3300009070: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_1000_biof (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300009070
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095089 | Ga0066256
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_1000_biof (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 473466628
• Sequencing Scaffolds: 16
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon HGW-Altiarchaeales-2	1
Not Available	9
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	1
All Organisms → Viruses → environmental samples → uncultured archaeal virus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Cape Town, South Africa
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004515	Metagenome	434	Y
F007322	Metagenome	353	Y
F013535	Metagenome / Metatranscriptome	270	Y
F014281	Metagenome / Metatranscriptome	264	Y
F016496	Metagenome / Metatranscriptome	246	N
F019951	Metagenome / Metatranscriptome	226	N
F025775	Metagenome	200	Y
F026802	Metagenome / Metatranscriptome	196	N
F036087	Metagenome	170	N
F053823	Metagenome / Metatranscriptome	140	Y
F060596	Metagenome / Metatranscriptome	132	N
F069722	Metagenome / Metatranscriptome	123	Y
F069970	Metagenome	123	Y
F075683	Metagenome	118	N
F075684	Metagenome / Metatranscriptome	118	Y
F088268	Metagenome	109	N
F093254	Metagenome	106	Y
F096615	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066256_1000626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	78548
Ga0066256_1002017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24150
Ga0066256_1002667	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	19064
Ga0066256_1005525	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	10405
Ga0066256_1028557	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon HGW-Altiarchaeales-2	2181
Ga0066256_1042651	Not Available	1436
Ga0066256_1045756	Not Available	1338
Ga0066256_1049205	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	1250
Ga0066256_1059050	Not Available	1060
Ga0066256_1069564	Not Available	886
Ga0066256_1076033	Not Available	732
Ga0066256_1076037	Not Available	732
Ga0066256_1076649	Not Available	717
Ga0066256_1078480	Not Available	677
Ga0066256_1078582	Not Available	675
Ga0066256_1086054	All Organisms → Viruses → environmental samples → uncultured archaeal virus	587

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066256_1000608	Ga0066256_100060830	F014281	MAGMKIYLLMLLIGALFTAIHFTSIPDAGSKSLPQ*
Ga0066256_1000626	Ga0066256_100062621	F025775	MKHLLTFQGFPMVVVIALIVWSWFSILSVIVAKLF*
Ga0066256_1002017	Ga0066256_100201717	F013535	MTFEFSLLIVYRLLAFGVAAAMVWVVLRDRDWRSQVFAAMVMIPFALRAAGLK*
Ga0066256_1002667	Ga0066256_100266717	F069970	MTTQLNKTLQVGDRVTFDNDQIELFKAETSSTDKAVRQYQQLVLGGIDQVGIVKELGGNLTTVSYPDGWDLPVPTKYLIVLPSE*
Ga0066256_1005525	Ga0066256_10055253	F053823	MFTINPLDHNTKGAIDIIINSKSRIKKIIQKIKNRKETGNTLTLKESKPHSNPSDLIIFDLTNKLPTPITKGITKEINK*
Ga0066256_1028557	Ga0066256_10285572	F016496	MEDKIKRHRGFFKKGNKYQQKGRAGLRYGGTTPVAKDKEKNLERLRSGWKPKTLICTNITISDDEEAFANEFSKKVSEENDTYVDTFLIELAIAQILQVHRVYVYAKEKKISRDASRMIGTVLSTLREMNATKNARKEDNIKVTVNSDIMTLIQQNLNLISNDESKKGNNIDKK*
Ga0066256_1042651	Ga0066256_10426512	F036087	MSSTTTRTLYDPNTHPVAAAYVDANAAERHAARETWLASDEERGYRFAVYRTVGLRHCDSVPRRRESPHLCRPSELRHRVYLWVRAIAAELEPQTATYWLVCHAYPVHPRTGRSDHGLLAEYILAVHPEAPLCIGYMAHDWVVDPSAHAGRAPGDRRSLLVCLRCGKRHEYREQADPQAPWPWQSYGMEWDPELAWPT*
Ga0066256_1045756	Ga0066256_10457563	F069722	LSAELDPKAKKGRPDLETGAAHAKALGHRRGAALQE*
Ga0066256_1049205	Ga0066256_10492054	F060596	MENKEARVGAIPISDENIKKSEVAKKKMAKNRTMVLLDRKIVNRLCCCKNKIGNTYNSVIGNLLDEYENKINKDGQ*
Ga0066256_1059050	Ga0066256_10590502	F088268	MPTSAEIVEYLASEGLLDIQPWRDAGALSAMDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0066256_1059050	Ga0066256_10590504	F093254	RRAIMSDTSYRKMMAALRERTEGDFTLLSQDAADALSLARWREYPNWAKEEPIVESAVPEIIYDAIHGDGTAASCSYETLRRAALDYLEIVTRDDWNCP*
Ga0066256_1069564	Ga0066256_10695641	F096615	MLQRVTASANRQHPNFKENEMAGWFGNNPEDRARERELNNYLDAADRLDNAERITELALDKFNALPSFYSPKDARYRYTFMDDAMDSLKQEELIAIARLLRDGEHLQAGKLLEASLMRVLVAEAEEEIEDEEND*
Ga0066256_1076033	Ga0066256_10760331	F075684	MDIASPPKTDAEQKKKAKKIDNFQREIEKRWIEVRADKEEIRTTMTILYERSKIRIKYMGVAEEEQMSWADIRRDIENQMKNSFCM*
Ga0066256_1076037	Ga0066256_10760372	F075683	MVSIYTTHMQPATGWIDQCGEVEIRGGFDAGEMIRCVCCDKKRPAEDCVVQCYYDGMSVWCAEGKGCKSRAEIEQKRLIAHENRSRGQRARRAKERLLLAAVVPLD*
Ga0066256_1076649	Ga0066256_10766492	F026802	MDYLLPFSRNLTQGNTEEIAAADPGHLVGVFLWFKSGSQGFHPLHGQISISNIGTTKEYLLKNGIYAIFQRGTDGFMLNDWYQPAFIPLDHDIRANHQVLLETFTWGANFISVRGHFVYSK*
Ga0066256_1078480	Ga0066256_10784801	F004515	QIEAWGIKNMVQTIRSETLLPGQKMILLEKPLVLNRIFFSIRALADQSAWYQSKVSFDDPLFSSFYVLNGPGKYFEARGEGIFQGDIWVTNASDQNLQYTVTEILI*
Ga0066256_1078582	Ga0066256_10785822	F007322	RPRLYSIIVRVDDEDAIMIVIDRKAIGVVELAWFLAFLAELGHERAIVTREYLHSMVVAIDDEQETSMMVEHQAIRAVELAIGIACLLGANRELDSSITIKSIVSHLFHFNLSHTTTKR*
Ga0066256_1086054	Ga0066256_10860541	F019951	MTILFKEFRINVSGNNVKCKANNKLYVQKGQKIILHAIQIAPGASTADEDVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFDADAVEGQTFVTKAWGPN