Metagenome Family F088268

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088268
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	68 residues
Representative Sequence	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLNESMESIAANLRARRARFGIPTEDL
Number of Associated Samples	54
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	70.75 %
% of genes near scaffold ends (potentially truncated)	42.20 %
% of genes from short scaffolds (< 2000 bps)	95.41 %
Associated GOLD sequencing projects	40
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (83.486 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer (73.394 % of family members)
Environment Ontology (ENVO)	Unclassified (99.083 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (98.165 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.06% β-sheet: 0.00% Coil/Unstructured: 52.94%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF04404	ERF	2.75
PF01555	N6_N4_Mtase	1.83
PF13539	Peptidase_M15_4	0.92
PF13361	UvrD_C	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0863	DNA modification methylase	Replication, recombination and repair [L]	1.83
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	1.83
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	1.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.49 %
All Organisms	root	All Organisms	16.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.49 %
cellular organisms	root	All Organisms → cellular organisms	11.01 %
Viruses	superkingdom	All Organisms → Viruses	5.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.49 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	11.01 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.49 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.49 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.49 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.49 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003830\|Ga0051980_10220997	Not Available	954	Open in IMG/M
3300003830\|Ga0051980_10281272	Not Available	797	Open in IMG/M
3300004212\|Ga0066631_10459428	Not Available	535	Open in IMG/M
3300005235\|Ga0066637_10179915	Not Available	912	Open in IMG/M
3300005236\|Ga0066636_10315450	Not Available	652	Open in IMG/M
3300005236\|Ga0066636_10333344	Not Available	627	Open in IMG/M
3300005236\|Ga0066636_10382277	Not Available	569	Open in IMG/M
3300005236\|Ga0066636_10447982	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300005237\|Ga0066644_10165964	Not Available	618	Open in IMG/M
3300007964\|Ga0100400_1221318	Not Available	677	Open in IMG/M
3300007964\|Ga0100400_1263644	Not Available	598	Open in IMG/M
3300007965\|Ga0100401_1210035	Not Available	806	Open in IMG/M
3300007965\|Ga0100401_1282665	Not Available	645	Open in IMG/M
3300007965\|Ga0100401_1292587	Not Available	628	Open in IMG/M
3300007965\|Ga0100401_1318061	Not Available	591	Open in IMG/M
3300007985\|Ga0100381_1232854	Not Available	888	Open in IMG/M
3300007987\|Ga0100379_10278756	Not Available	840	Open in IMG/M
3300007987\|Ga0100379_10354754	Not Available	705	Open in IMG/M
3300007987\|Ga0100379_10448944	Not Available	596	Open in IMG/M
3300007988\|Ga0100402_1499403	Not Available	502	Open in IMG/M
3300008001\|Ga0100389_1254634	Not Available	795	Open in IMG/M
3300008001\|Ga0100389_1304975	Not Available	702	Open in IMG/M
3300008001\|Ga0100389_1395548	Not Available	589	Open in IMG/M
3300008002\|Ga0100390_10247216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	912	Open in IMG/M
3300008002\|Ga0100390_10293242	Not Available	804	Open in IMG/M
3300008002\|Ga0100390_10345943	Not Available	712	Open in IMG/M
3300008002\|Ga0100390_10534279	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300008003\|Ga0100391_1515808	Not Available	521	Open in IMG/M
3300008003\|Ga0100391_1515810	Not Available	521	Open in IMG/M
3300008004\|Ga0100395_1261331	Not Available	720	Open in IMG/M
3300008004\|Ga0100395_1300076	Not Available	655	Open in IMG/M
3300008004\|Ga0100395_1359776	Not Available	578	Open in IMG/M
3300008005\|Ga0100385_1147424	Not Available	1246	Open in IMG/M
3300008005\|Ga0100385_1275032	Not Available	794	Open in IMG/M
3300008008\|Ga0100399_1055617	Not Available	1934	Open in IMG/M
3300008008\|Ga0100399_1181999	Not Available	839	Open in IMG/M
3300008008\|Ga0100399_1200495	Not Available	781	Open in IMG/M
3300008008\|Ga0100399_1349947	Not Available	518	Open in IMG/M
3300008009\|Ga0100394_1281896	Not Available	749	Open in IMG/M
3300008010\|Ga0100397_1260153	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300008011\|Ga0100396_1069547	Not Available	1629	Open in IMG/M
3300008011\|Ga0100396_1212425	Not Available	735	Open in IMG/M
3300008018\|Ga0100382_1141045	Not Available	847	Open in IMG/M
3300008020\|Ga0100398_1284068	Not Available	713	Open in IMG/M
3300008020\|Ga0100398_1311067	Not Available	665	Open in IMG/M
3300008085\|Ga0100378_1256691	Not Available	843	Open in IMG/M
3300008086\|Ga0100388_10469216	Not Available	582	Open in IMG/M
3300008093\|Ga0100393_10528799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	524	Open in IMG/M
3300008094\|Ga0100387_10275647	Not Available	834	Open in IMG/M
3300008094\|Ga0100387_10489790	All Organisms → cellular organisms → Bacteria → Proteobacteria	559	Open in IMG/M
3300008095\|Ga0100392_1495453	Not Available	526	Open in IMG/M
3300008255\|Ga0100403_1078140	All Organisms → Viruses	1335	Open in IMG/M
3300008255\|Ga0100403_1204840	All Organisms → cellular organisms → Bacteria → Proteobacteria	694	Open in IMG/M
3300008255\|Ga0100403_1327184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	510	Open in IMG/M
3300009004\|Ga0100377_1206044	Not Available	767	Open in IMG/M
3300009004\|Ga0100377_1305904	Not Available	585	Open in IMG/M
3300009004\|Ga0100377_1321114	Not Available	567	Open in IMG/M
3300009070\|Ga0066256_1059050	Not Available	1060	Open in IMG/M
3300009424\|Ga0100384_1099213	All Organisms → Viruses → Predicted Viral	1073	Open in IMG/M
3300009424\|Ga0100384_1245672	Not Available	598	Open in IMG/M
3300014060\|Ga0119967_10221367	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300025003\|Ga0210052_1063010	Not Available	916	Open in IMG/M
3300025003\|Ga0210052_1088998	Not Available	727	Open in IMG/M
3300025005\|Ga0210005_1049263	Not Available	1300	Open in IMG/M
3300025016\|Ga0210014_1154635	Not Available	681	Open in IMG/M
3300025016\|Ga0210014_1162805	Not Available	656	Open in IMG/M
3300025016\|Ga0210014_1210187	Not Available	543	Open in IMG/M
3300025017\|Ga0210022_1100443	Not Available	849	Open in IMG/M
3300025017\|Ga0210022_1125291	Not Available	716	Open in IMG/M
3300025018\|Ga0210043_1023570	Not Available	2316	Open in IMG/M
3300025018\|Ga0210043_1027534	Not Available	2080	Open in IMG/M
3300025018\|Ga0210043_1061301	All Organisms → cellular organisms → Bacteria → Proteobacteria	1199	Open in IMG/M
3300025018\|Ga0210043_1071385	All Organisms → Viruses → Predicted Viral	1079	Open in IMG/M
3300025018\|Ga0210043_1113094	Not Available	782	Open in IMG/M
3300025018\|Ga0210043_1144738	Not Available	654	Open in IMG/M
3300025018\|Ga0210043_1155091	All Organisms → cellular organisms → Bacteria → Proteobacteria	622	Open in IMG/M
3300025018\|Ga0210043_1189942	Not Available	535	Open in IMG/M
3300025018\|Ga0210043_1206799	Not Available	502	Open in IMG/M
3300025020\|Ga0210030_1126160	Not Available	728	Open in IMG/M
3300025022\|Ga0210056_1055743	Not Available	1792	Open in IMG/M
3300025022\|Ga0210056_1162023	All Organisms → Viruses	805	Open in IMG/M
3300025035\|Ga0210011_1160653	Not Available	931	Open in IMG/M
3300025036\|Ga0210049_1349289	Not Available	544	Open in IMG/M
3300025124\|Ga0210058_1123477	Not Available	995	Open in IMG/M
3300025124\|Ga0210058_1185798	Not Available	738	Open in IMG/M
3300025139\|Ga0210021_1274064	Not Available	586	Open in IMG/M
3300025148\|Ga0210020_1281676	Not Available	568	Open in IMG/M
3300025150\|Ga0210057_1427353	Not Available	588	Open in IMG/M
3300025158\|Ga0210012_1164621	Not Available	930	Open in IMG/M
3300025288\|Ga0210044_10189240	Not Available	1214	Open in IMG/M
3300025288\|Ga0210044_10190453	All Organisms → Viruses	1208	Open in IMG/M
3300025288\|Ga0210044_10208571	Not Available	1127	Open in IMG/M
3300025288\|Ga0210044_10210057	Not Available	1121	Open in IMG/M
3300025288\|Ga0210044_10457938	Not Available	628	Open in IMG/M
3300025805\|Ga0210006_1139668	Not Available	566	Open in IMG/M
3300025808\|Ga0210037_1114389	Not Available	641	Open in IMG/M
3300025826\|Ga0210033_1099743	Not Available	943	Open in IMG/M
3300025826\|Ga0210033_1148552	Not Available	691	Open in IMG/M
3300025826\|Ga0210033_1173741	Not Available	613	Open in IMG/M
3300025826\|Ga0210033_1180570	Not Available	595	Open in IMG/M
3300025827\|Ga0210031_1170129	Not Available	604	Open in IMG/M
3300025827\|Ga0210031_1186271	Not Available	562	Open in IMG/M
3300025831\|Ga0210015_1211017	Not Available	646	Open in IMG/M
3300025835\|Ga0210039_1095959	All Organisms → cellular organisms → Bacteria → Proteobacteria	1260	Open in IMG/M
3300025835\|Ga0210039_1130997	All Organisms → Viruses → Predicted Viral	1018	Open in IMG/M
3300025835\|Ga0210039_1146066	Not Available	947	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.08%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.08%
Bioremediation	Engineered → Bioremediation	0.92%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	99.08%
Hydrocarbon	Engineered → Bioremediation → Hydrocarbon	0.92%

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	98.17%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.92%
Unclassified	Engineered → Bioremediation → Hydrocarbon → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	98.17%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.92%
Unclassified	Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Aquifer	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer	73.39%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	24.77%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.92%
Wastewater Bioreactor	Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003830	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter	Environmental	Open in IMG/M
3300004212	Groundwater microbial communities from aquifer - Crystal Geyser CG02_land_8/20/14_3.00	Environmental	Open in IMG/M
3300005235	Groundwater microbial communities from aquifer - Crystal Geyser CG08_land_8/20/14_0.20	Environmental	Open in IMG/M
3300005236	Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80	Environmental	Open in IMG/M
3300005237	Groundwater microbial communities from aquifer - Crystal Geyser CG15_big_fil_post_rev_8/21/14_0.20	Environmental	Open in IMG/M
3300007964	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-24	Environmental	Open in IMG/M
3300007965	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-25	Environmental	Open in IMG/M
3300007985	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-05	Environmental	Open in IMG/M
3300007987	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-03	Environmental	Open in IMG/M
3300007988	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-0102	Environmental	Open in IMG/M
3300008001	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-13	Environmental	Open in IMG/M
3300008002	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-14	Environmental	Open in IMG/M
3300008003	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-15	Environmental	Open in IMG/M
3300008004	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-19	Environmental	Open in IMG/M
3300008005	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-09	Environmental	Open in IMG/M
3300008008	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-23	Environmental	Open in IMG/M
3300008009	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-18	Environmental	Open in IMG/M
3300008010	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-21	Environmental	Open in IMG/M
3300008011	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-20	Environmental	Open in IMG/M
3300008018	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-06	Environmental	Open in IMG/M
3300008020	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-22	Environmental	Open in IMG/M
3300008085	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-02	Environmental	Open in IMG/M
3300008086	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-12	Environmental	Open in IMG/M
3300008093	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-17	Environmental	Open in IMG/M
3300008094	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-11	Environmental	Open in IMG/M
3300008095	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-16	Environmental	Open in IMG/M
3300008255	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t	Environmental	Open in IMG/M
3300009004	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01	Environmental	Open in IMG/M
3300009070	Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_1000_biof (version 2)	Engineered	Open in IMG/M
3300009424	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-08	Environmental	Open in IMG/M
3300014060	Freshwater microbial communities from Crystal Geyser, Utah, USA - CG_3.0	Environmental	Open in IMG/M
3300025003	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-08 (SPAdes)	Environmental	Open in IMG/M
3300025005	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.2 um filter (SPAdes)	Environmental	Open in IMG/M
3300025016	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-19 (SPAdes)	Environmental	Open in IMG/M
3300025017	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-20 (SPAdes)	Environmental	Open in IMG/M
3300025018	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)	Environmental	Open in IMG/M
3300025020	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-23 (SPAdes)	Environmental	Open in IMG/M
3300025022	Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80 (SPAdes)	Environmental	Open in IMG/M
3300025033	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-09 (SPAdes)	Environmental	Open in IMG/M
3300025035	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-02 (SPAdes)	Environmental	Open in IMG/M
3300025036	Groundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 (SPAdes)	Environmental	Open in IMG/M
3300025124	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-11 (SPAdes)	Environmental	Open in IMG/M
3300025139	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-17 (SPAdes)	Environmental	Open in IMG/M
3300025148	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-14 (SPAdes)	Environmental	Open in IMG/M
3300025150	Groundwater microbial communities from aquifer - Crystal Geyser CG10_big_fil_rev_8/21/14_0.10 (SPAdes)	Environmental	Open in IMG/M
3300025158	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-04 (SPAdes)	Environmental	Open in IMG/M
3300025288	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter (SPAdes)	Environmental	Open in IMG/M
3300025787	Groundwater microbial communities from aquifer - Crystal Geyser CG01_land_8/20/14_3.00 (SPAdes)	Environmental	Open in IMG/M
3300025805	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/10/14 0.2 um filter (SPAdes)	Environmental	Open in IMG/M
3300025808	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.8 um filter (SPAdes)	Environmental	Open in IMG/M
3300025826	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01 (SPAdes)	Environmental	Open in IMG/M
3300025827	Groundwater microbial communities from aquifer - Crystal Geyser CG03_land_8/20/14_0.80 (SPAdes)	Environmental	Open in IMG/M
3300025831	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-22 (SPAdes)	Environmental	Open in IMG/M
3300025835	Groundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0051980_102209972	3300003830	Groundwater	MLTSAEIVEYLASEGLVDIQPWHDARAISATDPLTRSQFCAGFDESLDTIAANLRARRARFAHPLTPGDPSHD*
Ga0051980_102812722	3300003830	Groundwater	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRARRARFGIPTEDL*
Ga0066631_104594282	3300004212	Groundwater	MPTNAEIVEYLASKGLVDIRPWHDARAISATDPLTRSQFCAGFDESLNAIASNLHWRRARFGIPTEDTEPAIHRRPVP*
Ga0066637_101799152	3300005235	Groundwater	MPTSAEIVEYLASEGLLDIQPWHDAGAISAMDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0066636_103154501	3300005236	Groundwater	MPTSAEIAEYLTSEGLVDIEPWHDAEAISATDPLTRSQFCAGFSESLNTIAANLRAR
Ga0066636_103333442	3300005236	Groundwater	MPTSAEIAEYLASEGLVDIQPWHDARAISAMDPLTRSQFCAGFDESLDLIAANLRARRARFAHPLTPGDPSHD*
Ga0066636_103822771	3300005236	Groundwater	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLNESMESIAANLRAR
Ga0066636_104479822	3300005236	Groundwater	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLDESMDSIAANLRARRARFGIPTEGL*
Ga0066644_101659643	3300005237	Groundwater	MPTSAEIVEYLASEGLLDIQPWHDARAISAMDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0100400_12213181	3300007964	Aquifer	GGMMPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGFNESLDAIAANLRWRRARFGIPTEDL*
Ga0100400_12636442	3300007964	Aquifer	MPTSVEIAEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFSESLDTIAANLRARRARFAH
Ga0100401_12100353	3300007965	Aquifer	PMPTSAEIVEYLASEGLLDIQPWHDAGAISAMDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0100401_12826651	3300007965	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTRSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0100401_12925872	3300007965	Aquifer	MPTSAEIAEYLAFEGLVDIQPWHDAEAISATDPLTRSQFCAGFSESLDTIAANLRARRARFAHPL
Ga0100401_13180612	3300007965	Aquifer	MMPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGFNESLDAIAANLRWRRARFGIPTEDL*
Ga0100381_12328542	3300007985	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGLSESLNTIAANLRARRARFAHPLTPGDPSHD*
Ga0100379_102787563	3300007987	Aquifer	MPTSVEIAEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFSESLDTIAANLRARRARFA
Ga0100379_103547542	3300007987	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTRSQFCAGLNESMESIAANLRARRARFGIPTGD*
Ga0100379_104489442	3300007987	Aquifer	MPTSAEIAEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFDESLDTIAANLRARRARFGIPTGD*
Ga0100402_14994031	3300007988	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDARAISAMDPLTLSQFCAGLDESMDSIAANLRARRARFGIPTDDI*
Ga0100389_12546342	3300008001	Aquifer	MPTSVEIAEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFSESLNTIAANLRARRARFAHPLTPGDPSHD*
Ga0100389_13049751	3300008001	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0100389_13955481	3300008001	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGFNESLDAIAANLRWRRAR
Ga0100390_102472162	3300008002	Aquifer	MMPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLDESMDSIAANLRARRARFGIPTEGL*
Ga0100390_102932421	3300008002	Aquifer	MPTSVEIAEYLTSEGLVDIEPWHDAEAISATDPLTRSQFCAGFSESLDTIAANLRARRARFAHPLTPGDPSHD*
Ga0100390_103459432	3300008002	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDARAISATDPLTRSQFCAGFDESLNAIASNLHWRRARFGIPTEDTEPAIHRRPVP*
Ga0100390_105342791	3300008002	Aquifer	MPTSAEIVEYLASEGLIDIQPWHDAGAISATDPLTRSQFCAGLDESMDSIAANLRARRARFGIPTEDL*
Ga0100391_15158082	3300008003	Aquifer	MPTSVEIAEYLTSEGLVDIEPWHDAEAISATDPLTRSQFCAGFSESLNTIAANLRARRARFAHPLTPGDPSHD*
Ga0100391_15158101	3300008003	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDARAISATDPLTRSQFCAGFDESLDTIAANLRARRARFAHPLTPGDPSHD*
Ga0100395_12613313	3300008004	Aquifer	MMPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLDESMDSIAANLRARRARFGIPTEDL*
Ga0100395_13000762	3300008004	Aquifer	VEYLASEGLLDIQPWHDAGAISAMDPLTRSQFCAGLNESMESIAANLRARRARFGIPTGD
Ga0100395_13597762	3300008004	Aquifer	MPTSAEIAEYLASEGLVDIQPWHDARAISAMDPLTRSQFCAGFDESLDTIAANLRARRARFAHPLTPGDPSHD*
Ga0100385_11474243	3300008005	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFDESLDLIAANLRARRARFAHPLTPGDPSHD*
Ga0100385_12750321	3300008005	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDARAISATDPLTRSQFCAGFDESLDTIAANLRWRRARFGIPTEDL*
Ga0100399_10556175	3300008008	Aquifer	MMPTSAEIVEYLASEGLLDIQPWHDAGAISAMDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0100399_11819993	3300008008	Aquifer	MLTSAEIVEYLASEGLVDIQPWHDARAISATDPLTRSQFCAGFDESLDLIAANLRARRARFAH
Ga0100399_12004951	3300008008	Aquifer	PTSAEIVEYLASEGLLDIQPWHDARAISAMDPLTLSQFCAGLDESMDSIAANLRARRARFGIPTEGL*
Ga0100399_13499471	3300008008	Aquifer	MPTSAEIAEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFSESLDTIAANLRARRAR
Ga0100394_12818962	3300008009	Aquifer	MPTNAEIVEYLASKGLVDIRPWHDAEAISATDPLTRSQFCAGFSESLNTIAANLRARRARFTHPLTPGDPSHD*
Ga0100397_12601531	3300008010	Aquifer	LLDIQPWHDAGAISATDPLTLSQFCAGFSESLDLIAANLRARRARFAHPLTPGDPSHD*
