Metagenome / Metatranscriptome Family F086878

Basic Information
Family ID	F086878
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	50 residues
Representative Sequence	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGD
Number of Associated Samples	107
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	6.36 %
% of genes from short scaffolds (< 2000 bps)	6.36 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Most Common Taxonomy
Group	Unclassified (93.636 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (12.727 % of family members)
Environment Ontology (ENVO)	Unclassified (33.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (34.545 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.87% β-sheet: 0.00% Coil/Unstructured: 55.13%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF03259	Robl_LC7	75.45
PF00025	Arf	14.55
PF00071	Ras	4.55
PF02518	HATPase_c	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2018	Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family	Signal transduction mechanisms [T]	75.45
COG1100	GTPase SAR1 family domain	General function prediction only [R]	14.55

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.64 %
All Organisms	root	All Organisms	6.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.64 %
cellular organisms	root	All Organisms → cellular organisms	6.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.64 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	6.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.64 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	6.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.64 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	6.36 %

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100228780	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1750	Open in IMG/M
3300019880\|Ga0193712_1016607	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1535	Open in IMG/M
3300020002\|Ga0193730_1025923	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1696	Open in IMG/M
3300020003\|Ga0193739_1016318	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1938	Open in IMG/M
3300022531\|Ga0242660_1009446	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1626	Open in IMG/M
3300022724\|Ga0242665_10015695	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1657	Open in IMG/M
3300025965\|Ga0210090_1004467	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1870	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.55%
Host-Associated	Host-Associated	15.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.91%
Plants	Host-Associated → Plants	15.45%
Aquatic	Environmental → Aquatic	12.73%
Unclassified	Environmental → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.36%
Sediment	Environmental → Aquatic → Sediment	5.45%
Marine	Environmental → Aquatic → Marine	3.64%
Freshwater	Environmental → Aquatic → Freshwater	2.73%
Floodplain	Environmental → Terrestrial → Floodplain	1.82%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.91%
Unclassified	Environmental → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.18%
Loam	Environmental → Terrestrial → Soil → Loam	6.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.45%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.64%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.64%
Sand	Environmental → Terrestrial → Soil → Sand	2.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.82%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.91%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.18%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.55%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.64%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.82%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.91%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.91%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.64%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.64%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.73%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.82%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.82%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Hot Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring	0.91%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.91%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.91%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.91%
	Environmental → Unclassified → Unclassified → Unclassified → Unclassified →	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908016	Sample 642	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004052	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005875	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010313	Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014873	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200B_16_10D	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025959	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025965	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027424	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027614	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M
3300034155	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17	Environmental	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
OU_00374440	2124908016		MAQIGGKAGLSEEERQSLSESARLCEMIIEANPADTGALETLKEVYTKLGDRERLSQVV
JGI24737J22298_100428411	3300001990	Corn Rhizosphere	MAQTESKPLSQEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVV
JGIcombinedJ26739_1002287801	3300002245	Forest Soil	MAQIESXPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARV
Ga0055490_100256834	3300004052	Natural And Restored Wetlands	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLAR
Ga0062593_1003053263	3300004114	Soil	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIY
Ga0055489_100762411	3300004145	Natural And Restored Wetlands	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVVARLA
Ga0062589_1000761414	3300004156	Soil	MAQIENRTSLSPEEKRSLSESARLCEMIVEANPSDTGALE
Ga0070668_1006308431	3300005347	Switchgrass Rhizosphere	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRESLARVVARL
Ga0070700_1002351601	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKL
Ga0070708_1008858291	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTQGSRLTSFSDDERQSLAESARLCEMIVEANPSDTGALETLKEI
Ga0066697_103698281	3300005540	Soil	VSGKASLSDEERRSLVESARLCEMIVEANPSDTGALETLKETYTKLGDRERLGQVVG
Ga0068855_1016760182	3300005563	Corn Rhizosphere	MAQIENRTSLSPEEKRSLSESARLCEMIVEANPSDTGALETLKEIYTKLG
Ga0068852_1000972671	3300005616	Corn Rhizosphere	MAQTESKPLSQEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENL
Ga0068861_1000062381	3300005719	Switchgrass Rhizosphere	MAQTESKPLSQEEKRSLAESARLCEMIVEANPSDTGALETLKE
Ga0075293_10086621	3300005875	Rice Paddy Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGD
Ga0075023_1000872181	3300006041	Watersheds	MAQIESKPLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTK
Ga0066665_112256462	3300006796	Soil	VSGKASLSDEERRSLVESARLCEMIVEANPSDTGALETLKEIYTKLGDRERLGQVVGRMA
Ga0079221_109825312	3300006804	Agricultural Soil	MAQTESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLA
Ga0075421_1021495441	3300006845	Populus Rhizosphere	MAQIENKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVVA
Ga0075425_1017608931	3300006854	Populus Rhizosphere	MIHHDGLMALSDDDRQSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRDRL
Ga0075435_1020129582	3300007076	Populus Rhizosphere	MAQVNAKAPISDEERQSLVESARLCEMIVEANPSDTGALETLKEIYTKLGDRERLGHVMARLATL
Ga0099830_116224641	3300009088	Vadose Zone Soil	MPKAEPKASSLSSEEKRSLSESARLCEMIVQAIPSDTGALET
Ga0111539_107819193	3300009094	Populus Rhizosphere	MPDVNSKTSFSDEERHSLVESARLCEMIIEANPSDTGALETLKEIY
Ga0105082_10817541	3300009814	Groundwater Sand	MAQIESKTLSTEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLG
Ga0105068_10423563	3300009836	Groundwater Sand	MAQASGRTSLSDEERQALAESAQVCEMIVEANPSDTGALETLKE
Ga0126382_108298141	3300010047	Tropical Forest Soil	MPDVNSKPSFSDEERHSLVESASLCEMIVEANPSDTGALETLKEIYTKLGDRERLAQVM
Ga0116211_11340211	3300010313	Hot Spring	MAQPSGKPAFSDEERQALAESARLCEMIIEANPSDTG
Ga0126377_110374493	3300010362	Tropical Forest Soil	MPDVNSKPSFSDEERHSLVESASLCEMIVEANPSDTGALETLKEIYTKLGDRERLSQVMA
Ga0126383_109572372	3300010398	Tropical Forest Soil	MAPPSGKPSFSDEERQSLAESARLCEMIIEANPADTGALETLKEI
Ga0150983_134103703	3300011120	Forest Soil	MAQTESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRE
Ga0137389_104978321	3300012096	Vadose Zone Soil	MAQASGKASFSDEARQSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRERLGQVVG
Ga0137383_103424783	3300012199	Vadose Zone Soil	MAQIVSKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYT
Ga0137363_115385532	3300012202	Vadose Zone Soil	MAQTESKPLSPEEKRSLAESARLCEMIVEANPSDTGAL
Ga0137399_105436311	3300012203	Vadose Zone Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVVA
Ga0137376_115689872	3300012208	Vadose Zone Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVV
Ga0137372_112417172	3300012350	Vadose Zone Soil	MAQASGRTSLSQEERQALAESAQVCEMIVEANPSDTGALETLKEIYTKLGDRER
Ga0137369_102847191	3300012355	Vadose Zone Soil	MAQTDNKTSLSSEEKRSLVESVRLCEMIVEANPLDIGALEILKEIYTKLGS
Ga0137358_102692243	3300012582	Vadose Zone Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVVARLSG
Ga0137398_107814602	3300012683	Vadose Zone Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLGRVVARLAG
Ga0137359_116719981	3300012923	Vadose Zone Soil	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTG
Ga0137404_110242531	3300012929	Vadose Zone Soil	MAPVSGKAGLSEVERQSLTESAQLCEMIVEVIPSDTGALENMKEIYTKL
Ga0164301_103465453	3300012960	Soil	MAQTESKPLSQEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVVARLAG
Ga0157371_109234231	3300013102	Corn Rhizosphere	MAQIENRTSLSPEEKRSLSESARLCEMIVEANPSDTGALETLKEIYTKLADRDNLARVVARLA
Ga0157372_130587901	3300013307	Corn Rhizosphere	MAKTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALET
Ga0157380_102639234	3300014326	Switchgrass Rhizosphere	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALE
Ga0180066_10021711	3300014873	Soil	MPQSEPTVSLSSEEKRSLFESARLCEMIVQANPSDTGALETLKEIYSKLGDPENLS
Ga0134085_105562461	3300015359	Grasslands Soil	MAQASGKASFSAEERQSLMESARLCEMIVEANPSDTGALETLKEIYTKLGDRERLGPVV
Ga0134112_102979002	3300017656	Grasslands Soil	MAQASDKASFSAEERQSLVESARLCEMIVEANPSDTGALETLKEIYTKLGDRERLGQVVGRMA
Ga0134083_104700082	3300017659	Grasslands Soil	MAQASDKASFSAEERQSLVESARLCEMIVEANPSD
Ga0187824_101073613	3300017927	Freshwater Sediment	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDT
Ga0187780_105667381	3300017973	Tropical Peatland	MAQIDNKTSLSPEEKRSLSESARLCEMIVEANPSDTG
Ga0184620_101006381	3300018051	Groundwater Sediment	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVVAR
Ga0184609_104575891	3300018076	Groundwater Sediment	MAQIDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLAR
Ga0066667_120803732	3300018433	Grasslands Soil	VSGKASLSDEERRSLVESARLCEMIVEANPSDTGALETLKETYTRL
Ga0190270_111350551	3300018469	Soil	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDT
Ga0184646_15049063	3300019259	Groundwater Sediment	MAQIDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVVARLA
Ga0137408_11712901	3300019789	Vadose Zone Soil	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRVGRAWPG
Ga0193712_10166074	3300019880	Soil	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTK
Ga0193718_11004231	3300019999	Soil	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLG
Ga0193731_10129581	3300020001	Soil	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRESL
Ga0193730_10259231	3300020002	Soil	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRESLARVV
Ga0193739_10163184	3300020003	Soil	MAQIDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLA
Ga0193749_10208041	3300020010	Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKE
Ga0180109_12435373	3300020067	Groundwater Sediment	MAQIDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIY
Ga0179592_101146761	3300020199	Vadose Zone Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRE
Ga0210403_114789001	3300020580	Soil	MAQIEKTSLSQEEKRSLSESARLCEMIVEANPSDTGALETLKEIYSKLGDQE
Ga0242648_10345013	3300022506	Soil	MAQTESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKE
Ga0242660_10094461	3300022531	Soil	MAQTESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDR
Ga0242665_100156951	3300022724	Soil	MAQTESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGD
Ga0247797_10114351	3300023057	Soil	MAQIENRTSLSPEEKRSLSESARLCEMIVEANPSDTGA
Ga0209108_102707223	3300025165	Soil	MAQKDSKGSMSTEEKHSLEESARLCEMIVEANPSDTGALETLKEIYTKLGDREKLAKIVVRLA
Ga0209642_101018434	3300025167	Soil	MAQKDSKGSMSTEEKHSLEESARLCEMIVEANPSDTGALETLKEIYTKLGDR
Ga0207688_101407244	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MAQTESKPLSQEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLA
Ga0207709_102546133	3300025935	Miscanthus Rhizosphere	MAQTESKPLSQEEKRSLAESARLCEMIVEANPSDTGALETLK
Ga0207711_102518324	3300025941	Switchgrass Rhizosphere	MAQTESKPLSQEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVTPATVITTDT
Ga0210116_11140691	3300025959	Natural And Restored Wetlands	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVVARLAG
Ga0210090_10044671	3300025965	Natural And Restored Wetlands	MAPIDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKL
Ga0257149_10097051	3300026355	Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTK
Ga0257173_10002764	3300026360	Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLGRVV
Ga0257176_10309123	3300026361	Soil	MAQIDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGA
Ga0257179_10212711	3300026371	Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALET
Ga0257178_10478832	3300026446	Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLGR
Ga0257169_10804882	3300026469	Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDREN
Ga0257157_10039444	3300026496	Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEI
Ga0209056_106134802	3300026538	Soil	VSGKASLSDEERRSLVESARLCEMIVEANPSDTGALETLKETYTRLGDRERLGQVVG
Ga0209161_103729022	3300026548	Soil	MAQAGGKASLSDEERQSLAESARLCEMIVEANPSDT
Ga0209984_10021221	3300027424	Arabidopsis Thaliana Rhizosphere	MAQIENRTSLSPEEKRSLSESARLCEMIVEANPSDTGALETLKEIYTKLADRDN
Ga0209527_10390583	3300027583	Forest Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETL
Ga0209970_10079981	3300027614	Arabidopsis Thaliana Rhizosphere	MAQIENRTSLSPEEKRSLSESARLCEMIVEANPSDTG
Ga0256866_11137821	3300027650	Soil	MAPSDNKTLLSSEEKRSLAESARLCEMIVEANPSDT
Ga0209583_107735032	3300027910	Watersheds	MAQIEKTSLSQEEKRSLSESARLCEMIVEANPSDTGALETLKEIYSK
Ga0209069_106728652	3300027915	Watersheds	MAQIEKTSLSQEEKRSLSESARLCEMIVEANTSDT
Ga0209526_102505561	3300028047	Forest Soil	MAQTESKPLSPEEKRSLAESARLCEMIVEANPSDTGALET
Ga0257175_10319703	3300028673	Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLK
Ga0307504_100587503	3300028792	Soil	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGAL
Ga0307504_100862343	3300028792	Soil	MARKDTGDSLSSDERSSLLESARLCEMIVEANPADTGALETLKEIYTKLDDREKLAKI
Ga0307299_103508331	3300028793	Soil	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVV
Ga0308187_100794571	3300031114	Soil	MAQIESKPLSPEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVVARLAGT
(restricted) Ga0255311_10667483	3300031150	Sandy Soil	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKLGDRENLARVVARLS
Ga0307473_114446242	3300031820	Hardwood Forest Soil	MSQTSRAAPLSEAERQSLGESARLCEMIVEANPSDTGALETLKEIYTKLGDRERLGQ
Ga0310904_109158862	3300031854	Soil	MPDVNSKTSFSDEERHSLVESARLCEMIIEANPSDTGALET
Ga0306921_114423011	3300031912	Soil	MPDVNSKAPFSDEERHSLVESARLCEMIVEANPSDTGALETLKEIYTKL
Ga0214473_119918572	3300031949	Soil	MAQIDSKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLKEI
Ga0214473_121200522	3300031949	Soil	MTQADSRSSIAPEERDSLLESARLCEMIVEANPSDTGALETLKEIYTKLGDRD
Ga0307471_1000348081	3300032180	Hardwood Forest Soil	MAQIEKTSLSQEEKRSLSESARLCEMIVEANPSDTGALETLKEIYSKLGE
Ga0307471_1034402382	3300032180	Hardwood Forest Soil	MTQTSGTASFSEEERQSFAESARLCEMIIEANPFDTGALETLKEIYTKLGDRAR
Ga0335080_121794241	3300032828	Soil	MAPPTSKAPLSDDERQSLAESARLCEMILEANASDTGALETLKEIYTKL
Ga0364930_0097245_819_1004	3300033814	Sediment	MAQKDSKGSMSTEEKHSLEESARLCEMIVEANPSDTGALETLKEIYTKLGDREKLAKIVVRL
Ga0370498_130849_470_598	3300034155	Untreated Peat Soil	MAQTDNKTSLSSEEKRSLAESARLCEMIVEANPSDTGALETLK
Ga0364942_0059717_2_148	3300034165	Sediment	MAQTENKTSLSQEEKRSLAESARLCEMIVEANPSDTGALETLKEIYTKL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086878

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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