	Open in IMG/M
3300006894\|Ga0079215_10943191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	625	Open in IMG/M
3300007004\|Ga0079218_10129083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1802	Open in IMG/M
3300007004\|Ga0079218_10725270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	938	Open in IMG/M
3300007004\|Ga0079218_13343361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	543	Open in IMG/M
3300009100\|Ga0075418_10201934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2117	Open in IMG/M
3300009153\|Ga0105094_10845691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	539	Open in IMG/M
3300009553\|Ga0105249_11322754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	792	Open in IMG/M
3300009678\|Ga0105252_10499140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	561	Open in IMG/M
3300009873\|Ga0131077_10087778	All Organisms → cellular organisms → Bacteria → Proteobacteria	3868	Open in IMG/M
3300010375\|Ga0105239_13109971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	541	Open in IMG/M
3300010401\|Ga0134121_12072864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	603	Open in IMG/M
3300011241\|Ga0137476_100285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2064	Open in IMG/M
3300011416\|Ga0137422_1063924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	884	Open in IMG/M
3300012212\|Ga0150985_109081024	All Organisms → cellular organisms → Bacteria → Proteobacteria	1532	Open in IMG/M
3300012212\|Ga0150985_119225908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	596	Open in IMG/M
3300012893\|Ga0157284_10099134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	758	Open in IMG/M
3300012893\|Ga0157284_10328884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	510	Open in IMG/M
3300012915\|Ga0157302_10408199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	562	Open in IMG/M
3300012916\|Ga0157310_10352748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	596	Open in IMG/M
3300013307\|Ga0157372_13369503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	509	Open in IMG/M
3300014325\|Ga0163163_10521879	All Organisms → cellular organisms → Bacteria → Proteobacteria	1250	Open in IMG/M
3300014326\|Ga0157380_10019839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5016	Open in IMG/M
3300014876\|Ga0180064_1027670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	1099	Open in IMG/M
3300015063\|Ga0167649_117143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	601	Open in IMG/M
3300015084\|Ga0167654_1005845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2242	Open in IMG/M
3300015167\|Ga0167661_1003294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2847	Open in IMG/M
3300015200\|Ga0173480_10229581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	1000	Open in IMG/M
3300015201\|Ga0173478_10110075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1031	Open in IMG/M
3300015201\|Ga0173478_10620640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	565	Open in IMG/M
3300015360\|Ga0163144_10433021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	1542	Open in IMG/M
3300015372\|Ga0132256_101671080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	746	Open in IMG/M
3300015373\|Ga0132257_101773306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	792	Open in IMG/M
3300015374\|Ga0132255_105633555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	530	Open in IMG/M
3300017695\|Ga0180121_10104722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	1018	Open in IMG/M
3300018081\|Ga0184625_10084870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1623	Open in IMG/M
3300018476\|Ga0190274_10211244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	1718	Open in IMG/M
3300018476\|Ga0190274_10356075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1395	Open in IMG/M
3300018476\|Ga0190274_10607158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1121	Open in IMG/M
3300018476\|Ga0190274_11041855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	895	Open in IMG/M
3300018481\|Ga0190271_11064980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	932	Open in IMG/M
3300020027\|Ga0193752_1092096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	1251	Open in IMG/M
3300020186\|Ga0163153_10001161	All Organisms → cellular organisms → Bacteria → Proteobacteria	42506	Open in IMG/M
3300025899\|Ga0207642_10031039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	2234	Open in IMG/M
3300025899\|Ga0207642_10513898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium HGW-Actinobacteria-2	735	Open in IMG/M
3300025908\|Ga0207643_10606370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	705	Open in IMG/M
3300025911\|Ga0207654_10239892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	1211	Open in IMG/M
3300025918\|Ga0207662_10648822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	737	Open in IMG/M
3300025924\|Ga0207694_10172810	All Organisms → cellular organisms → Bacteria → Proteobacteria	1750	Open in IMG/M
3300025926\|Ga0207659_11166540	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300025927\|Ga0207687_10949391	Not Available	737	Open in IMG/M
3300025933\|Ga0207706_11634369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	521	Open in IMG/M
3300025934\|Ga0207686_10823668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	745	Open in IMG/M
3300026075\|Ga0207708_10113911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	2102	Open in IMG/M
3300027639\|Ga0209387_1009561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	1710	Open in IMG/M
3300027639\|Ga0209387_1140484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	625	Open in IMG/M
3300027907\|Ga0207428_10004845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	12695	Open in IMG/M
3300028379\|Ga0268266_10150923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	2094	Open in IMG/M
3300028587\|Ga0247828_10225955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	991	Open in IMG/M
3300028587\|Ga0247828_10455963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	750	Open in IMG/M
3300028587\|Ga0247828_10654629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	648	Open in IMG/M
3300028812\|Ga0247825_10496409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	868	Open in IMG/M
3300028812\|Ga0247825_11096767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	580	Open in IMG/M
3300028812\|Ga0247825_11472887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	500	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10120113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	713	Open in IMG/M
3300031455\|Ga0307505_10001710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	16862	Open in IMG/M
3300031455\|Ga0307505_10180834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	969	Open in IMG/M
3300031548\|Ga0307408_100162160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	1777	Open in IMG/M
3300031548\|Ga0307408_100216270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1561	Open in IMG/M
3300031548\|Ga0307408_101729362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	596	Open in IMG/M
3300031731\|Ga0307405_10386805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	1091	Open in IMG/M
3300031824\|Ga0307413_11549053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	587	Open in IMG/M
3300031852\|Ga0307410_10105617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2028	Open in IMG/M
3300031901\|Ga0307406_10578002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	923	Open in IMG/M
3300031911\|Ga0307412_10236924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	1409	Open in IMG/M
3300031911\|Ga0307412_11021343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	732	Open in IMG/M
3300031995\|Ga0307409_102575855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	537	Open in IMG/M
3300032002\|Ga0307416_101262921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	844	Open in IMG/M
3300032002\|Ga0307416_103099568	Not Available	556	Open in IMG/M
3300032005\|Ga0307411_10041958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	2916	Open in IMG/M
3300032075\|Ga0310890_11250285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	606	Open in IMG/M
3300032075\|Ga0310890_11801485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	509	Open in IMG/M
3300032126\|Ga0307415_100507421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	1056	Open in IMG/M
3300033550\|Ga0247829_11340158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter rugosus	592	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.63%
Host-Associated	Host-Associated	46.49%
Engineered	Engineered	0.88%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	46.49%
Terrestrial	Environmental → Terrestrial	44.74%
Aquatic	Environmental → Aquatic	7.89%
Wastewater	Engineered → Wastewater	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.79%
Sediment	Environmental → Aquatic → Sediment	4.39%
Freshwater	Environmental → Aquatic → Freshwater	3.51%
Roots	Host-Associated → Plants → Roots	1.75%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.40%
Loam	Environmental → Terrestrial → Soil → Loam	5.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.39%
Lake	Environmental → Aquatic → Freshwater → Lake	1.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.88%
Ice	Environmental → Aquatic → Freshwater → Ice	0.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.88%
Sand	Environmental → Terrestrial → Soil → Sand	0.88%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.88%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.40%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.39%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.51%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.88%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.88%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.88%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.88%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	12.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.14%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.39%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.51%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.51%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.63%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.63%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.88%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.88%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.88%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.88%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.88%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005890	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_104	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011241	Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 11 - S13.2.50.a - transect 2, age 50 years, surface depth).	Environmental	Open in IMG/M
3300011416	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT551_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014876	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D	Environmental	Open in IMG/M
3300015063	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3b, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300015084	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5a, rocky medial moraine)	Environmental	Open in IMG/M
3300015167	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015360	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017695	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020186	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1014528991	3300000956	Soil	MYACPWCTKGRFSFWDKQTLGPARNLTCRTCKRPVSVCWNRAQIAAIPAISLGFLGLIAGKVLFMTWPAVLLGGWLGVTLGMLFTAPLYHWYVPLVKETD*
JGI10216J12902_1018244731	3300000956	Soil	MYSCPWCNEGRFSFWDKQALGPARNLKCGTCKRPVSVSWNRAQLAAAPAVALGFLGLIAGKMLYMTWPAVFLGGWIGVTIGMLVTAPLYHYFVPLVKPDEEY*
JGI10216J12902_1084650992	3300000956	Soil	MAYACPWCSKASFSFWQKQALGPTRALECAHCKRKVSVCWNRAQLAAIPLLALAFLGIIAGKYAYGTWPAVLLGGWLGVTLGMLFTAPLYHYFVPLVRGTASASR*
JGI10216J12902_1156519791	3300000956	Soil	MSYACPWCGKGRFSFWDKQSLGPTRTLNCPDCKRAVGVCWNRAQLAAIPAVALGFLGLIAGKVLFLTWPAVFLGGWIGVTVGMLITAPLYHLYVPLVKEN*
soilL2_102067071	3300003319	Sugarcane Root And Bulk Soil	MTYACPWCGKASFSFWEKQSLGPSRALVCSHCKRNVSVCWNRAQLAAIPLLALAFLGLIAGKYVYGTWSAVLLGGWLGVTIGMLFTAPLYHFYVPLIRGTATAR*
Ga0062589_1003216432	3300004156	Soil	MSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWNRAQIAAIPVLAFGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHYYVPLTRGSATASR*
Ga0063356_1004343022	3300004463	Arabidopsis Thaliana Rhizosphere	MYSCPWCSKGRFSFWQKQSLGPARNLTCNQCKRPVSVCWNRAQVAAIPAIALGFLGLIAGKVLFMTWPAVFLGGWIGITAGMLITAPLYHWYVPLVKPTD*
Ga0063356_1005734921	3300004463	Arabidopsis Thaliana Rhizosphere	MYSCPWCSQGRFSFWEKQTLGPARTLTCNCCKRPVSVCWNRAQIAAVPTIALAFLGLIAGKILFMTWPAVLLGGWLGISAGMLITAPLYHWYVPLVKPTD*
Ga0063356_1007188551	3300004463	Arabidopsis Thaliana Rhizosphere	MYPCPWCSKASFSFWEKQSLGPSRNLVCRHCSRKVGVCWNRAQLAALPALALGFLGLIAGKAIFGTWPAVLLGGWLGVSFGMLVTASLYHLYVPLVKPQ*
Ga0062594_1024969801	3300005093	Soil	MSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWNRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHYYVPLTRGSATASR*
Ga0065712_104231562	3300005290	Miscanthus Rhizosphere	MSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWNRAQIAAIPVLAFGFLGLIAGKVLFGTWSAVLLFAWLGISGGML
Ga0070676_114100012	3300005328	Miscanthus Rhizosphere	PTRSLVCGHCKRKVGVDWNRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHYYVPLTRGSATASR*
Ga0070691_107742961	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWNRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHYYVPLTRGSATAS
Ga0070700_1001297102	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MYACPWCSKASFSFWEKQSLGPARALECSHCKRKVSVCWNRAQLAAIPVLALGFLGLIAGKYGFGTWPAVLLGGWLGVTIGMLVTAPLYHYFVPLVRGTAAATR*
Ga0070700_1012121601	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRYACPWCGQKAFSFWQKQSLGPHKSLPCPACRRKVSVDWMRAQIAAAPTLLLAFLGLIAGKILFMTWPAILLGGWLGVTLGFLITAPLYHAYVPLVKPS*
Ga0070696_1004085751	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MTYACPWCGKASFSFWQKQSLGPTRSLVCAHCKRKVGVDWSRAQIAAIPVLALGFLGLISGKVLFGTWPAVLLFAWLGITAGMCFTAPLYHYYVPLTRGTATASR*
Ga0070665_1001932432	3300005548	Switchgrass Rhizosphere	MYECPWCRKTSFSFWDKQTLGPTRKLSCGHCKKEVSVCWKSAQLAAIPVLALGFLGMLAGREAYGSWSAVMLFAWLGISFGMAFTAPLYHFYVPLVKPQ*
Ga0068854_1005728282	3300005578	Corn Rhizosphere	MTYACPWCGKASFSFWQKQSLGPTRSLVCAHCKRKVGVDWSRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHYYVPLTRGSATASR*
Ga0068854_1014267652	3300005578	Corn Rhizosphere	MSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWNRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFT
Ga0068859_1024908212	3300005617	Switchgrass Rhizosphere	MSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWSRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGITGGMLFTAP
Ga0068861_1015632311	3300005719	Switchgrass Rhizosphere	MYACPWCGKGRFSFWEKQSLGPTRTLSCASCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKILFMTWPAVFLGGWLGVTLGMLVTAPLYHLYVPLEKATD*
Ga0068861_1022836191	3300005719	Switchgrass Rhizosphere	MYACPWCEQTSFSFWQKQSLGPARNLTCQHCKKQVSVCWNRAQLAAVPVLALGFLGLIAGKMVFGTWSAVFLFAWLGVTAGMLITAPLYHWYVPLKKPD*
Ga0068851_110940401	3300005834	Corn Rhizosphere	MTYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWNRAQIAAIPVLALGFLGLISGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHYYVPLTRGSATASR*
Ga0074470_101398952	3300005836	Sediment (Intertidal)	MYSCPWCEKGKFSFWEKQSLGPARNLTCQQCKRPVSVCWNRAHLAAIPAIALGFLGLIAGKALFMTWPAILLGGWLGVTIGMLITAPLYHWYVPLQKPD*
Ga0068858_10000333615	3300005842	Switchgrass Rhizosphere	MSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWSRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGITGGMLFTAPLYHFYVPLTRGSATASR*
Ga0075285_10642631	3300005890	Rice Paddy Soil	MYACPWCAREKTFSFWQKQSLGPARSLTCPHCRRRVSVCWSRAQLAAIPALALGFLGLVAGKALFGTWPAVFLFGWLGVTLGMLVTAPLYHLYVPLVRGQTT*
Ga0075432_102867801	3300006058	Populus Rhizosphere	MYACPWCAKGRFSFWEKQSLGPTRTLSCASCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKILFMTWPAVFLGGWLGVTLGMLVTAPLYHLYVPLEKATD*
Ga0075366_107022432	3300006195	Populus Endosphere	MYACPWCEQTSFSFWQKQSLGPARNLTCQHCKKQVSVCWNRAQLAAVPVLALGFLGLIAGKMVFGTWSAVFLFAWLGVTAGMLITAPLYH
Ga0075428_10000544215	3300006844	Populus Rhizosphere	MYSCPWCSKGRFSFWEKQSLGPARNLTCNQCKRPVSVCWNRAQVAAIPAIALGFLGLIAGKVLFMTWPAVFLGGWIGITAGMLITAPLYHWYVPLVKPTD*
Ga0079217_113087721	3300006876	Agricultural Soil	MYACPWCGKGRFSFWDKQSLGPTRTLSCPDCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKVLFLTWPAVFLGGWVGVTLGMLITAPLYHLYVPLVKET*
Ga0075429_1012626002	3300006880	Populus Rhizosphere	MYACPWCEEGRFSFWQKQSLGPARNLTCTRCKRPVSVCWSRAQLAAIPAVALGFLGLIAGKVLFGTWPAVFLGGWLGVTIGMLI
Ga0079215_109431912	3300006894	Agricultural Soil	MYACPWCGKGRFSFWDKQSLGPTRSLSCPDCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKVLFLTWPAVFLGGWLGVTLGMLVTAPLYHLYVPLVKPTD*
Ga0079218_101290832	3300007004	Agricultural Soil	MYACPWCGKGRFSFWDKQSLGPTRALSCPDCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKVLFLTWPAVFLGGWVGVTLGMLITAPLYHLYVPLVKET*
Ga0079218_107252701	3300007004	Agricultural Soil	CPWCSKGRFSFWDKQALGPARNLKCGTCKRPVSVAWNRAQLAAAPAVALGFLGLIAGKMLYMTWPAVFLGGWIGITIGMLVTAPLYHYFVPLVKPDEEY*
Ga0079218_133433611	3300007004	Agricultural Soil	KQSLGPARKLTCSQCKRPVGVCWNRAQIAAIPAIALGFLGLIAGKVLFMTWPAVFLGGWIGITLGMLITAPLYHFYVPLVKPE*
Ga0075418_102019341	3300009100	Populus Rhizosphere	PMYSCPWCSKGRFSFWEKQSLGPARNLTCNQCKRPVSVCWNRAQVAAIPAIALGFLGLIAGKVLFMTWPAVFLGGWIGITAGMLITAPLYHWYVPLVKPTD*
Ga0105094_108456911	3300009153	Freshwater Sediment	MIYECPWCGEAGFSFWDKQSLGPSRTLSCPHCHRKVSVCWNRAQLAAIPVIALGFLGLVVGNVGFGTWSAVLLGGWLGVTLGMMFTAPLYHFWVPLLKG
Ga0105249_113227542	3300009553	Switchgrass Rhizosphere	MSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWSRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHFYVPLTRGSATASR*
Ga0105252_104991401	3300009678	Soil	KGRFSFWDKQSLGPARNLTCTQCKRPVSVCWSRAQIAAIPAIALGFLGLIAGKVLFLTWPAVFLGGWIGITIGMLITAPLYHWYVPLVKPTD*
Ga0131077_100877783	3300009873	Wastewater	MYSCPWCEKGRFSFWEKQSLGPARNLTCAHCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKSLFMTWPAILLGGWLGVTIGMLITAPLYHWYVPLKKPD*
Ga0105239_131099712	3300010375	Corn Rhizosphere	MTYACPWCGKASFSFWQKQSLGPTRSLVCAHCKRKVGVDWSRAQIAAIPVLALGFLGLISGKVLFGTWPAVLLFAWLGITAGMCFTAPLYHYYV
Ga0134121_120728642	3300010401	Terrestrial Soil	CEKGRFSFWEKQSLGPARNLTCAECRRPVSVCWNRAQLAAVPAVALGFLGLIAGKMAFGTWAAVFLGGWLGVTIGMLITAPLYHYYVPLKKPTD*
Ga0137476_1002852	3300011241	Glacier Forefield Soil	MSYACPWCGKGRFSFWDKQSLGPTRTLNCPDCKRAVGVCWNRAQLAAIPAVALGFLGLIAGKVLFLTWPAVFLGGWIGVTVGMLITAPLYHLYVPLVKDN*
Ga0137422_10639242	3300011416	Soil	MYSCPWCSKGRFSFWDKQSLGPARNLTCTQCKRPVSVCWSRAQIAAIPAIALGFLGLIAGKVLFLTWPAVFLGGWIGITIGMLITAPLYHWYVPLVKPTD*
Ga0150985_1090810243	3300012212	Avena Fatua Rhizosphere	MYACPWCEQTSFSFWQKQSLGPARNLTCQHCKRPVSVCWNRAQLAAVPVVALGFLGLIAGKMVFGTWSAVFLFAWLGVTTGMLITAPLYHWYVPLKKPD*
Ga0150985_1192259081	3300012212	Avena Fatua Rhizosphere	PFKGGRKMYACPWCSKASFSFWQKQSLGPKRALVCGHCRRNVSVNWNRAQLAAVPVLALGFLGLISGKVLFGTWPAVLLFAWLGITAGMLFTAPLYHFYVPLVRGTAAASR*
Ga0157284_100991342	3300012893	Soil	MYACPWCAKGRFSFWEKQSLGPTRTISCASCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKALFMTWPAVFLGGWLGVTLGMLVTAPLYHLYVPLEKATD*
Ga0157284_103288841	3300012893	Soil	MYSCPWCSKGRFSFWQKQSLGPARNLTCNQCKRPVSVCWNRAQVAAIPAIALGFLGLIAGKVLFMTWPAVFLGGWIGISAGMLITAPLYHWYVPLVKPTD*
Ga0157302_104081992	3300012915	Soil	YTCPWCEKGRFSFWEKQTLGPARNLTCQSCKRPVSVCWNRAQIAAVPAISLGFLGLIAGKVLFMTWPAVLLGGWLGITLGMLFTAPLYHWYVPLVKETD*
Ga0157310_103527481	3300012916	Soil	MYACPWCGKGRFSFWEKQSLGPTRTLSCASCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKVLFMTWPAVLLGGWLGVTLGMLFTAPLYHWYVPLVKETD*
Ga0157372_133695032	3300013307	Corn Rhizosphere	MTYACPWCGKASFSFWQKQSLGPTRSLVCAHCKRKVGVDWSRAQIAAIPVLALGFLGLISGKVLFGTWPAVLLFAWLGITAGMCFT
Ga0163163_105218791	3300014325	Switchgrass Rhizosphere	KAVQGGRMSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWNRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHYYVPLTRGSATASR*
Ga0157380_100198392	3300014326	Switchgrass Rhizosphere	MYACPWCSKASFSFWEKQSLGPARALECAHCKRKVSVCWNRAQLAAIPVLALGFLGLIAGKYGFGTWPAVLLGGWLGVTIGMLVTAPLYHYFVPLVRGTAAATR*
Ga0180064_10276701	3300014876	Soil	MYSCPWCSKGRFSFWDKQSLGPARNLTCTQCKRPVSVCWSRAQIAAIPAVALGFLGLIAGKVLFLTWPAVFLGGWIGITIGMLITAPLYHWYVPLVKPTD*
Ga0167649_1171431	3300015063	Glacier Forefield Soil	MYSCPWCGKAGFSFWEKQSLGPRRALVCPHCRRKVSVCWNRAQLAAIPFIALGLLGLVAGNATYGTWSAVLLGAWLGTTLGMLITAPLYHFYVPLVRGQAA*
Ga0167654_10058452	3300015084	Glacier Forefield Soil	MYPCPWCSKASFSFWEKQSLGPKRTLECSHCKRKVSVCWNRAQLAAIPVIALGFLGLLVGQALFGSWSAVFLGGWLGVSLGMIITGPLYHLYVPLVRPTN*
Ga0167661_10032942	3300015167	Glacier Forefield Soil	MYSCPWCGKAGFSFWEKQSLGPRRALVCPHCRRKVSVCWNRAQLAAIPFVALGFLGLVTGHALYGSWSAVLLGAWLGTTLGMLITAPLYHFYVPLVRGAAA*
Ga0173480_102295812	3300015200	Soil	MYACPWCGKGRFSFWEKQSLGPTRTLSCASCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKALFMTWPAVFLGGWLGVTLGMLVTAPLYHLYVPLEKATD*
Ga0173478_101100751	3300015201	Soil	MYSCPWCEKGRFSFWDKQSLGPARNLTCETCKRPVSVCWNRAQVAAAPALALGFLGLIAGKVLFMTWPAVLLGGWLGITLGMLVTAPLYHWYVPLVKPTD*
Ga0173478_106206401	3300015201	Soil	MYSCPWCEKGKFSFWEKQSLGPARNLTCQQCKRPVSVCWSRAQMAAIPAVALGFLGLIAGKALFMTWPAILLGGWVGVTIGMLITAPLYHWYVPLQKPD*
Ga0163144_104330212	3300015360	Freshwater Microbial Mat	MYTCPWCSKASFSFWEKQSLGPKRTLQCSHCKRQVSVCWNKAQLAAIPVLALGFLGLLLGQGLFGSWSAVFLFGWLGASLGMIITAPLYHLYVPLVKPQQ*
Ga0132256_1016710802	3300015372	Arabidopsis Rhizosphere	MYACPWCGKGRFSFWEKQSLGPTRSLVCAHCNRKVSVCWNRAQLAAIPVLALGFLGLIAGKYAFGTWSAVLLGGWLGVTLGMLVTAPLYHYFVPLVRGTA
Ga0132257_1017733061	3300015373	Arabidopsis Rhizosphere	MYACPWCGKGRFSFWEKQSLGPTRSLVCAHCNRKVSVCWNRAQLAAIPVLALGFLGLIAGKYAFGTWSAVLLGGWLGVTLGMLVTAPLYHYFVPLVRGTAAAAR*
Ga0132255_1056335551	3300015374	Arabidopsis Rhizosphere	MYACPWCGKASFSFWEKQSLGPSRSLVCAHCKRKVSVDWNRAQVAAVPVLALGFLGLIAGKVLFGSWSAVLLFAWLGVTAGMLFTAPLYHYYVPLVRGTAVATR*
Ga0180121_101047222	3300017695	Polar Desert Sand	MYSCPWCSKASFSFWEKQSLGPKRTLECSHCRRKVSVCWNRAQLAAIPVIAIGFLGLVLGQVLFGTWSALLLGGWLGASLGMLFTGPLYHLYVPLVKPTS
Ga0184625_100848701	3300018081	Groundwater Sediment	MYACPWCEKGRFSFWEKQSLGPARNLTCAECRRPVSVCWNRAQLAAIPAVALGFLGLIAGKMAFGTWSAVFLGAWLGITIGMLITAPLYHYYVPLQKP
Ga0190274_102112442	3300018476	Soil	MYSCPWCEKGRFSFWDKQSLGPARNLTCGTCKRPVSVCWSRAQVAAAPALALGFLGLIAGKVLFMTWPAVLLGGWVGITLGMLVTAPLYHWYVPLVKPD
Ga0190274_103560752	3300018476	Soil	MYPCPWCSKASFSFWEKQSLGPTRSLVCRHCNRKVAVCWNRAQLAALPALALGFLGLIAGKAMFGTWAAVLLGGWVGVTFGMLITASLYHLYVPLVKPQ
Ga0190274_106071581	3300018476	Soil	MYACPWCAKGRFSFWEKQSLGPTRTISCASCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKALFMTWPAVFLGGWLGVTLGMLVTAPLYHLYVPLEKATD
Ga0190274_110418552	3300018476	Soil	MYACPWCAKGKFSFWEKQSLGPARNLTCRQCKRPVSVCWNRAQLAAIPAIALGFLGLIAGKALFMTWPAILLGGWVGITIGMLITAPLYHWYVPLQKPD
Ga0190271_110649801	3300018481	Soil	PFVSGSLPMYSCPWCEKGRFSFWDKQSLGPARNLTCGTCKRPVSVCWSRAQVAAAPALALGFLGLIAGKVLFMTWPAVLLGGWLGITLGMLVTAPLYHWYVPLVKPTD
Ga0193752_10920962	3300020027	Soil	MYECPWCNKAGFSFWEKQTLGPSRKLACPHCKKEVSVCWNRAQLAAIPVLAFGFLGMLAGREMYGTWSAVLLFAWIGITLGMAFTAPLYHFYVPLVRGGKIG
Ga0163153_1000116143	3300020186	Freshwater Microbial Mat	MYTCPWCSKASFSFWEKQSLGPKRTLQCSHCKRQVSVCWNKAQLAAIPVLALGFLGLLLGQGLFGSWSAVFLFGWLGASLGMIITAPLYHLYVPLVKPQQ
Ga0207642_100310392	3300025899	Miscanthus Rhizosphere	MSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWNRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHYYVPLTRGSATASR
Ga0207642_105138981	3300025899	Miscanthus Rhizosphere	SFWQKQSLGPTRSLVCGHCKRKVGVDWSRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFSWLGITGGMLFTAPLYHFYVPLTRGSATASR
Ga0207643_106063702	3300025908	Miscanthus Rhizosphere	MYACPWCEQTSFSFWQKQSLGPARNLTCQHCKKQVSVCWNRAQLAAVPVLALGFLGLIAGKMVFGTWSAVFLFAWLGVTAGMLITAPLYHWYVP
Ga0207654_102398922	3300025911	Corn Rhizosphere	MTYACPWCGKASFSFWQKQSLGPTRSLVCAHCKRKVGVDWSRAQIAAIPVLALGFLGLISGKVLFGTWPAVLLFAWLGITAGMCFTAPLYHYYVPLTRGTATASR
Ga0207662_106488221	3300025918	Switchgrass Rhizosphere	MSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWNRAQIAAIPVLALGLLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHYYVPLTRGSATASR
Ga0207694_101728102	3300025924	Corn Rhizosphere	MSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWSRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHFYVPLTRGSATASR
Ga0207659_111665402	3300025926	Miscanthus Rhizosphere	FWQKQSLGPTRSLVCGHCKRKVGVDWNRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHYYVPLTRGSATASR
Ga0207687_109493912	3300025927	Miscanthus Rhizosphere	ASFSFWQKQSLGPTRSLVCAHCKRKVGVDWSRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHFYVPLTRGSATASR
Ga0207706_116343691	3300025933	Corn Rhizosphere	ACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWNRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGISGGMLFTAPLYHYYVPLTRGSATASR
Ga0207686_108236681	3300025934	Miscanthus Rhizosphere	MSYACPWCGKASFSFWQKQSLGPTRSLVCGHCKRKVGVDWSRAQIAAIPVLALGFLGLIAGKVLFGTWSAVLLFAWLGITGGMLFTAPLYHFYVPL
Ga0207708_101139112	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MYACPWCSKASFSFWEKQSLGPARALECSHCKRKVSVCWNRAQLAAIPVLALGFLGLIAGKYGFGTWPAVLLGGWLGVTIGMLVTAPLYHYFVPLVRGTAAATR
Ga0209387_10095612	3300027639	Agricultural Soil	MYACPWCGKGRFSFWDKQSLGPTRTLSCPDCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKVLFLTLPAVFLGGWVGVTLGMLITAPLYHLYVPLVKET
Ga0209387_11404841	3300027639	Agricultural Soil	MYACPWCGKGRFSFWDKQSLGPTRSLSCPDCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKVLFLTWPAVFLGGWLGVTLGMLVTAPLYHLYVPLVKPTD
Ga0207428_100048453	3300027907	Populus Rhizosphere	MYSCPWCSKGRFSFWEKQSLGPARNLTCNQCKRPVSVCWNRAQVAAIPAIALGFLGLIAGKVLFMTWPAVFLGGWIGITAGMLITAPLYHWYVPLVKPTD
Ga0268266_101509232	3300028379	Switchgrass Rhizosphere	MYECPWCRKTSFSFWDKQTLGPTRKLSCGHCKKEVSVCWKSAQLAAIPVLALGFLGMLAGREAYGSWSAVMLFAWLGISFGMAFTAPLYHFYVPLVKPQ
Ga0247828_102259552	3300028587	Soil	MYACPWCSKASFSFWQKQALGPTRALECAHCKRKVSVCWNRAQLAAIPVLALGFLGLIAARYAFGTWPAVLLGGWVGVTIGMLITAPLYHYYVPLVRGTATASR
Ga0247828_104559632	3300028587	Soil	MYSCPWCNKGRFSFWDKQALGPARNLKCGTCKRPVSVSWNRAQLAAAPAVALGFLGLIAGKMLYMTWPAVFLGGWLGVTLGMLITAPLYHYFVPLVKPEEEY
Ga0247828_106546292	3300028587	Soil	MYACPWCSKASFSFWEKQSLGPTRAIECAHCKRKVSVCWNRAQLAAIPVLALGFLGLIAGKYAFGTWPAVLLGGWLGVTLGMLVTAPLYHYFVPLVRGTASASR
Ga0247825_104964092	3300028812	Soil	MYACPWCSKASFSFWQKQALGPTRALECAHCKRKVSVCWNRAQLAAIPVLALGFLGLIAARYAFGTWPAVLLGGWVGVTIGMLITAPLYHYY
Ga0247825_110967672	3300028812	Soil	MYSCPWCNEGRFSFWDKQALGPARNLKCRTCKRPVSVSWNRAQLAAAPAVALGFLGLIAGKMLYMTWPAVFLGGWVGVTIGMLV
Ga0247825_114728871	3300028812	Soil	MYSCPWCEKGRFSFWDKQSLGPARNLTCETCKRPVSVCWNRAQVAAAPALALGFLGLIAGKVLFMTWPAVFLGGWIGITAGMLITAPLYHWYVPLVKPTD
(restricted) Ga0255310_101201131	3300031197	Sandy Soil	GFSFWEKQSLGPKRALVCPHCRRKVSVCWNRAQLAAIPAIALGFLGLIAGKVLFGTWAAVFLGGWVGITVGMLITAPLYHWYVPLVKPTD
Ga0307505_1000171012	3300031455	Soil	MYACPWCGKGRFSFWDKQSLGPTRTLSCPDCKRAVGVCWNRAQLAAIPAIALGFLGLIAGKVLFMTWPAVFLGGWVGITLGMLITGPLYHLYVPLVKETS
Ga0307505_101808342	3300031455	Soil	MYACPWCGKGRFSFWQKQSLGPTRTLSCPDCKRPVSVCWNRAQLAAIPAVALGFLGLIAGKVLFLTWPAVFLGGWVGVTVGMLITAPLYHLYVPLVKEN
Ga0307408_1001621603	3300031548	Rhizosphere	MYSCPWCEKKSFSFWEKQSLGPARNLKCATCKKPVSVCWNRAQIAAVPAIALGFLGLIAGKSLFMTWPAILLGGWVGVTIGMLITAPLYHWYVPLKKPD
Ga0307408_1002162701	3300031548	Rhizosphere	MYACPWCGQKAFSFWQKQSLGPHKSLPCAACRRKVSVDWVRAQIAAAPTLLLAFLGLIAGKILFMTWPAILLGGWLGITIGFLITAPLYHVYVPLVKPTN
Ga0307408_1017293621	3300031548	Rhizosphere	MYACPWCGKGRFSFWDKQTLGPTRTKACPDCKKPVGVCWNRAQLAAIPAVALGFLGLIAGKILFMTWPAVFLGGWIGVTLGMLITAPLYHLYVPLVKEN
Ga0307405_103868052	3300031731	Rhizosphere	PPMYACPWCKKGHFSFWDKQSLGPARYLKCETCKREVGVCWNRAQIAAAPAVALGFLGLIAGKMLYMTWPAVLLGGWLGITLGMLITAPLYHFFVPLVKPE
Ga0307413_115490532	3300031824	Rhizosphere	ACPWCKKGHFSFWDKQSLGPARYLKCETCKREVGVCWNRAQIAAAPAVALGFLGLIAGKMLYMTWPAVLLGGWLGITLGMLITAPLYHFFVPLVKPE
Ga0307410_101056172	3300031852	Rhizosphere	MYACPWCGKGRFSFWDKQTLGPTRTKACPDCKKPVGVCWNRAQLAAIPAVALGFLGLIAGKILFMTWPAVFLGGWLGVTLGMLITAPLYHWYVPLVKET
Ga0307406_105780022	3300031901	Rhizosphere	MYSCPWCEKKSFSFWEKQSLGPARNLKCATCKKPVSVCWNRAQIAAVPAIALGFLGLIAGKSLFMTWPAILLGGWVGVTIGMLITAPLYHW
Ga0307412_102369241	3300031911	Rhizosphere	MYACPWCKKGHFSFWDKQSLGPARYLKCETCKREVGVCWNRAQIAAAPAVALGFLGLIAGKMLYMTWPAVLLGGWLGITLGMLITAPLYHFFVPLVKPE
Ga0307412_110213431	3300031911	Rhizosphere	DKQTLGPTRTKACPDCKKPVGVCWNRAQLAAIPAVALGFLGLIAGKILFMTWPAVFLGGWIGVTLGMLITAPLYHLYVPLVKEN
Ga0307409_1025758552	3300031995	Rhizosphere	VGPMYACPWCGKGRFSFWDKQTLGPTRTKACPDCKKPVGVCWNRAQLAAIPAVALGFLGLIAGKILFMTWPAVFLGGWIGVTLGMLITAPLYHLYVPLVKEN
Ga0307416_1012629211	3300032002	Rhizosphere	TAGQGVGPMYACPWCGKGRFSFWDKQTLGPTRTKACPDCKKPVGVCWNRAQLAAIPAVALGFLGLIAGKILFMTWPAVFLGGWIGVTLGMLITAPLYHLYVPLVKEN
Ga0307416_1030995681	3300032002	Rhizosphere	SFWQKQSLGPHKSLPCAACRRKVSVDWMRAQIAAAPTLLLAFLGLIAGKILFMTWPAILLGGWLGITLGFLITAPLYHVYVPLVKPTN
Ga0307411_100419582	3300032005	Rhizosphere	MYACPWCGKESFSFWEKQTLGPKRSLVCQHCKRKVSVSWERAQLAAIPVLAFGFLGLLVGKSVFGTWPAVFLFGWLGVTVGMIITAPLYHLYVPLVKPE
Ga0310890_112502851	3300032075	Soil	WCSKASFSFWQKQALGPTRALECAHCKRKVSVCWNRAQLAAIPVLALGFLGLIAARYAFGTWPAVLLGGWVGVTIGMLITAPLYHYYVPLVRGTATASR
Ga0310890_118014852	3300032075	Soil	MYACPWCNKGHFSFWDKQSLGPARYLKCETCKREVGVCWNRAQIAAAPAVALGFLGLIAGKMLYMTWPAVLLGGWLGITLGML
Ga0307415_1005074212	3300032126	Rhizosphere	MYACPWCGKGRFSFWDKQTLGPTRTKACPDCKKPVGVCWNRAQLAAIPAVALGFLGLIAGKILFMTWPAVFLGGWIGVTLGMLITA
Ga0247829_113401582	3300033550	Soil	MYSCPWCEKGRFSFWDKQSLGPARNLTCETCKRPVSVCWNRAQVAAAPALALGFLGLIAGKVLFMTWPAVLLGGWLGITLGMLVTAPQN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters