3300008886: Microbial communities associated with unicellular green alga Micrasterias crux-melitensis, Germany - (MZCH: 98)

Overview

Basic Information

• IMG/M Taxon OID: 3300008886
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118519 | Gp0137008 | Ga0115930
• Sample Name: Microbial communities associated with unicellular green alga Micrasterias crux-melitensis, Germany - (MZCH: 98)
• Sequencing Status: Permanent Draft
• Sequencing Center: HPI Heinrich-Pette-Institut
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 268162588
• Sequencing Scaffolds: 27
• Novel Protein Genes: 30
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → unclassified Salmonella → Salmonella sp. hn-f5	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Associated With Unicellular Green Alga Micrasterias Crux-Melitensis, Germany - (Mzch: 98)
• Type: Host-Associated
• Taxonomy: Host-Associated → Microbial → Bacteria → Unclassified → Unclassified → Micrasterias Crux-Melitensis (Mzch 98) Associated → Microbial Communities Associated With Unicellular Green Alga Micrasterias Crux-Melitensis, Germany - (Mzch: 98)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant corpus

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): 53.560155
  • Long. (^o): 9.859606
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002471	Metagenome / Metatranscriptome	556	Y
F002994	Metagenome / Metatranscriptome	514	Y
F003406	Metagenome / Metatranscriptome	488	Y
F006745	Metagenome	365	Y
F008911	Metagenome / Metatranscriptome	326	Y
F012765	Metagenome / Metatranscriptome	277	Y
F015450	Metagenome / Metatranscriptome	254	N
F020862	Metagenome / Metatranscriptome	221	Y
F024880	Metagenome / Metatranscriptome	204	Y
F029075	Metagenome / Metatranscriptome	189	Y
F030808	Metagenome / Metatranscriptome	184	Y
F039184	Metagenome / Metatranscriptome	164	Y
F048829	Metagenome / Metatranscriptome	147	Y
F050219	Metagenome / Metatranscriptome	145	Y
F060695	Metagenome	132	Y
F062644	Metagenome / Metatranscriptome	130	Y
F063479	Metagenome / Metatranscriptome	129	Y
F073034	Metagenome / Metatranscriptome	120	Y
F074492	Metagenome / Metatranscriptome	119	Y
F074960	Metagenome / Metatranscriptome	119	Y
F075003	Metagenome / Metatranscriptome	119	Y
F080249	Metagenome / Metatranscriptome	115	Y
F080441	Metagenome / Metatranscriptome	115	Y
F084503	Metagenome	112	Y
F087448	Metagenome / Metatranscriptome	110	Y
F096850	Metagenome / Metatranscriptome	104	N
F099086	Metagenome / Metatranscriptome	103	N
F102772	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115930_1000085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	196644
Ga0115930_1000113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	165160
Ga0115930_1000167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	126083
Ga0115930_1000327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	70744
Ga0115930_1000799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	31762
Ga0115930_1001015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25055
Ga0115930_1005825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	5607
Ga0115930_1013820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	2655
Ga0115930_1017449	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	2183
Ga0115930_1017806	Not Available	2148
Ga0115930_1020497	All Organisms → cellular organisms → Bacteria → Proteobacteria	1921
Ga0115930_1035886	Not Available	1257
Ga0115930_1046946	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea	1018
Ga0115930_1047433	Not Available	1010
Ga0115930_1060348	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	837
Ga0115930_1060489	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	836
Ga0115930_1060952	Not Available	831
Ga0115930_1066168	Not Available	780
Ga0115930_1070973	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	741
Ga0115930_1084703	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	648
Ga0115930_1095252	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	594
Ga0115930_1096007	Not Available	590
Ga0115930_1101263	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea	568
Ga0115930_1106284	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	548
Ga0115930_1108504	Not Available	540
Ga0115930_1111861	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	528
Ga0115930_1115362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → unclassified Salmonella → Salmonella sp. hn-f5	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115930_1000085	Ga0115930_100008560	F102772	MSNDASRLRAVSFAASVYLFFEAGLAAQTVDELPDPQEPMLAEPGDWAADFNEAQLACYQGSMRACDSIWLSERVLLDSFLDHYGRTCGGRVDLREIRRANLNCTEAFPGHD*
Ga0115930_1000113	Ga0115930_100011350	F060695	MRASASLLWLGAAVTLSAFASAYVVAMFVADRLADCTTPAVLPVAYSVMLGYAIVGAQIGINNLVNSGRPPPYLEELQWASFVLIGLGMVWVGFAYSIWLVVGFLMLFFVPLGAVYLIVGVPVFAAVMRLYERAVPDLDAASAWPATVLAVAPFVVFPLRDIEARCGVLQ*
Ga0115930_1000167	Ga0115930_100016738	F074960	MRDVDDGRLEAQRIALRGDAVDELGGDDVDAGETAAIEIVEVVQTARCAGPSIA*
Ga0115930_1000327	Ga0115930_100032739	F080249	MADDKSKRGKPDSYLISFKEKYEFEYAAKQLQKQVAGTTRQEARDALTVAAKKISPSEGREKIMRAARKNLRD*
Ga0115930_1000799	Ga0115930_10007995	F075003	MLRLAIASLLLPALSLPASANWTRAQREQFLGQCVESCQSTLKLPDSKRRVCDATCGCVADQAETQVTPADMYALDEAAAAGRTTETMQKIRGFFPACAKRAARMP*
Ga0115930_1001015	Ga0115930_100101523	F039184	MDADWGFMRACDLARTADESFKLAWIAEIEAAWQVTDLDHGDFGFILAMADGRRLYWRYTSEDTGAGRPEDLAVTELAPGEMPNGDAPWSRPEALNKRLAVLRRLA*
Ga0115930_1005825	Ga0115930_10058259	F080441	MLALGGCAVVNSAPSSQEVVQLRDVRDQCLMQNAIRLDDGRSDPQAIAASVMAACQSENQALITAIAGPDGFRQSEIARQIQQNSQQAATQYVLQVRAARTRS*
Ga0115930_1013820	Ga0115930_10138204	F006745	VRTSQRAPRASSAIAVYVIILIAFQVFLLTVAVEALATDDESLAWATAGVSVTLAAGSAVLFRYLRP*
Ga0115930_1017449	Ga0115930_10174493	F030808	MLNLNLSALQNQEFIVGIAVAAIMVSALVVSSLFRNVALALAAGGVVLLYLQGGVPSLMATSKLLENEIRTLPDFSNGLMVGLAISAVMLVGMRQRSV*
Ga0115930_1017806	Ga0115930_10178064	F024880	MSVAITAQVPVAPTAPEAASPQVGQGTGPTGEQGVADFAKARVDVADANVAELTNSVASSGEMMGKLREFIDKSHQTDMKNQATRAKQRAAAADAETDIATLDTLGSLGNVGSLSQFNPISHSGSFGQHGSFNQLSSLGLPPGPASAPLGSGGGFEGPGRLSAMSAKMTNDLMDGAIHRMWTQVVVHGTTSVTKTVMTLLKGQ*
Ga0115930_1020497	Ga0115930_10204971	F084503	HLRQFKNSGCNRVTFRISTMGDPMAVFRRAVEEVLPFV*
Ga0115930_1029592	Ga0115930_10295922	F003406	MNEAAEECQRAFGIVCSFIGTRDLVQEHIAFRVWPLAEKWEMPQETIKEADEGGLIRFKYTFKFGDKFVEPDDDWLKSIENLSDELLGTYSKAEDTAMSAAFGGRKKKRLNRVFDAIGFVYPDYCYPIRRQKRKNTTSAKEE
Ga0115930_1035886	Ga0115930_10358863	F087448	MTNIPVTASGDQKPETPATPQQQTQNPPKPADKPSEQQK*
Ga0115930_1046946	Ga0115930_10469462	F002471	TSHKAPIPAKEKGKAPMATSAKRNHAFLYHDRRQTRNVSHDAFDSYVYDSHAMFAPSSSYVYDRNVTRRNVVPKRNVANVHRKVVNEPSTIYCALNASFAICRKDRKVIARKLGAKCKGDKTCIWVPKEIVTNLVGPNKSWVPKSQA*
Ga0115930_1047433	Ga0115930_10474332	F029075	LVAAQVQDFGPAHATATTEFLAASTAEGGNEYGGSVSEFFDFTDSGSSVEWTEESSEEDLDYFAALDVAAAEASPHTADASNVPGPGTGRRRRRAVAKRRVSTEEGARLRVSRAGRQELLSLPAAASTGEGELRSLFAGEELRIMLFNYREMGIIPKVEPM*
Ga0115930_1060348	Ga0115930_10603481	F015450	TEGLLAETEAKISELNSKLIGQSKQFEQEKLELNSKLEAEVQANSNLKKSLTSLQNKCLNFSNNCIQQLKKIFYSVGASSGKFTPSDEDLPKAFDHIEAEIEELDEVIAGHGDFCAWVASRGTAAAFLKAGCDHGKIVNRPNFTLSPSILDDIPDLARSISNRFVKMIWTKGGREKAGDEARSHLEPVRNHTLCLPLPSSSILTYNNLIHVG*
Ga0115930_1060489	Ga0115930_10604891	F050219	MSEDKKSCSESKLSLSEEMHLGFLQSIAKTNTEKITREILEG*
Ga0115930_1060952	Ga0115930_10609522	F008911	VMRRLLSRFGDWVVAHPVWWGLGCGVVLVLIGLVFEVAPVVVLAAGVLIGALNILHARRRGYCPLPTDGTETT*
Ga0115930_1061923	Ga0115930_10619231	F099086	SCPPSDPTEASPGPQPKDDDEIKKMAEAIMDQVVDRLLNEAAEVVLRED*
Ga0115930_1066168	Ga0115930_10661682	F096850	DSKTSEVLSPSAIIGTSKNEKVPAATPKRKRMANVLDVLETIISSSTPPKKAAVTFETTAEAEAGPSEPSKAKTLESEAKKITKPTFAEGTGVVTPEASPIIRDYIFRHASGKKLSEKEEQEAQHYAQKLKYPKGALIFNGSGEEDFLYCLPDSKEISVCREMSRSFGFPTLEDGLSVLSKNDLADSLAYNSLKVRQMEFLYFC*
Ga0115930_1070973	Ga0115930_10709732	F002471	APMASSAKKNHAFMYHDRRQTRNAYRSYNAYDDFDSHAMFASSSSYMHGRNMSRRNAIHHVPRKNIIHAPRKVMNEPSTIYRALNASFAICRKDRKIVARKLGAKCKGDKTCIWVPKDICTNLVGPNKSWVPKSQA*
Ga0115930_1084703	Ga0115930_10847031	F074492	MLLSKALQMQQDLEDKKHEIIIGNLENKIKEQSDAFEKKNFELQAAEGLLAEAEAKISELNTKLLRQSEQFEREKQDLNA
Ga0115930_1084703	Ga0115930_10847032	F048829	KRL*PQRQRKEEIADEASEDEAFAFQNLVGEHLTKAEIEELKEYAQSCGYKPGALLFGGVDDEKLECIRDQTGAKVVSTLSKSIGFPKLETDISRYRRQHVVGSLFYSNFKVNDLSLNLYCF*
Ga0115930_1095252	Ga0115930_10952521	F012765	ERSHRFTMEELDNQRRQLQESSDEVTRLAQLLSAKDTTIKGLRASKKSIAQELETAQQAVKVAEEAAVIFKAQRDKALDKAIRAGRILMRRPGVVVPEDIRADVNAAPDSSSRPSSSVVPEKDIGK*
Ga0115930_1096007	Ga0115930_10960071	F073034	MADNEQRDSATQQTEREALTHDTEEVTPEQQEWFRLAGFSRIEWQRLVYARWRHRQGLLTDTPQS*
Ga0115930_1101263	Ga0115930_11012631	F002471	KSNSCVEHVMICNRCKDFNVDACSEHLVCISKLNDEVASLNAQLKTSKSEFDKLKFARDAYTIGRHPSIKDGLGFKREVKNLTSHKASISAKEKGKAPMASSAQKNHAFMYHDRRHSRNVYRSYDAFDSHAMVASSSSIMHDRNLAKRNVINYMPRRNVVHVSRKIINEPSTIYHACNASFAICRKDKK
Ga0115930_1106284	Ga0115930_11062841	F020862	SLKELQGKCLSFGSRCVQRLKDVFHSVGASSAKFTPLAENLTNTLEYIEGEVDALDEVIGGHADFCALVASRGTATAFLKAGCTHGNIVNRPNFSLSASDLIDIPSLARSIGNRFMTQIWVSGGRKMAGDEARSHLKPVRNLCLLLLPSPMKFAPFLFCCLVYTG*
Ga0115930_1108504	Ga0115930_11085042	F063479	MSARNWAETHWIARSTRGGGRPKSGEVDLGPPVKSGRVRGLGKLHGLLAELAEALVGLEGGWSGLATVAEALAAMAGGNTLAGAKERWLADEGECG
Ga0115930_1111861	Ga0115930_11118611	F062644	LGDKVLIFRFRLSTPPSRRLSVTAESLDPLNSADTCPAPEDVAGEDLARVKSISHCPAPEGVAGDDPAQVGSANYDPAPEGVRAGSPSCTSMDVHAGSPPHSGCMVVAQALDQGVALEGSVPADRVLGSVDGTELIPAGSLQAASGGGLTPGYQLISPDLGIPSFFSNLQVL*
Ga0115930_1115362	Ga0115930_11153621	F002994	TIANLRNENAKLIAKVDSNVCDDSISNLRNDNANLLAKIEKLNDSLASLKIENEKLIAKAKELDVCNASISNLRDNNDILRAKIVELNSCKPSTSTIEHVTICTRCRDINVDAIHDHLALIKQQNDHIAQLSAKINEHDLENEKFKFARSMLYSGRRPGIKDGIGFQQGDNV