Ga0100396_10695473	3300008011	Aquifer	MPTSVEIAEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFDESLDTIAANLRARRARFAHPLTPGDPSHD*
Ga0100396_12124253	3300008011	Aquifer	AEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLNESMESIAANLRARRARFGIPTGD*
Ga0100382_11410452	3300008018	Aquifer	MPTSAEIAEYLASEGLVDIQPWHDARAISATDPLTRSQFCAGFDESLDTIAANLRARRARFAHPLTPGDPSHD*
Ga0100398_12840681	3300008020	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLNESMESIAANLRARRARFGIPTGD*
Ga0100398_13110672	3300008020	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFDESLDTIAANLRARRARFAHPLTPGDPSHD*
Ga0100378_12566912	3300008085	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDARAISATDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0100388_104692162	3300008086	Aquifer	AEIAEYLTSEGLVDIQPWHDAEAISATDPLTRSQFCAGFSESLNTIAANLRARRARFAHPLTPGDPSHD*
Ga0100388_104936911	3300008086	Aquifer	MMPTSAEIVEYLASEGLLDIQPCHDAGAISATDPLTLSQFCAGLDESMESIAA
Ga0100393_105287991	3300008093	Aquifer	ARGSPMPTSAEIVEYLASEGLLDIQPWHDAGAISAMDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0100387_102756471	3300008094	Aquifer	SPMPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTRSQFCAGLNESMESIAANLRARRARFGIPTGD*
Ga0100387_104897902	3300008094	Aquifer	MPTSAEIVEYLATEGLIDIQPWHDAGAISATDPLTRSQFCAGLDESMDSIAANLRARRARFGIPTEDL*
Ga0100392_14954531	3300008095	Aquifer	MPTSAEIAEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFSESLNTIAANLRARRARFAHPLTPGDPSHD*
Ga0100403_10781404	3300008255	Aquifer	GGIMPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGFNESLDAIAANLRARRARFAHPLTPGDPSHD*
Ga0100403_12048402	3300008255	Aquifer	MMPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESLDAIAANLRARRARFAIPTEDL*
Ga0100403_13271841	3300008255	Aquifer	TSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLDESLDAIAANLRARRARFGIPTEDL*
Ga0100377_12060442	3300009004	Aquifer	MPTNAEIVEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFSESLNTIAANLRARRARFAHPLTPGDPSHD*
Ga0100377_13059042	3300009004	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFSESLDAIAANLRARRARFAHPLTPGDPSHD*
Ga0100377_13211142	3300009004	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGFNESLDAIAANLRWRRARFGIPTEDL*
Ga0066256_10590502	3300009070	Wastewater Bioreactor	MPTSAEIVEYLASEGLLDIQPWRDAGALSAMDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0100384_10992132	3300009424	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGFNESLDAIAANLRARRARFGIPTEDL*
Ga0100384_12456721	3300009424	Aquifer	IVEYLASEGLVDIQPWHDARAISATDPLTRSQFCAGFDESLDLIAANLRARRARFAHPLTPGDPSHD*
Ga0119967_102213672	3300014060	Freshwater	MMPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0210052_10630102	3300025003	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGFNESLDAIAANLRARRARFGIPTEDL
Ga0210052_10889983	3300025003	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDAGAISAMDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL
Ga0210005_10492635	3300025005	Groundwater	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL
Ga0210014_11546353	3300025016	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGFNESLDAIAANLRWRRARFGIPTEDL
Ga0210014_11628052	3300025016	Aquifer	MPTSAEIAEYLASEGLVDIQPWHDARAISAMDPLTRSQFCAGFDESLDLIAANLRARRARFAHPLTPGDPSH
Ga0210014_12101872	3300025016	Aquifer	ASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL
Ga0210022_11004432	3300025017	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLDESMDSIAANLRARRARFGIPTEGL
Ga0210022_11252913	3300025017	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLNESMESIAANLRARRARFGIPTGD
Ga0210043_10235703	3300025018	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDARAISATDPLTRSQFCAGFDESLDTIAANLRWRRARFGIPTEDL
Ga0210043_10275342	3300025018	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTRSQFCAGLNESMESIAANLRARRARFGIPTGD
Ga0210043_10613011	3300025018	Aquifer	DVPVQAGHFCGDVRGGMMPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRARRARFGIPTDDI
Ga0210043_10713853	3300025018	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL
Ga0210043_11130943	3300025018	Aquifer	MPTSAEIVEYLASEGLIDIQPWHDAGAISATDPLTRSQFCAGLDESMDSIAANLRARRARFGIPTEDL
Ga0210043_11447382	3300025018	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTRSQFCAGFDESMESIAANLRWRRARFGIPTEDI
Ga0210043_11550912	3300025018	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESLDAIAANLRARRARFAIPTEDL
Ga0210043_11899421	3300025018	Aquifer	GIPMPTSAEIAEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGLSESLNTIAANLRARRARFAHPLTPGDPSHD
Ga0210043_12067992	3300025018	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDARAISAMDPLTLSQFCAGLDESMDSIAANLRARRARFGIPTDDI
Ga0210030_11261602	3300025020	Aquifer	MLTSAEIVEYLASEGLVDIQPWHDARAISATDPLTRSQFCAGFDESLDTIAANLRARRARFAHPL
Ga0210056_10557433	3300025022	Groundwater	MPTSAEIVEYLASEGLVDIQPWHDARAISATDPLTRSQFCAGFDESLDTIAANLRARRARFAHPLTPGDPSHD
Ga0210056_11620233	3300025022	Groundwater	AEIVEYLASKGLVDIRPWHDARAISATDPLTRSQFCAGFDESLNAIASNLHWRRARFGIPTEDTEPAIHRRPVP
Ga0210026_12950741	3300025033	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAAN
Ga0210011_11606531	3300025035	Aquifer	YLASEGLLDIQPWHDARAISATDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL
Ga0210049_13492891	3300025036	Groundwater	EIAEYLTSEGLVDIQPWHDAEAISATDPLTRSQFCAGFSESLNTIAANLRARRARFAHPLTPGDPSHD
Ga0210058_11234774	3300025124	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTED
Ga0210058_11857982	3300025124	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDARAISAMDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL
Ga0210021_12740642	3300025139	Aquifer	MPTSAEIAEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFSESLDTIAANLRARRARFAHPLTPGDPSHD
Ga0210020_12816762	3300025148	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDARAISATDPLTLSQFCAGLDESMESIAANLRWRR
Ga0210057_14273531	3300025150	Groundwater	MPTSAEIVEYLASEGLVDIQPWHDAGAISAMDPLTLSQFCAGLDESMESIAANLRWRR
Ga0210012_11646211	3300025158	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRWRRARFGI
Ga0210044_101892403	3300025288	Groundwater	MLTSAEIVEYLASEGLVDIQPWHDARAISATDPLTRSQFCAGFDESLDTIAANLRARRARFAHPLTPGDPSHD
Ga0210044_101904533	3300025288	Groundwater	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLNESMESIAANLRARRARFAHPLTPGDPSHD
Ga0210044_102085711	3300025288	Groundwater	PTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLDESLDAIAANLRARRARFGIPTEDL
Ga0210044_102100574	3300025288	Groundwater	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRARRARFGIPTDDL
Ga0210044_104579381	3300025288	Groundwater	TSVEIAEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFSESLDTIAANLRARRARFAHPLTPGDPSHD
Ga0210047_10538081	3300025787	Groundwater	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESI
Ga0210006_11396682	3300025805	Groundwater	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRARRARFGIPT
Ga0210037_11143891	3300025808	Groundwater	MPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLNESMESIAANLRARRARFGIPTEDL
Ga0210033_10997431	3300025826	Aquifer	ARGSPMPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLNESMESIAANLRARRARFGIPTGD
Ga0210033_11485522	3300025826	Aquifer	MPTSAEIVEYLASEGLVDIQPWHDARAISATDPLTRSQFCAGFDESLDTIAANLRWRRARFGIPTEDL
Ga0210033_11737412	3300025826	Aquifer	MPTSAEIAEYLASEGLVDIQPWHDARAISAMDPLTRSQFCAGFDESLDTIAANLRARRARFAHPLTPGDPSHD
Ga0210033_11805701	3300025826	Aquifer	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRWRRAR
Ga0210031_11701291	3300025827	Groundwater	MPTSVEIAEYLTSEGLVDIEPWHDAEAISATDPLTRSQFCAGFSESLNTIAANLRARRARFAHPLTPGDPSHD
Ga0210031_11862712	3300025827	Groundwater	MPTSAEIVEYLASEGLLDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRARRA
Ga0210015_12110171	3300025831	Aquifer	MPTSAEIAEYLASEGLVDIQPWHDARAISATDPLTRSQFCAGFDESLDTIAANLRARRARFAHPLTPGDPSHD
Ga0210039_10959591	3300025835	Groundwater	TRKPVRTARGSPMPTSAEIVEYLASEGLLDIQPWHDARAISATDPLTRSQFCAGLNESMESIAANLRARRARFGIPTEDL
Ga0210039_11309971	3300025835	Groundwater	FCGDVRGGMMPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTRSQFCAGLDESMDSIAANLRARRARFGIPTEGL
Ga0210039_11460661	3300025835	Groundwater	FCGDVRGGMMPTSAEIVEYLASEGLVDIQPWHDAGAISATDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088268

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences