NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010313

3300010313: Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG



Overview

Basic Information
IMG/M Taxon OID3300010313 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111485 | Gp0138776 | Ga0116211
Sample NameHot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size407828631
Sequencing Scaffolds25
Novel Protein Genes28
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1
Not Available6
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomehot springspring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationSouth Africa: Limpopo
CoordinatesLat. (o)-22.5304Long. (o)30.6814Alt. (m)N/ADepth (m)1.5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000261Metagenome / Metatranscriptome1428Y
F001564Metagenome / Metatranscriptome670Y
F004548Metagenome / Metatranscriptome433Y
F004874Metagenome / Metatranscriptome420Y
F005282Metagenome / Metatranscriptome406Y
F006124Metagenome / Metatranscriptome381Y
F010100Metagenome308Y
F011177Metagenome / Metatranscriptome294Y
F012911Metagenome / Metatranscriptome276Y
F018543Metagenome / Metatranscriptome234Y
F019160Metagenome231Y
F020532Metagenome / Metatranscriptome223Y
F020682Metagenome / Metatranscriptome222Y
F024422Metagenome / Metatranscriptome206Y
F038501Metagenome165Y
F038738Metagenome165Y
F042634Metagenome158Y
F045048Metagenome / Metatranscriptome153Y
F046219Metagenome151Y
F050494Metagenome / Metatranscriptome145Y
F051242Metagenome144Y
F053823Metagenome / Metatranscriptome140Y
F064351Metagenome128Y
F072632Metagenome / Metatranscriptome121Y
F086878Metagenome / Metatranscriptome110Y
F091688Metagenome107Y
F093898Metagenome / Metatranscriptome106Y
F103450Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0116211_1000330All Organisms → cellular organisms → Bacteria → Proteobacteria27041Open in IMG/M
Ga0116211_1002247All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria8616Open in IMG/M
Ga0116211_1011078All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda3089Open in IMG/M
Ga0116211_1017479All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria2295Open in IMG/M
Ga0116211_1038120All Organisms → cellular organisms → Bacteria → Proteobacteria1380Open in IMG/M
Ga0116211_1045756Not Available1226Open in IMG/M
Ga0116211_1046781All Organisms → cellular organisms → Bacteria1210Open in IMG/M
Ga0116211_1081909Not Available854Open in IMG/M
Ga0116211_1099744All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria759Open in IMG/M
Ga0116211_1100356All Organisms → cellular organisms → Eukaryota → Opisthokonta757Open in IMG/M
Ga0116211_1115281All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium697Open in IMG/M
Ga0116211_1153944Not Available594Open in IMG/M
Ga0116211_1160033All Organisms → cellular organisms → Bacteria → Proteobacteria582Open in IMG/M
Ga0116211_1164200All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea574Open in IMG/M
Ga0116211_1164929All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium573Open in IMG/M
Ga0116211_1166668All Organisms → cellular organisms → Bacteria570Open in IMG/M
Ga0116211_1185909Not Available538Open in IMG/M
Ga0116211_1190628All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium531Open in IMG/M
Ga0116211_1194608Not Available525Open in IMG/M
Ga0116211_1197657Not Available521Open in IMG/M
Ga0116211_1200419All Organisms → cellular organisms → Bacteria517Open in IMG/M
Ga0116211_1201822All Organisms → cellular organisms → Bacteria515Open in IMG/M
Ga0116211_1210266All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales504Open in IMG/M
Ga0116211_1210996All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia503Open in IMG/M
Ga0116211_1211740All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0116211_1000330Ga0116211_100033027F051242MKEDDPSKANDEKSLKLTVCKPEDQAFQRLHLCKYLSELYESAEEENKSSVEKKKA*
Ga0116211_1002247Ga0116211_10022477F010100VEQLVEEQPLQEELAVLLNLPPLEKAKADIIRLTFLLLHLGQVIFSEELNTSFSNSCSHCLQ*
Ga0116211_1011078Ga0116211_10110783F053823MFTINPLDHNTKGTIDIIINSKSRIKKIIQKIKNRKETGNTLTLKESKPHSNPSDLIIFDLTNKLPTPITKGITKEINK*
Ga0116211_1017479Ga0116211_10174792F000261MPTVRLRGAAEYPEAAQALFAASKAWFNYEFAEPPAMSRVMAWDSAFGGPHGRAMKRAMMPGEFTRAEKEMVAAVVSGVNACAY*
Ga0116211_1038120Ga0116211_10381201F093898MMRFLLARAVNPSTTLLEGLRDWNKFAAALREPPRKRRRYQADSWDAFLS*
Ga0116211_1045756Ga0116211_10457563F045048VFNNGNSKGFIPCIPKGGHCAPNSTLGEIALWKNAQNIAKKKNTSDIMNKPTPKFNPFCTALV*
Ga0116211_1046781Ga0116211_10467813F001564MSGEWPERPSLRFLIHWALRRNELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEMGVLLRRALDIRAALKLGVRIGLDEIRADEFQSLVVLEEERERLEQMRLADR*
Ga0116211_1081909Ga0116211_10819092F004874MGFNAMRPGRVKRGDLLYLLAAVVVVAALVFWAVR*
Ga0116211_1099744Ga0116211_10997441F046219LDLRAALKLGIPVGLDEIRADEFRALVVLEEEQTSAERERISRVPG*
Ga0116211_1100356Ga0116211_11003561F038501VKTEKLGGVAGGEGECGDDVAGWLVRERRSLDILPVKKEAKLSASEVPGEVVGSGEEDLRCRSLLTVCQRRLGLSEAEDTR
Ga0116211_1113439Ga0116211_11134391F091688RIAAELAEFGFDASRGLPPENPGRVCAMLATATDPMFFSGRDVHGPTFHAEHALTRFEG*
Ga0116211_1115281Ga0116211_11152811F005282MTGLPWTIAVAFLVSILVLDALPASAEQSTFVGNAGTITLDWRTSQDRAGRPLIVGHVITYGSKSGYCRPSLLVETLDAEGRTIARHVGFVLGYLGGFDDLYFEEPVRAP
Ga0116211_1134021Ga0116211_11340211F086878MAQPSGKPAFSDEERQALAESARLCEMIIEANPSDTG
Ga0116211_1153944Ga0116211_11539441F018543QCAAANRRPAEQSGGSGNLAAIVATDRALPAAVAELGR*
Ga0116211_1160033Ga0116211_11600332F019160MKLYLYYECINHPLCVDIPDDEVEGFMREYEEALHDTNVETFQWKGSCFRIGGLTAILHRDHLPK*
Ga0116211_1164200Ga0116211_11642001F072632LDIKSKDNSEDCQNTVTQLRRVVNDVNTFTNGEECIQFIEDINDNKVCMIISGSLGQHVVPRVHNMSQVDSIFIFCGNPKYHEWSKKWPKIKGVFTSIAPICEALKQASQQCEQNAISISVVATSGNEANTNLDRLDPMFMYSQIIKEILLTIDFELKHFKININR*
Ga0116211_1164929Ga0116211_11649292F038738MATETTYTLDQFLADTRATIKAKGVPSGLAEIRDHLEKLLH
Ga0116211_1166668Ga0116211_11666681F042634QLGFYFAHFRPSDTEDLPGLARALRLQMADALRAGYIEANEAGMEFLRYLPLSAMLRVLPWTAGGELFSFNCADLAEWPPALDRCFGRRVVNAYHIPVVPPRPGLGVFFNRCGARHNVVVSWIEGVVEPDDAARIIEVVRGEMGWTRTP*
Ga0116211_1185379Ga0116211_11853791F103450QVGFEIGLNLEEILNSLGARRDTWWGYGLHFVLDNFRVPFTSVGFFYDLNAGKWYGPGNGNTYATR*
Ga0116211_1185909Ga0116211_11859091F004548NDFQCFLNKFAANDTYANCDGSTGTPLLTANDFQCFLNKFAAGCS*
Ga0116211_1190628Ga0116211_11906282F020682VKRHNITLSEPLSEMVQAQVKQGRYKDFSAALQDAAWNFFFGPASPFEEYGVTPDEVERSAQRDLAAIRQDRRAGNLKPFKPGK*
Ga0116211_1194608Ga0116211_11946081F011177MNEDAVLLPAEAAQRRGIPTRVVVQAMHERTLPRVKLEDGTLGIPADALDTFQIQTA*
Ga0116211_1197657Ga0116211_11976572F020532MKQPASKRKKLDYPEETEGSRIAAKIRKLASKLTPEEEAEYIRRGMAKIYGGQPKEISGTGH*
Ga0116211_1200419Ga0116211_12004191F006124DPDEKKVFQALDGPQYTWRTTSGIARQTGLSEERVAAILKKYDLTLTRQSETPAVSGSALVGLIEKVGV*
Ga0116211_1201822Ga0116211_12018222F064351AAANGLSAVRSSVAGIRERTVRSTAAAEAVAELGR*
Ga0116211_1210266Ga0116211_12102661F012911MAEQHDSKFDEFLAIRKPGAHLEAEVVPDDFVMQLGVDLTNYHKFPRVDDNVTYPKANLDIRQELDRDSGAELPDYSGPYKADLRFTDFSKQALASKFLPWSEAYMQLCVDGWAREVAKRYGTETMAEIEWAAWVAQVVPEIERMKQEFLPAG
Ga0116211_1210996Ga0116211_12109961F050494MSDTLIIRGHYTGRTFVPDGPLPDAEGVAELVITTTVHRSTGSIADAFGTATELRSAAEILAKARADRDDWGDR*
Ga0116211_1211740Ga0116211_12117401F024422MSLDYQKGAWPAWNLEPENGVPVPCALGQPWVNEDTQITLEKLRIPRTDPWGKPLPGEPEDPVLARLRRDPAD*

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