Basic Information | |
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IMG/M Taxon OID | 3300010313 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111485 | Gp0138776 | Ga0116211 |
Sample Name | Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 407828631 |
Sequencing Scaffolds | 25 |
Novel Protein Genes | 28 |
Associated Families | 28 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 3 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda | 1 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria | 1 |
Not Available | 6 |
All Organisms → cellular organisms → Bacteria | 4 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1 |
All Organisms → cellular organisms → Eukaryota → Opisthokonta | 1 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | 1 |
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 1 |
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | aquatic biome → hot spring → spring water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | South Africa: Limpopo | |||||||
Coordinates | Lat. (o) | -22.5304 | Long. (o) | 30.6814 | Alt. (m) | N/A | Depth (m) | 1.5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000261 | Metagenome / Metatranscriptome | 1428 | Y |
F001564 | Metagenome / Metatranscriptome | 670 | Y |
F004548 | Metagenome / Metatranscriptome | 433 | Y |
F004874 | Metagenome / Metatranscriptome | 420 | Y |
F005282 | Metagenome / Metatranscriptome | 406 | Y |
F006124 | Metagenome / Metatranscriptome | 381 | Y |
F010100 | Metagenome | 308 | Y |
F011177 | Metagenome / Metatranscriptome | 294 | Y |
F012911 | Metagenome / Metatranscriptome | 276 | Y |
F018543 | Metagenome / Metatranscriptome | 234 | Y |
F019160 | Metagenome | 231 | Y |
F020532 | Metagenome / Metatranscriptome | 223 | Y |
F020682 | Metagenome / Metatranscriptome | 222 | Y |
F024422 | Metagenome / Metatranscriptome | 206 | Y |
F038501 | Metagenome | 165 | Y |
F038738 | Metagenome | 165 | Y |
F042634 | Metagenome | 158 | Y |
F045048 | Metagenome / Metatranscriptome | 153 | Y |
F046219 | Metagenome | 151 | Y |
F050494 | Metagenome / Metatranscriptome | 145 | Y |
F051242 | Metagenome | 144 | Y |
F053823 | Metagenome / Metatranscriptome | 140 | Y |
F064351 | Metagenome | 128 | Y |
F072632 | Metagenome / Metatranscriptome | 121 | Y |
F086878 | Metagenome / Metatranscriptome | 110 | Y |
F091688 | Metagenome | 107 | Y |
F093898 | Metagenome / Metatranscriptome | 106 | Y |
F103450 | Metagenome / Metatranscriptome | 101 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0116211_1000330 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 27041 | Open in IMG/M |
Ga0116211_1002247 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 8616 | Open in IMG/M |
Ga0116211_1011078 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda | 3089 | Open in IMG/M |
Ga0116211_1017479 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria | 2295 | Open in IMG/M |
Ga0116211_1038120 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1380 | Open in IMG/M |
Ga0116211_1045756 | Not Available | 1226 | Open in IMG/M |
Ga0116211_1046781 | All Organisms → cellular organisms → Bacteria | 1210 | Open in IMG/M |
Ga0116211_1081909 | Not Available | 854 | Open in IMG/M |
Ga0116211_1099744 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 759 | Open in IMG/M |
Ga0116211_1100356 | All Organisms → cellular organisms → Eukaryota → Opisthokonta | 757 | Open in IMG/M |
Ga0116211_1115281 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | 697 | Open in IMG/M |
Ga0116211_1153944 | Not Available | 594 | Open in IMG/M |
Ga0116211_1160033 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 582 | Open in IMG/M |
Ga0116211_1164200 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 574 | Open in IMG/M |
Ga0116211_1164929 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 573 | Open in IMG/M |
Ga0116211_1166668 | All Organisms → cellular organisms → Bacteria | 570 | Open in IMG/M |
Ga0116211_1185909 | Not Available | 538 | Open in IMG/M |
Ga0116211_1190628 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 531 | Open in IMG/M |
Ga0116211_1194608 | Not Available | 525 | Open in IMG/M |
Ga0116211_1197657 | Not Available | 521 | Open in IMG/M |
Ga0116211_1200419 | All Organisms → cellular organisms → Bacteria | 517 | Open in IMG/M |
Ga0116211_1201822 | All Organisms → cellular organisms → Bacteria | 515 | Open in IMG/M |
Ga0116211_1210266 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales | 504 | Open in IMG/M |
Ga0116211_1210996 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia | 503 | Open in IMG/M |
Ga0116211_1211740 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 502 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0116211_1000330 | Ga0116211_100033027 | F051242 | MKEDDPSKANDEKSLKLTVCKPEDQAFQRLHLCKYLSELYESAEEENKSSVEKKKA* |
Ga0116211_1002247 | Ga0116211_10022477 | F010100 | VEQLVEEQPLQEELAVLLNLPPLEKAKADIIRLTFLLLHLGQVIFSEELNTSFSNSCSHCLQ* |
Ga0116211_1011078 | Ga0116211_10110783 | F053823 | MFTINPLDHNTKGTIDIIINSKSRIKKIIQKIKNRKETGNTLTLKESKPHSNPSDLIIFDLTNKLPTPITKGITKEINK* |
Ga0116211_1017479 | Ga0116211_10174792 | F000261 | MPTVRLRGAAEYPEAAQALFAASKAWFNYEFAEPPAMSRVMAWDSAFGGPHGRAMKRAMMPGEFTRAEKEMVAAVVSGVNACAY* |
Ga0116211_1038120 | Ga0116211_10381201 | F093898 | MMRFLLARAVNPSTTLLEGLRDWNKFAAALREPPRKRRRYQADSWDAFLS* |
Ga0116211_1045756 | Ga0116211_10457563 | F045048 | VFNNGNSKGFIPCIPKGGHCAPNSTLGEIALWKNAQNIAKKKNTSDIMNKPTPKFNPFCTALV* |
Ga0116211_1046781 | Ga0116211_10467813 | F001564 | MSGEWPERPSLRFLIHWALRRNELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEMGVLLRRALDIRAALKLGVRIGLDEIRADEFQSLVVLEEERERLEQMRLADR* |
Ga0116211_1081909 | Ga0116211_10819092 | F004874 | MGFNAMRPGRVKRGDLLYLLAAVVVVAALVFWAVR* |
Ga0116211_1099744 | Ga0116211_10997441 | F046219 | LDLRAALKLGIPVGLDEIRADEFRALVVLEEEQTSAERERISRVPG* |
Ga0116211_1100356 | Ga0116211_11003561 | F038501 | VKTEKLGGVAGGEGECGDDVAGWLVRERRSLDILPVKKEAKLSASEVPGEVVGSGEEDLRCRSLLTVCQRRLGLSEAEDTR |
Ga0116211_1113439 | Ga0116211_11134391 | F091688 | RIAAELAEFGFDASRGLPPENPGRVCAMLATATDPMFFSGRDVHGPTFHAEHALTRFEG* |
Ga0116211_1115281 | Ga0116211_11152811 | F005282 | MTGLPWTIAVAFLVSILVLDALPASAEQSTFVGNAGTITLDWRTSQDRAGRPLIVGHVITYGSKSGYCRPSLLVETLDAEGRTIARHVGFVLGYLGGFDDLYFEEPVRAP |
Ga0116211_1134021 | Ga0116211_11340211 | F086878 | MAQPSGKPAFSDEERQALAESARLCEMIIEANPSDTG |
Ga0116211_1153944 | Ga0116211_11539441 | F018543 | QCAAANRRPAEQSGGSGNLAAIVATDRALPAAVAELGR* |
Ga0116211_1160033 | Ga0116211_11600332 | F019160 | MKLYLYYECINHPLCVDIPDDEVEGFMREYEEALHDTNVETFQWKGSCFRIGGLTAILHRDHLPK* |
Ga0116211_1164200 | Ga0116211_11642001 | F072632 | LDIKSKDNSEDCQNTVTQLRRVVNDVNTFTNGEECIQFIEDINDNKVCMIISGSLGQHVVPRVHNMSQVDSIFIFCGNPKYHEWSKKWPKIKGVFTSIAPICEALKQASQQCEQNAISISVVATSGNEANTNLDRLDPMFMYSQIIKEILLTIDFELKHFKININR* |
Ga0116211_1164929 | Ga0116211_11649292 | F038738 | MATETTYTLDQFLADTRATIKAKGVPSGLAEIRDHLEKLLH |
Ga0116211_1166668 | Ga0116211_11666681 | F042634 | QLGFYFAHFRPSDTEDLPGLARALRLQMADALRAGYIEANEAGMEFLRYLPLSAMLRVLPWTAGGELFSFNCADLAEWPPALDRCFGRRVVNAYHIPVVPPRPGLGVFFNRCGARHNVVVSWIEGVVEPDDAARIIEVVRGEMGWTRTP* |
Ga0116211_1185379 | Ga0116211_11853791 | F103450 | QVGFEIGLNLEEILNSLGARRDTWWGYGLHFVLDNFRVPFTSVGFFYDLNAGKWYGPGNGNTYATR* |
Ga0116211_1185909 | Ga0116211_11859091 | F004548 | NDFQCFLNKFAANDTYANCDGSTGTPLLTANDFQCFLNKFAAGCS* |
Ga0116211_1190628 | Ga0116211_11906282 | F020682 | VKRHNITLSEPLSEMVQAQVKQGRYKDFSAALQDAAWNFFFGPASPFEEYGVTPDEVERSAQRDLAAIRQDRRAGNLKPFKPGK* |
Ga0116211_1194608 | Ga0116211_11946081 | F011177 | MNEDAVLLPAEAAQRRGIPTRVVVQAMHERTLPRVKLEDGTLGIPADALDTFQIQTA* |
Ga0116211_1197657 | Ga0116211_11976572 | F020532 | MKQPASKRKKLDYPEETEGSRIAAKIRKLASKLTPEEEAEYIRRGMAKIYGGQPKEISGTGH* |
Ga0116211_1200419 | Ga0116211_12004191 | F006124 | DPDEKKVFQALDGPQYTWRTTSGIARQTGLSEERVAAILKKYDLTLTRQSETPAVSGSALVGLIEKVGV* |
Ga0116211_1201822 | Ga0116211_12018222 | F064351 | AAANGLSAVRSSVAGIRERTVRSTAAAEAVAELGR* |
Ga0116211_1210266 | Ga0116211_12102661 | F012911 | MAEQHDSKFDEFLAIRKPGAHLEAEVVPDDFVMQLGVDLTNYHKFPRVDDNVTYPKANLDIRQELDRDSGAELPDYSGPYKADLRFTDFSKQALASKFLPWSEAYMQLCVDGWAREVAKRYGTETMAEIEWAAWVAQVVPEIERMKQEFLPAG |
Ga0116211_1210996 | Ga0116211_12109961 | F050494 | MSDTLIIRGHYTGRTFVPDGPLPDAEGVAELVITTTVHRSTGSIADAFGTATELRSAAEILAKARADRDDWGDR* |
Ga0116211_1211740 | Ga0116211_12117401 | F024422 | MSLDYQKGAWPAWNLEPENGVPVPCALGQPWVNEDTQITLEKLRIPRTDPWGKPLPGEPEDPVLARLRRDPAD* |
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