Metagenome Family F091688

Overview

Basic Information

• Family ID: F091688
• Family Type: Metagenome
• Number of Sequences: 107
• Average Sequence Length: 53 residues
• Representative Sequence: FGFDASKALPVENPGRVCAMLATAKDPMYFSGKDIYGPGFHAEHALVRFD
• Number of Associated Samples: 96
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 92
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (19.626 % of family members)
• Environment Ontology (ENVO): Unclassified (30.841 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (57.009 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 23.08%
  β-sheet: 0.00%
  Coil/Unstructured: 76.92%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00296	Bac_luciferase	31.78
PF01040	UbiA	11.21
PF00378	ECH_1	5.61
PF00578	AhpC-TSA	2.80
PF06742	DUF1214	1.87
PF04542	Sigma70_r2	1.87
PF01346	FKBP_N	1.87
PF02777	Sod_Fe_C	1.87
PF07883	Cupin_2	1.87
PF01797	Y1_Tnp	0.93
PF13193	AMP-binding_C	0.93
PF04545	Sigma70_r4	0.93
PF07690	MFS_1	0.93
PF12697	Abhydrolase_6	0.93
PF13450	NAD_binding_8	0.93
PF13469	Sulfotransfer_3	0.93
PF00975	Thioesterase	0.93
PF04493	Endonuclease_5	0.93
PF01593	Amino_oxidase	0.93
PF05721	PhyH	0.93
PF00903	Glyoxalase	0.93
PF12680	SnoaL_2	0.93
PF00795	CN_hydrolase	0.93
PF00106	adh_short	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	31.78
COG0545	FKBP-type peptidyl-prolyl cis-trans isomerase	Posttranslational modification, protein turnover, chaperones [O]	1.87
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.87
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	1.87
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.87
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.87
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.87
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	1.87
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	1.87
COG1515	Deoxyinosine 3'-endonuclease (endonuclease V)	Replication, recombination and repair [L]	0.93
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.93
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.65%
Host-Associated	Host-Associated	9.35%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.44%
Aquatic	Environmental → Aquatic	11.21%
Plants	Host-Associated → Plants	9.35%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.50%
Freshwater	Environmental → Aquatic → Freshwater	6.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.74%
Marine	Environmental → Aquatic → Marine	1.87%
Sediment	Environmental → Aquatic → Sediment	1.87%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%
Cave	Environmental → Terrestrial → Cave	0.93%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.35%
Loam	Environmental → Terrestrial → Soil → Loam	9.35%
Lake	Environmental → Aquatic → Freshwater → Lake	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.80%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.93%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	22.43%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.15%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.87%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	19.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	1.87%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment	0.93%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.93%
Hot Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring	0.93%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
2088090009	Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - SIP 13C-methane anaerobic+nitrate	Environmental
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental
3300004025	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1	Environmental
3300004052	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2	Environmental
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental
3300010313	Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG	Environmental
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental
3300013127 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm	Environmental
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental
3300020084	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m	Environmental
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
LWAnN_07626760	2088090009	Freshwater Sediment	ALELAEFGFDAAKGLPVENPGRVCAMLATAKHPLLFSGKDLYGPTFHAEHANVSFE
F14TC_1025677782	3300000559	Soil	FGFDASKGLPTDNPGRVCAMLATADDPMFFSGRDVHGPTFYSEHALTRFA*
Ga0055433_101745261	3300004025	Natural And Restored Wetlands	VENPGRVCAMLATSKNPMHFSGRDLRGPELYLEHSLLRFDG*
Ga0055490_101895081	3300004052	Natural And Restored Wetlands	PGFVGTERMAAELGEFGFDASKALPVENPGRVCAMLATATDPMVFSGRDLRGPEVYREHAVLRFEP*
Ga0066395_103666581	3300004633	Tropical Forest Soil	MPGFVGTERMAQELGEFGFDAAKALPVENPGRVCAMLATAKDPMHFSGKDIYGPAFHAEHALVRFETEGNR*
Ga0066672_106907572	3300005167	Soil	SKALPVENPGRVCAMLATAKDPMHFSGKDIYGPDFHAEHALVRFD*
Ga0066685_106537041	3300005180	Soil	ELGEFGFDASKALPVENPGRVCAMLATAKDPMHFSGTDLYGPAFYAEHALVRFEA*
Ga0066388_1003254563	3300005332	Tropical Forest Soil	GFVATERMAAELGPFGFDASKGLPVENPGRVCAMLATAKDPMFFTGRDVHGPTFHAEHAVTRFDG*
Ga0066388_1072052742	3300005332	Tropical Forest Soil	FVATERMAAELAAFGFDASKGLPTENPGRVCAMLATADDPMLFSGRDIHGPTFHAEHATTRFA*
Ga0068869_1010026081	3300005334	Miscanthus Rhizosphere	GLMPGFVGTERMAIELKEFGFDAARGLPVENPGRVCAMLATAKDPLYFSGKDIFGPGFHAEHSQVRFD*
Ga0070673_1012828582	3300005364	Switchgrass Rhizosphere	MPGFVGTERMAIELGEFGFDASKALPVENPGRVCAMLATAKDPMHFSGRDLRGPELYREHSLLRFDD*
Ga0070708_1018941131	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPGFVGTERMAQELGEFGFDATKALPVENPGRVCAMLATARNPMYFSGKDIYGPAFHAEHALVRFDAEEGDR*
Ga0066701_100889593	3300005552	Soil	EFGFDASKALPVENPGRVCAMLATAKDPMHFSGKDIYGPDFHAEHALVRFD*
Ga0066701_101674781	3300005552	Soil	LPVENPGRVCAMLATAKDPMYFSGKDIYGPGFHAEHALVRFD*
Ga0066701_107207752	3300005552	Soil	KALPVENPGRVCAMLATAKDPMHFSGTDLYGPAFYAEHALVRFEA*
Ga0066698_103073721	3300005558	Soil	VQNPGRVCAMLATAKDPMYFSGKDVYGPAFHAEHSLISLDE*
Ga0066706_107245902	3300005598	Soil	GFDASKALPVENPGRVCAMLATAKDPMYFSGKDIYGPGFHAEHALVHFD*
Ga0066905_1015099231	3300005713	Tropical Forest Soil	FVGTERMAAELGEFGFDASKALPVENPGRVCAMLATATDPMVFSGRDLDGPTFYAEHAGVTFAR*
Ga0066903_1021428361	3300005764	Tropical Forest Soil	PVENPGRVCAMLATAADPMYFSGKDVYGPAFHAEHANVRFEV*
Ga0066903_1033953972	3300005764	Tropical Forest Soil	PGRVCAMLATAENPLYFSGKDVYGPAFHAEHAIVRFD*
Ga0066903_1043815311	3300005764	Tropical Forest Soil	LPPDNPGRVCAMLATADDPMWFSGRDVHGPTFHTEHAITRFA*
Ga0066656_106638592	3300006034	Soil	VENPGRVCAMLATAKDPMYFSGKDVYGPGFHAEHALVRFD*
Ga0066665_115209321	3300006796	Soil	RMAIELGEFGFDASKALPVENPGRVCAMLATAKDPMHFSGTDLYGPAFYAEHALVRFEA*
Ga0066659_105615172	3300006797	Soil	LPVENPGRVCAMLATAKDPMYFSGKDIYGPGFHADHALVRFD*
Ga0079221_114226251	3300006804	Agricultural Soil	GRVCGMLATAKDPMFFSGKDIFGPGFHAEHALVRFDP*
Ga0075433_109509241	3300006852	Populus Rhizosphere	EFGFDASKALPVENPGRVCAMLATAADPMHFSGRDLRGPELYREHELLRFEP*
Ga0075425_1009015741	3300006854	Populus Rhizosphere	EFGFDASKALPVENPGRVCAMLATAENPLYFSGKDVYGPAFHAEHAIVRFD*
Ga0079215_102292452	3300006894	Agricultural Soil	REYGFDPSKGLPVENPGRVCAMLATARDPMFFSGRDLRGPEFFAEHEQVRFSE*
Ga0079219_113041321	3300006954	Agricultural Soil	FGFDAAKALPVENPGRVCAMLATATDPMHFSGKDIYGPAFHAEHALVRFETGGNR*
Ga0099793_106550911	3300007258	Vadose Zone Soil	GFDASKALPVENPGRVCAMLATAKDPMYFSGKDVYGPGFHTEHALVRFD*
Ga0066709_1018397901	3300009137	Grasslands Soil	NPGRVCAMLATAKDPMHFSGTDLYGPAFYAEHALVRFEA*
Ga0075423_109122622	3300009162	Populus Rhizosphere	VGTERMAAELGEFGFDASKALPVENPGRVCAMLATAENPLYFSGKDVYGPAFHAEHAIVRFD*
Ga0126374_115535151	3300009792	Tropical Forest Soil	SKALPVENPGRVCAMLATAKDPMFFTGKDIYGPAFHAEHMLVTP*
Ga0126382_106412772	3300010047	Tropical Forest Soil	GFVGTERMAAELGEFGFDASKALPVENPGRVCAMLATATDPMVFSGRDLDGPTFYAEHAGVTFAGQVAPGSSR*
Ga0116211_11134391	3300010313	Hot Spring	RIAAELAEFGFDASRGLPPENPGRVCAMLATATDPMFFSGRDVHGPTFHAEHALTRFEG*
Ga0134064_104219322	3300010325	Grasslands Soil	GFDASKALPVENPGRVCAMLATSTNPMRFSGRDLRGPEMYLDHAALKFD*
Ga0134080_100729883	3300010333	Grasslands Soil	GFDASKALPVENPGRVCAMLATAKDPMYFSGKDVYGPGFHAEHALVRFD*
Ga0134063_102931402	3300010335	Grasslands Soil	FVGTERMAAELAEFGFDASKALPVENPGRVCAMLATAKDPMHFSGKDIYGPDFHAEHALVRFD*
Ga0134063_106500752	3300010335	Grasslands Soil	FVGTERMAAELAEFGFDASKALPVENPGRVCAMLATAKDPMYFSGKDIYGPGFHAEQALVRFD*
Ga0126372_106752821	3300010360	Tropical Forest Soil	IELAEFGFDASKGLPVENPGRVCAMLATAAEPLYFSGKDIYGPAFHEEHRLVRFD*
Ga0126379_105902442	3300010366	Tropical Forest Soil	FVATERMAAELGPFGFDASKGLPVENPGRVCGMLATADDPMFFSGRDVHGPTFHAEHALTRFAG*
Ga0136847_112113502	3300010391	Freshwater Sediment	VPTTVEPVEHPGRVCAMLATASAPLWFSGRDVHGPTFYAEHAGVRFAPA*
Ga0136847_125900952	3300010391	Freshwater Sediment	GRVCAMLATAKDPMFFSGKDVYGPGFHAEHALVRFE*
Ga0126383_127214461	3300010398	Tropical Forest Soil	KGLPTDNPGRVCAMLATADDPMLFSGHDVYGPRFYAEHAGTRFAP*
Ga0134122_123202812	3300010400	Terrestrial Soil	ENPGRVCAMLATARDPMVFTGKDIHGPTFYAEHEGVIFN*
Ga0137358_100609871	3300012582	Vadose Zone Soil	MAAELAEFGFDASKALPVENPGRVCAMLATAKDPMYFSGKDIYGPGFHAEHALVRFD*
Ga0157289_103596152	3300012903	Soil	MDSTREALRRLVVGTLMPGFVGTERMAIELGQFGFDASKALPVENPGRVCAMLATSTNPMHFSGRDLRGPELYLEHSLLRFDD*
Ga0126369_121144372	3300012971	Tropical Forest Soil	ENPGRVCAMLATAKDPMHFSGRDLRGPELHLEHSLLRFDG*
Ga0134077_101121031	3300012972	Grasslands Soil	PVENPGRVCAMLATAKDPMHFSGKDIYGPDFHAEHALVRFD*
(restricted) Ga0172365_100971253	3300013127	Sediment	VCAMLATAKDPMVFSGRDIFGPTFHDDHANVRFT*
Ga0134078_100590473	3300014157	Grasslands Soil	SKALPVENPGRVCAMLATAKDPMYFSGKDVYGPGFHAEHALVRFE*
Ga0075353_11270061	3300014321	Natural And Restored Wetlands	GFDPAKGLSVENPGRVCAMLASARDPMVFTGRDLRGPEFYAEHEGVQFDPPGDG*
Ga0137405_14204916	3300015053	Vadose Zone Soil	MAAELGEFGFDASKALPVENPGRVCAMLATAEDPMHFSGRDIHGPSFHAEHALVRFEG*
Ga0137418_105966752	3300015241	Vadose Zone Soil	MAAELGEFGFDASKALPVENPGRVCAMLATAKDPMFFSGKDIYGPGFHAEHALVRFD*
Ga0180085_11360141	3300015259	Soil	GFVGTERMAIELGEFGFDASKALPVENPGRVCAMLATSANPMHFSGRDLRGPELYLEHSLLRFDG*
Ga0134085_103625782	3300015359	Grasslands Soil	LPVENPGRVCAMLATAKDPMYFSGKDIYGPGFHAEHALVHFD*
Ga0132257_1019884262	3300015373	Arabidopsis Rhizosphere	GTERMAAELGEFGFDASKALPVENPGRVCAMLATAKDPMYFSGKDVYGPAFHAEHANVQFEV*
Ga0132255_1057131801	3300015374	Arabidopsis Rhizosphere	KGLPTDNPGRVCAMLATADDPMFFSGRDVHGPTFHAEHALTRFG*
Ga0132255_1059654082	3300015374	Arabidopsis Rhizosphere	NPGRVCAMLATASDPMYFSGKDIFGPGFHAEHSLVRFDR*
Ga0182034_115079381	3300016371	Soil	ELGPFGFDASKGLLVENPGRVCAMLATAEDPMFFSGRDVHGPTFHAEHALTRFAG
Ga0134112_100443541	3300017656	Grasslands Soil	AELAEFGFDASKALPVENPGRVCAMIATAKDPMYFSGKDIYGPGFHAEHTLVRFD
Ga0134074_10210911	3300017657	Grasslands Soil	FGFDASKALPVENPGRVCAMLATAKDPMYFSGKDIYGPGFHAEHALVRFD
Ga0187785_107537172	3300017947	Tropical Peatland	GEFGFDASKALPVENPGRVCAMLATSSDPMFFSGRDLRGPELYAEHARLRFADDA
Ga0187779_106494792	3300017959	Tropical Peatland	SKGLPVENPGRVCAMLATAADPLYFSGKDIYGPAFHEDHRLVRFD
Ga0184615_102447891	3300018059	Groundwater Sediment	MPGFVGTERMAIELKDFGFDASKGLPVENPGRVCAMLATAKDPLYFSGKDIYGPGFYAEHEQVRFE
Ga0066669_110628072	3300018482	Grasslands Soil	GLAAVRALPVEHPGRVCAMLATAKDPMHFSGRDVHGPSFHAEHALVHFE
Ga0187894_104658672	3300019360	Microbial Mat On Rocks	GLMPGFVGTERMAIELKEFGFDASKGLPVENPGRVCAMLATAKDPLYFSGTDLYGPSFHAEHELVRFE
Ga0173479_102567271	3300019362	Soil	MAIELGQFGFDASKALSVENPGRVCAMLATSTNPMHFSGRDLRGPELYLEHSLLRFDD
Ga0194110_105139441	3300020084	Freshwater Lake	VDNPGRVCAMLATATDPMVFSGRDIFGPTFHEDHANVRFS
Ga0207665_108429641	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	FGFDASKALPVENPGRVCAMLATATDPMHFSGKDIYGPAFHAEHALVRFEA
Ga0207678_116607062	3300026067	Corn Rhizosphere	MPGFVGTERMAIELADFGFDASRGLPVENPGRVCAMLATATDPLLFSGKDIYGPLFHAEHAAVRFDAS
Ga0207678_119918302	3300026067	Corn Rhizosphere	TERMAIELGDFGFDASKALPVDNPGRVCAMLATAKDPLFFSGRDIYGPDLYAEMARLRFE
Ga0209761_11362041	3300026313	Grasslands Soil	SKALPVENPGRVCAMLATAKDPMYFSGKDVYGPGFHAEHALVRFE
Ga0209268_10040651	3300026314	Soil	TERMAAELAEFGFDASKALPVENPGRVCAMLATAKDPMYFSGKDIYGPGFHAEHALVHFD
Ga0209802_10134778	3300026328	Soil	GLMPGFVGTERMAAELAEFGFDASKALPVENPGRVCAMLATAKDPMYFSGKDIYGPGFHAEHALVRFD
Ga0209267_12985101	3300026331	Soil	PVENPGRVCAMLATAKDPMHFSGKDIYGPDFHAEHALVRFD
Ga0209803_10199081	3300026332	Soil	ELAEFGFDASKALPVENPGRVCAMLATARDPMYFSGKDVYGPGFHAEHALVRFD
Ga0209159_11536172	3300026343	Soil	ERMAAELAEFGFDASKALPVENPGRVCAMLATAKDPMYFSGKDVYGPGFHAEHALVRFE
Ga0257180_10459821	3300026354	Soil	ELAEFGFDASKALPVENPGRVCAMLATAKDPMYFSGKDVYGPGFHAEHALVRFD
Ga0209378_11698971	3300026528	Soil	ALPVENPGRVCAMLATAKDPMHFSGKDIYGPDFHAEHALVRFD
Ga0209058_11962461	3300026536	Soil	ENPGRVCAMLATAKDPLYFSGKDVYGPGFHAEHALVRFE
Ga0209058_12208962	3300026536	Soil	ASKALPVENPGRVCAMLATAKDPMHFSGKDVYGPDFHAEHALVRFD
Ga0209157_13296442	3300026537	Soil	MAAELAEFGFDASKALPVENPGRVCAMLATAKDPMYFSGKDIYGPGFHAEHALVRFD
Ga0209056_102235753	3300026538	Soil	MPGFVGTERMAIELGEFGFDASKALPVENPGRVCAMLATAKDPMHFSGTDLYGPAFYAEHALVRFEA
Ga0209161_105732451	3300026548	Soil	KALPVENPGRVCAMLATARDPMYFSGKDVYGPGFHAEHALVRFD
Ga0268386_102031971	3300030619	Soil	LGEFGFDASKALPVEHPGRVCAMLATARDPLFFSGRDLRGPEVYAQAERLRFDG
Ga0318542_104806011	3300031668	Soil	AELGPFGFDASKGLPVENPGRVCAMLATAEDPMFFSGRDVHGPTFHAEHALTRFAG
Ga0318574_107154361	3300031680	Soil	FGFDASKALPVENPGRVCAMLATATDPMFFSGRDVFGPAFFEEHRQVRFD
Ga0310813_118691321	3300031716	Soil	LAEFGFDASKALPVENPGRVCAMLATAKDPMYFSGKDVYGPAFHAEHANVQFEV
Ga0318494_106931401	3300031751	Soil	AELGPFGFDASKGLPVENPGRVCAMLATADDPMFFSGRDVHGPTFHAEHALTRFAG
Ga0318554_101233463	3300031765	Soil	IGLMPGFVGTERMAAELGEFGFDATKALPVENPGRVCAMLATATDPMFFSGRDVFGPAFFEEHRQVRFD
Ga0318565_102017332	3300031799	Soil	KGLPVENPGRVCAMLATAEDPMFFSGRDVHGPTFHAEHALTRFAG
Ga0306919_110309972	3300031879	Soil	FVATERMAAELGPFGFDASKGLPVENPGRVCAMLATAEDPMFFSGRDVHGPTFHAEHALTRFAG
Ga0310912_113061221	3300031941	Soil	VATERMAAELGPFGFDASKGLPVENPGRVCAMLATAEDPMFFSGRDVHGPTFHAEHALTRFAG
Ga0306926_116584492	3300031954	Soil	PGRVCAMLATAEDPMFFSGRDVHGPTFHAEHALTRFAG
Ga0315276_123746571	3300032177	Sediment	FDAAKGLPPENPGRVCAMLATADDPMWFSGRDVHGPTFHAEHAITRFD
Ga0307471_1010178771	3300032180	Hardwood Forest Soil	ELGEFGFDASKALPVENPGRVCAMLATAKDPMYFSGKDVYGPAFHAEHANVQFEV
Ga0307471_1031370091	3300032180	Hardwood Forest Soil	GFVATERMAAELAEFGFDASKGLPVENPGRVCAMLATAKDPLHFSGKDIFGPGFYAEHSLVRFET
Ga0306920_1033933641	3300032261	Soil	GDYGFDATKALPVENPGRVCAMLATAKDPLHFSGRDILGPAFYAEHSQVRFD
Ga0335082_104235893	3300032782	Soil	EMADFGFDASKGLPVENPGRVCAMLATARDPLYFSGRDIYGPTFYSEHELVDFD
Ga0335080_118777652	3300032828	Soil	GDFGFDASKGLPVENPGRVCAMLATARDPLYFSGRDIYGPTFYSEHELVDFD
Ga0335070_111649581	3300032829	Soil	VGTERMAIELGEFGFDASKALPVENPGRVCAMLATAKDPMFFTGRDVYGPTFFDEHRLVSFE
Ga0335084_112877613	3300033004	Soil	SKGLPVENPGRVCAMLATARDPLYFSGRDIYGPTFYSEHELVDFD
Ga0334722_107740631	3300033233	Sediment	ASKALAVENPGRVCAMLATATDPLWFSGRDVHGPTFHAEHALVRFDPA
Ga0316601_1017060652	3300033419	Soil	LMPGFVGTERMAIELGEYGFDASKALPVENPGRVCAMLATAKDPMYFSGRDLRGPELYLEHSLLRFED
Ga0316613_108251571	3300033434	Soil	RTAVELREYGFDPAKGLPVENPGRVCAMLATARDPMFFTGRDLRGPEFHAEHEQVQFAPPGDG
Ga0316624_101088561	3300033486	Soil	AIELGDFGFDASRGLPVENPGRVCAMLATAHDPLVFSGRDIYGPTFYEDHAQTRFDWS