NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F074960

Metagenome / Metatranscriptome Family F074960

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F074960
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 55 residues
Representative Sequence MRDVDDGRLEAQRIALRGDAVDELGGDDVDARQAAIIEIVEVVQTARCAGASIA
Number of Associated Samples 113
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 60.50 %
% of genes near scaffold ends (potentially truncated) 42.86 %
% of genes from short scaffolds (< 2000 bps) 93.28 %
Associated GOLD sequencing projects 106
AlphaFold2 3D model prediction Yes
3D model pTM-score0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (99.160 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(15.966 % of family members)
Environment Ontology (ENVO) Unclassified
(39.496 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(44.538 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.68%    β-sheet: 0.00%    Coil/Unstructured: 57.32%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.25
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF12697Abhydrolase_6 12.61
PF00561Abhydrolase_1 1.68
PF01541GIY-YIG 0.84
PF08386Abhydrolase_4 0.84
PF07885Ion_trans_2 0.84
PF13458Peripla_BP_6 0.84
PF02371Transposase_20 0.84
PF00144Beta-lactamase 0.84
PF07784DUF1622 0.84
PF01425Amidase 0.84
PF00005ABC_tran 0.84
PF02798GST_N 0.84

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 119 Family Scaffolds
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.84
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 0.84
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.84
COG2367Beta-lactamase class ADefense mechanisms [V] 0.84
COG3547TransposaseMobilome: prophages, transposons [X] 0.84
COG4828Uncharacterized membrane proteinFunction unknown [S] 0.84


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms99.16 %
UnclassifiedrootN/A0.84 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002568|C688J35102_120082729All Organisms → cellular organisms → Bacteria872Open in IMG/M
3300005330|Ga0070690_101290963All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium585Open in IMG/M
3300005331|Ga0070670_101871263All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria553Open in IMG/M
3300005334|Ga0068869_101246456All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria655Open in IMG/M
3300005336|Ga0070680_100605044All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017941Open in IMG/M
3300005343|Ga0070687_100152811All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00171357Open in IMG/M
3300005344|Ga0070661_100574982All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria909Open in IMG/M
3300005344|Ga0070661_100636673All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria865Open in IMG/M
3300005354|Ga0070675_100439612All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1168Open in IMG/M
3300005356|Ga0070674_101080425All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria708Open in IMG/M
3300005458|Ga0070681_10384597All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1314Open in IMG/M
3300005529|Ga0070741_10271010All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1607Open in IMG/M
3300005533|Ga0070734_10450393All Organisms → cellular organisms → Bacteria → Proteobacteria734Open in IMG/M
3300005534|Ga0070735_10223830All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium1146Open in IMG/M
3300005546|Ga0070696_100919370All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria727Open in IMG/M
3300005548|Ga0070665_100009832All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium9668Open in IMG/M
3300005554|Ga0066661_10482144All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium752Open in IMG/M
3300005563|Ga0068855_100294732All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1797Open in IMG/M
3300005566|Ga0066693_10440255All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium533Open in IMG/M
3300005607|Ga0070740_10135333All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1080Open in IMG/M
3300005617|Ga0068859_102306464All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria593Open in IMG/M
3300005617|Ga0068859_102484385All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria570Open in IMG/M
3300005618|Ga0068864_101700935All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria636Open in IMG/M
3300005712|Ga0070764_10607835All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria667Open in IMG/M
3300005842|Ga0068858_101188243All Organisms → cellular organisms → Bacteria750Open in IMG/M
3300005937|Ga0081455_10000165All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD001781987Open in IMG/M
3300006050|Ga0075028_100267464All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium944Open in IMG/M
3300006095|Ga0097679_1050459All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → Belnapia rosea1763Open in IMG/M
3300006353|Ga0075370_10810836All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium571Open in IMG/M
3300008886|Ga0115930_1000167All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria126083Open in IMG/M
3300009089|Ga0099828_11411529All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria615Open in IMG/M
3300009098|Ga0105245_11584379All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria707Open in IMG/M
3300009176|Ga0105242_12844839All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300009553|Ga0105249_12238900All Organisms → cellular organisms → Bacteria619Open in IMG/M
3300010359|Ga0126376_11135882All Organisms → cellular organisms → Bacteria → Proteobacteria792Open in IMG/M
3300010360|Ga0126372_12058067All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300010361|Ga0126378_11546059All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300010362|Ga0126377_10735136All Organisms → cellular organisms → Bacteria1042Open in IMG/M
3300010376|Ga0126381_104211998All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300010399|Ga0134127_10517174All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1208Open in IMG/M
3300010399|Ga0134127_10880469All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria949Open in IMG/M
3300010403|Ga0134123_12899277All Organisms → cellular organisms → Bacteria → Proteobacteria548Open in IMG/M
3300011119|Ga0105246_11727732All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales595Open in IMG/M
3300011269|Ga0137392_11435663All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300012203|Ga0137399_11721127All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300012212|Ga0150985_113662805All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria873Open in IMG/M
3300012357|Ga0137384_11095052All Organisms → cellular organisms → Bacteria → Proteobacteria638Open in IMG/M
3300012479|Ga0157348_1010113All Organisms → cellular organisms → Bacteria → Proteobacteria656Open in IMG/M
3300012898|Ga0157293_10078609All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017804Open in IMG/M
3300012900|Ga0157292_10436680All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales504Open in IMG/M
3300012907|Ga0157283_10102087All Organisms → cellular organisms → Bacteria771Open in IMG/M
3300012909|Ga0157290_10313409All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300012943|Ga0164241_10036912All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00173659Open in IMG/M
3300012943|Ga0164241_11222691All Organisms → cellular organisms → Bacteria → Proteobacteria555Open in IMG/M
3300012955|Ga0164298_10371594All Organisms → cellular organisms → Bacteria913Open in IMG/M
3300012961|Ga0164302_11067230All Organisms → cellular organisms → Bacteria → Proteobacteria635Open in IMG/M
3300012971|Ga0126369_12313166All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales624Open in IMG/M
3300012987|Ga0164307_10995820All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales682Open in IMG/M
3300013100|Ga0157373_10334358All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1079Open in IMG/M
3300013296|Ga0157374_11354481All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales734Open in IMG/M
3300014154|Ga0134075_10550652All Organisms → cellular organisms → Bacteria → Proteobacteria520Open in IMG/M
3300014166|Ga0134079_10268361All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales745Open in IMG/M
3300014497|Ga0182008_10290516All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales853Open in IMG/M
3300014745|Ga0157377_10840653All Organisms → cellular organisms → Bacteria681Open in IMG/M
3300014969|Ga0157376_10604348All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1092Open in IMG/M
3300015372|Ga0132256_100651392All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1169Open in IMG/M
3300015374|Ga0132255_100875505All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1342Open in IMG/M
3300016445|Ga0182038_10808684All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales822Open in IMG/M
3300017966|Ga0187776_10996910All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales615Open in IMG/M
3300019362|Ga0173479_10456292All Organisms → cellular organisms → Bacteria → Proteobacteria633Open in IMG/M
3300019882|Ga0193713_1166808All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales582Open in IMG/M
3300020027|Ga0193752_1098489All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1199Open in IMG/M
3300020070|Ga0206356_10703167All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales543Open in IMG/M
3300020078|Ga0206352_10762281All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales650Open in IMG/M
3300021444|Ga0213878_10521228All Organisms → cellular organisms → Bacteria → Proteobacteria524Open in IMG/M
3300021938|Ga0213847_1119988All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales712Open in IMG/M
3300022467|Ga0224712_10696434All Organisms → cellular organisms → Bacteria → Proteobacteria500Open in IMG/M
3300022878|Ga0247761_1089129All Organisms → cellular organisms → Bacteria → Proteobacteria618Open in IMG/M
3300024323|Ga0247666_1118183All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300025302|Ga0207426_1047866All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1287Open in IMG/M
3300025321|Ga0207656_10594628All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium565Open in IMG/M
3300025901|Ga0207688_10042422All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00172533Open in IMG/M
3300025904|Ga0207647_10342959All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017846Open in IMG/M
3300025912|Ga0207707_10917367All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017723Open in IMG/M
3300025913|Ga0207695_11672668All Organisms → cellular organisms → Bacteria → Proteobacteria517Open in IMG/M
3300025918|Ga0207662_10064438Not Available2205Open in IMG/M
3300025944|Ga0207661_11247493All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017683Open in IMG/M
3300025949|Ga0207667_10126315All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2634Open in IMG/M
3300025961|Ga0207712_10258934All Organisms → cellular organisms → Bacteria1410Open in IMG/M
3300026035|Ga0207703_10848181All Organisms → cellular organisms → Bacteria874Open in IMG/M
3300026041|Ga0207639_11650791All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria601Open in IMG/M
3300026095|Ga0207676_12551168All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300026309|Ga0209055_1146371All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017827Open in IMG/M
3300027787|Ga0209074_10034587All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00171465Open in IMG/M
3300027835|Ga0209515_10256713All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1003Open in IMG/M
3300028381|Ga0268264_11879512All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017608Open in IMG/M
3300031057|Ga0170834_113602461All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017531Open in IMG/M
(restricted) 3300031197|Ga0255310_10163544All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria615Open in IMG/M
3300031199|Ga0307495_10148011All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales605Open in IMG/M
3300031226|Ga0307497_10190713All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017881Open in IMG/M
3300031241|Ga0265325_10307198All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017707Open in IMG/M
3300031543|Ga0318516_10166735All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00171266Open in IMG/M
3300031679|Ga0318561_10505477All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300031716|Ga0310813_10920826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017793Open in IMG/M
3300031716|Ga0310813_12130140All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300031751|Ga0318494_10215303All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00171097Open in IMG/M
3300031769|Ga0318526_10432389All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300031835|Ga0318517_10378615All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017639Open in IMG/M
3300031902|Ga0302322_100973092All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00171021Open in IMG/M
3300031938|Ga0308175_100487985All Organisms → cellular organisms → Bacteria1307Open in IMG/M
3300031939|Ga0308174_10404659All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00171100Open in IMG/M
3300031946|Ga0310910_10240474All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00171414Open in IMG/M
3300032012|Ga0310902_11174802All Organisms → cellular organisms → Bacteria539Open in IMG/M
3300032144|Ga0315910_10046247All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00173172Open in IMG/M
3300032896|Ga0335075_10826372All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales863Open in IMG/M
3300033412|Ga0310810_11121624All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium651Open in IMG/M
3300033412|Ga0310810_11188849All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria620Open in IMG/M
3300034664|Ga0314786_167145All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300034818|Ga0373950_0025776All Organisms → cellular organisms → Bacteria → Proteobacteria1064Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil15.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.88%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere5.88%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.04%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere4.20%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.36%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil3.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.36%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere3.36%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.52%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere2.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.52%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.52%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.52%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.52%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.68%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.68%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.84%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.84%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.84%
Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil0.84%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.84%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.84%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.84%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.84%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.84%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.84%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.84%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.84%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.84%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.84%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.84%
Micrasterias Crux-Melitensis (Mzch 98) AssociatedHost-Associated → Microbial → Bacteria → Unclassified → Unclassified → Micrasterias Crux-Melitensis (Mzch 98) Associated0.84%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.84%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.84%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.84%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.84%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.84%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.84%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.84%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.84%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.84%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.84%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.84%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.84%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.84%
Wastewater BioreactorEngineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor0.84%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005607Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2EnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006095Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_biof - 1398105538000 (version 2)EngineeredOpen in IMG/M
3300006353Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5Host-AssociatedOpen in IMG/M
3300008886Microbial communities associated with unicellular green alga Micrasterias crux-melitensis, Germany - (MZCH: 98)Host-AssociatedOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012479Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.yng.030610EnvironmentalOpen in IMG/M
3300012898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1EnvironmentalOpen in IMG/M
3300012900Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1EnvironmentalOpen in IMG/M
3300012907Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1EnvironmentalOpen in IMG/M
3300012909Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1EnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300019882Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2EnvironmentalOpen in IMG/M
3300020027Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1EnvironmentalOpen in IMG/M
3300020070Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300021444Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02EnvironmentalOpen in IMG/M
3300021938Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - EE:C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022467Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022878Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L111-311C-4EnvironmentalOpen in IMG/M
3300024323Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07EnvironmentalOpen in IMG/M
3300025302Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes)Host-AssociatedOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027835Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031199Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_SEnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031241Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaGHost-AssociatedOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031902Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300034664Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034818Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
C688J35102_12008272923300002568SoilMRDVDDGRLEAQRIALRGDAVDELGGDDVDAREAAVIEIVEVVQTARCAGASIA*
Ga0070690_10129096333300005330Switchgrass RhizosphereRLEAQRIALRGDAVDELGGDDVDARQAAVIEIVEVVQTARCAGASIA*
Ga0070670_10187126313300005331Switchgrass RhizosphereVRDVDDGGLEAQRVALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA*
Ga0068869_10124645623300005334Miscanthus RhizosphereMRDEDDGGLEAQRIALRGDAVDELGGDDVDPGQAAAIEIVEVVQTARCAGPSIR*
Ga0070680_10060504423300005336Corn RhizosphereMRDEDDGGLEAQRIALRGDTIDELGGDDVDAGEAAVIEIVEVVQTARCAGPSIR*
Ga0070687_10015281123300005343Switchgrass RhizosphereMRDVDDGRLEAQRIALRGDAVDELGGDDIDARQAAVIEIVEVVQTARCAGASIA*
Ga0070661_10057498223300005344Corn RhizosphereMRDVDDGRLEAQRIALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA*
Ga0070661_10063667323300005344Corn RhizosphereMRDEDDRGLEAQRITLRRDTIDELGGDDVDAGKAAVIEIVEVVQTARCAGPSIR*
Ga0070675_10043961213300005354Miscanthus RhizosphereVRDIDDGGLEAQRVALRGDAVDELGGDDVDARQAAIIEIVEVVQTARCAGTSIA*
Ga0070674_10108042523300005356Miscanthus RhizosphereVRDVDDGRLEAQRIALRGDAVDELGGDDVDPGEAAAIEIVEVVQTARCAGPSIA*
Ga0070681_1038459723300005458Corn RhizosphereMRDEDDRRFEAERIALCGDTVDELGGDDVDAGEAAVIEIVEVVQTARCAGPSIR*
Ga0070741_1027101033300005529Surface SoilMRDVDDRGLEAQRVALRGDAVDELGGDDVDPGQAAVIEIVEVVQTARCAGPSIR
Ga0070734_1045039333300005533Surface SoilDGGLEAQRIALRGDAVDELGGDDVDAGQAAVIEIVEVVQTARCAGASIR*
Ga0070735_1022383033300005534Surface SoilDGGLEAQRIALRGDAVDETGGDDIDARDAAAVEVMKVVQTARCA*
Ga0070696_10091937023300005546Corn, Switchgrass And Miscanthus RhizosphereMRDEDDRRFEAERIALCGDTVDELGGDDVDAGEAAIIEIVEVVQTARCAGPSIR*
Ga0070665_10000983283300005548Switchgrass RhizosphereVRDIDDGGLEAQRVALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA*
Ga0066661_1048214413300005554SoilAQRITLRFDAFGELRRDDVDARKAAAIEIVEVVQTARCAGPSIR*
Ga0068855_10029473233300005563Corn RhizosphereLDLGRGAVLDRMRDEDDGGLEAQRIALRGDAVDELGGDDVDAREAAVIEIVEVVQTARCAGPSIR*
Ga0066693_1044025513300005566SoilDVDHGRIEAQRFALRRHAVDELGGDDVDARQAAAIEIVEVVQTARCAGPSIA*
Ga0070740_1013533333300005607Surface SoilLDLGRGAVLDRMRHVDHGRLEAQRLGLRGDAVDELGGDDVDTGNAAAIEIVEVVQTARCAGPSIR*
Ga0068859_10230646413300005617Switchgrass RhizosphereLGGGAVLDRMRDVDDGGLEAQRIALRGDAVDELGGDDVDARQAAVIEIVEVVQTARCAGASIA*
Ga0068859_10248438523300005617Switchgrass RhizosphereLGGGAVLDRMRDVDDGGLEAQRIALRGDAVDELGGDDVDAGKAAAIEIVEVVQTARCAGPSIA*
Ga0068864_10170093513300005618Switchgrass RhizosphereGAVLDRVRDVDDGGLEAQRVALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA
Ga0070764_1060783523300005712SoilVRDVDDGGLEAQRIALRGDAVDELGGDDVDAGEAAVIEIVEVVQTARCAGASIR*
Ga0068858_10118824323300005842Switchgrass RhizosphereMRDVDDGRLEAQRIALRGDAVDELGGDDVDAGKAAAIEVVEVVQTARCAGPSIR*
Ga0081455_10000165383300005937Tabebuia Heterophylla RhizosphereVRHIDDGGLETERLALRLDTIDEASGDDVDAGEAASVEIMKVVQTARCAGASIA*
Ga0075028_10026746423300006050WatershedsMRDVDDGGLEAQRIALRGDALGELGRDDIDAGETAAIEIVEVVQTARCAGPSIA*
Ga0097679_105045913300006095Wastewater BioreactorVRDVDDGRLEAQRVALRCDAFDKTGGDDVDAGQAASVEAIEVVQTARCAGPSI
Ga0075370_1081083613300006353Populus EndosphereLEAQRIALRGDAVDELGGDDVDARQAAVIEIVEVVQTARCAGPSIA*
Ga0115930_1000167383300008886Micrasterias Crux-Melitensis (Mzch 98) AssociatedMRDVDDGRLEAQRIALRGDAVDELGGDDVDAGETAAIEIVEVVQTARCAGPSIA*
Ga0099828_1141152923300009089Vadose Zone SoilMGDVDDGGLEAQRIALRGDTLGELGRDDVDAGEAAAIEIVEVVQTARCAGPSIA*
Ga0105245_1158437923300009098Miscanthus RhizosphereMRDVDDGGLEAQRVALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCARASIA*
Ga0105242_1284483923300009176Miscanthus RhizosphereRLDLGGGAVLDRMRDVDDGRLEAQRIALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA*
Ga0105249_1223890023300009553Switchgrass RhizosphereMRDVDDGRLEAQRIALRGDAVDELGGDDVDPGEAAAIEIVEVVQTARCAGPSIR*
Ga0126376_1113588223300010359Tropical Forest SoilMRDVDDGGLEAQRIALRLDALGELGGDDVDARQAAAIEIVEVVQTARCTGPSIR*
Ga0126372_1205806723300010360Tropical Forest SoilMRDVDDAGLEAQRIALRLDALGELGGDDVDARQAAAIEIVEVVQTARCTGPSIR*
Ga0126378_1154605933300010361Tropical Forest SoilVRDVDDGRLEAQRIALRGDAVDELGGDDVDAGEAAVIEIVEVVQTARCAGPSIR*
Ga0126377_1073513633300010362Tropical Forest SoilMRDVDDAGLEAQRIALRFDAFGEFRGDDVDARQAAAIEIVEVVQTARCAGPSIR*
Ga0126381_10421199823300010376Tropical Forest SoilMRDVDDGRLEAQRIALRGDTIDELGGDDVDAGQAAVIEIVEVVQTARCAGPSIR*
Ga0134127_1051717413300010399Terrestrial SoilLFFRAVLDRVRDVDDGGLEAQRIALRGDALGELGGDDVDARQAAAIEIVEVVQTARCAGPSIR*
Ga0134127_1088046923300010399Terrestrial SoilMRDEDDGGLEAQRIALRGDTIDELGGDDVDAGEAAVIEIVEVVQTARCAGPSI
Ga0134123_1289927723300010403Terrestrial SoilMRDVDDGRLEAQRIALRGDAVDELGGDDVDAGEAAVIEIVEVVQTARCAGASIA*
Ga0105246_1172773223300011119Miscanthus RhizosphereMRDEDDGGLEAQRITLRRDTIDELGGDDVDAGKAAVIEIVEVVQTARCAGPSIR*
Ga0137392_1143566333300011269Vadose Zone SoilGAVLDRVGDVDDGGLEAQGVALGGDAVREARGYDVDAGEAAGVEVIEVVQTARCAGASIA
Ga0137399_1172112723300012203Vadose Zone SoilMGDVDHGRVEAQRFALRLDAVDEAGGDDVDAGQAAAVEVMKVVQTARCAGASIA*
Ga0150985_11366280523300012212Avena Fatua RhizosphereMRDVDDGGLEAQRVALRCDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA*
Ga0137384_1109505223300012357Vadose Zone SoilVRDVDDGGLEAQRIALRGDALGELGRDDIDAGEAAAIEIVEVVQTARCAGPSIA*
Ga0157348_101011323300012479Unplanted SoilVRDVDDGRLEAQRIALRGDAVDELGGDDVDAGKAAVIEIVEVVQTARCAGPSIR*
Ga0157293_1007860933300012898SoilMRHVGDGGLEAQRVALRGDAVDELGGDDVDARQAAIIEIVEVVQTARCAGASIA*
Ga0157292_1043668023300012900SoilMRDVDHGRVEAQRFALRGDAVDELGGDDVDARQAAIIEIVEVVQTARCAGASIA*
Ga0157283_1010208723300012907SoilMRDVDDGRLEAQRIALRGDAVDELGGDDVDARQAAIIEIVEVVQTARCAGASIA*
Ga0157290_1031340913300012909SoilVGDVDDGGLEAQRVALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA*
Ga0164241_1003691223300012943SoilMRDEDDRRLEAERIALCGDAVDELGGDDVDAGEAAIIEIVEVVQTARCAGPSIR*
Ga0164241_1122269123300012943SoilMRDVDDGGFEAQRVALRGDAVDELGGDDVDARKAATIEIVEVVQTARCAGASIA*
Ga0164298_1037159423300012955SoilMRDEDDGGLEAERIALCGDTIDELGGDDVDAGEAAVIEIVEVVQTARCAGPSIR*
Ga0164302_1106723023300012961SoilVLVRERPQFLVRAVLDRMRDEDDRRFEAERIALCGDTVDELGGDDVDAGEAAVIEIVEVVQTARCAGPSIR*
Ga0126369_1231316613300012971Tropical Forest SoilDGGLEAQRARLRLDAVDEAGGDDVDARDAAAVEVMKVVQTARCAGASIA*
Ga0164307_1099582013300012987SoilLDRMRDEDDGGLEAERIALCGDTIDELGGDDVDAGQAAVIEIVEVVQTARCTGASIR*
Ga0157373_1033435823300013100Corn RhizosphereMRDEDDRGLEAQRIALRGDTIDELGGDDVDAGEAAVIEIVEVVQTARCAGPSIR*
Ga0157374_1135448133300013296Miscanthus RhizosphereLDRVRDVDDGWLEAQRVALRGHALGELGGDDVDAGKAAAIEIVEVVQTARCAGPSIA*
Ga0134075_1055065213300014154Grasslands SoilVGDVDDGRLEAQRLALRGDALGEFGGDDVDARQAAAIEIVEVVQTARCAGASIAQGNHCELRLRGHL
Ga0134079_1026836133300014166Grasslands SoilMGNVDDRRVEAQRFALRLDAVDEARGDDVDAGQAAAVEIMKVVQTARCAGASIA*
Ga0182008_1029051613300014497RhizosphereQRITLRRDTIDELGGDDVDAGKAAVIEIVEVVQTARCAGPSIR*
Ga0157377_1084065313300014745Miscanthus RhizosphereMRDVDDGRLEAQRIALRGDAVDELGGDDVDPGQAAAIEIVEVVQTARCAGASIR*
Ga0157376_1060434823300014969Miscanthus RhizosphereMRDVDDGGLEAQRVALRGDAVDELGGDDVDAGEAAVIEIVEVVQTARCAGPSIR*
Ga0132256_10065139233300015372Arabidopsis RhizosphereDHAGLKAQRIALRFDAFGELGRDDVDARQAAVIEIVEVVQTARCAGPSIR*
Ga0132255_10087550513300015374Arabidopsis RhizosphereRVRDIDHGGVEAQRVALRGDAVDELGGDDVDARQAAVIEIVEVVQTARCAGPSIR*
Ga0182038_1080868413300016445SoilDTGLEAQRIALRFDTFGELGRDDVDARQAAAIEIVEVVQTARCAGPSIR
Ga0187776_1099691033300017966Tropical PeatlandAVLDRVRDVDDGGLEAQRIALRLDALGELGGDDVDARQAAAIEIVEVVQTARCAGPSIR
Ga0173479_1045629213300019362SoilMRDVDDGRVEAQRFALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA
Ga0193713_116680813300019882SoilGLEAQRIALRGDALGELGGDDVDARQAAIIEIVEVVQTARCAGASIA
Ga0193752_109848933300020027SoilVLDRMGDVDDGGLEAQRVALCSDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA
Ga0206356_1070316723300020070Corn, Switchgrass And Miscanthus RhizosphereMRDEDDGGLEAQRIALRGDTIDELGGDDVDAGEAAVIEIVEVVQTARCAGPSIR
Ga0206352_1076228113300020078Corn, Switchgrass And Miscanthus RhizosphereLGGGAVLDRMRDEDDGGLEAQRIALRGDTIDELGGDDVDAGKAAVIEIVEVVQTARCAGPSIR
Ga0213878_1052122823300021444Bulk SoilMRDVDDGRLEAQRVALRGDAVDELGGDDVDARDAAAVEIVEVVQTARCAGASIA
Ga0213847_111998833300021938WatershedsGLGAVLDGMRDVDDGGLEAQRIALRGDALGELGRDDIDAGETAAIEIVEVVQTARCAGPSIA
Ga0224712_1069643413300022467Corn, Switchgrass And Miscanthus RhizosphereMRDEDDRGLEAQRITLRRDTIDELGGDDVDAGEAAVIEIVEVVQTARCAGPSIR
Ga0247761_108912913300022878Plant LitterVRDIDDGGLEAQRVALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA
Ga0247666_111818323300024323SoilMRDVDDGRIEAQRIALRGDAVDELGGDDVDAGKAAAIEVVEVVQTARCAGPSIR
Ga0207426_104786623300025302Arabidopsis RhizosphereMRDVDDGGLEAQRVALRGDAVDELGRDDVDAGKAAIIEIVEVVQTARCAGASIA
Ga0207656_1059462813300025321Corn RhizosphereEAQRIALRGDTIYELGGDDVDAGEAAVIEIVEVVQTARCAGASIA
Ga0207688_1004242233300025901Corn, Switchgrass And Miscanthus RhizosphereVRDVDDGGLEAQRVALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA
Ga0207647_1034295913300025904Corn RhizosphereMRDEDDRGLEAQRITLRRDTIDELGGDDVDAGKAAVIEIVEVVQTARCAGPSIR
Ga0207707_1091736713300025912Corn RhizosphereMRDEDDRRFEAERIALCGDTVDELGGDDVDAGEAAVIEIVEVVQTARCAGPSIR
Ga0207695_1167266823300025913Corn RhizosphereMRDEDDGGLEAQRIALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA
Ga0207662_1006443833300025918Switchgrass RhizosphereMRDVDDGRLEAQRIALRGDAVDELGGDDIDARQAAVIEIVEVVQTARCAGASIA
Ga0207661_1124749333300025944Corn RhizosphereRMRDEDDRGLEAQRITLRRDTIDELGGDDVDAGKAAVIEIVEVVQTARCAGPSIR
Ga0207667_1012631553300025949Corn RhizosphereLDLGRGAVLDRMRDEDDGGLEAQRIALRGDAVDELGGDDVDAREAAVIEIVEVVQTARCAGPSIR
Ga0207712_1025893423300025961Switchgrass RhizosphereMRDVDDGRLEAQRIALRGDAVDELGGDDVDPGEAAAIEIVEVVQTARCAGPSIR
Ga0207703_1084818123300026035Switchgrass RhizosphereMRDVDDGRLEAQRIALRGDAVDELGGDDVDPGQAAAIEIVEVVQTARCAGPSIR
Ga0207639_1165079123300026041Corn RhizosphereMRDVDDSGLEAERVALRGDAVDELGCDDVDAGEAAVIEIVEVVQTARCAGASIR
Ga0207676_1255116813300026095Switchgrass RhizosphereDRVRDVDDGGLEAQRIALRGDALGELGGDDVDARQAAIIEIVEVVQTARCAGASIR
Ga0209055_114637133300026309SoilAQRITLRFDAFGELRRDDVDARKAAAIEIVEVVQTARCAGPSIR
Ga0209074_1003458713300027787Agricultural SoilEDDGGLEAQRIALRGDTIDELGGDDVDAGEAAVIEIVEVVQTARCAGPSIR
Ga0209515_1025671323300027835GroundwaterVRDVGDGRFETQRITLRGDAVDEAGGDDIDTGNAAAVEVIEVVQTARCAGASIA
Ga0268264_1187951213300028381Switchgrass RhizosphereFLGAVLDRVRDVDDGGLEAQRVALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA
Ga0170834_11360246133300031057Forest SoilGVRDVDHGRLETQRITLRSDALGELGRDDIDAGEAAAIEIVEVVQTARCAGPSIR
(restricted) Ga0255310_1016354423300031197Sandy SoilMGDVDDRGVEAQRFALRRDAVDEARGDDVDAGKAASVEIMKVVQTARCAGASIA
Ga0307495_1014801123300031199SoilMGDVDDGGLEAQRVALRGNAVDELRGDDVDARQAAIIEIVKVVQTARCAGASIA
Ga0307497_1019071313300031226SoilDVDDGGLEAQRVALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA
Ga0265325_1030719833300031241RhizosphereLETQRLALRGDAVDELGGDDVDARQAAIIEIVEVVQTARCTGPSIR
Ga0318516_1016673523300031543SoilMRDIDDTGLEAQRIALRFDTFGELGRDDVDARQAAAIEIVEVVQTARCAGPSIR
Ga0318561_1050547723300031679SoilMRDIDDTGLEAQRIALRFDTFGELGRDDVDARQAAAIEIVEVVQTARCAGPSIA
Ga0310813_1092082613300031716SoilDDGGVEAQRIALRGDAVDELGGDDVDAGEAAAIEIVEVVQTARCAGASIR
Ga0310813_1213014013300031716SoilDRMRDVDDGGLEAQRIALRGDAVDELGGDDVDARQAAVIEIVEVVQTARCAGASIA
Ga0318494_1021530333300031751SoilLDLGGGAVLDRVRDVDDGRLEAQRIALRGDAVDELGGDDVDARQAAVIEVVEVVQTARCAGPSIR
Ga0318526_1043238923300031769SoilLGLGAVLDRMRNVDDAGLEAQRIALRFDTFGELGRDDVDARQAAAIEIVEVVQTARCAGPSIR
Ga0318517_1037861533300031835SoilVLDRMRDIDDTGLEAQRIALRFDTFGELGRDDVDARQAAAIEIVEVVQTARCAGPSIR
Ga0302322_10097309233300031902FenMRDIDDGRLEAQRVALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA
Ga0308175_10048798533300031938SoilMRNVDDGRLEAQRVALRGDAVDELGGNDVDAGKAAVIEIVEVVQTARCAGPSIA
Ga0308174_1040465933300031939SoilGMRDVDDGGLEAQRVALRGDAVDELGGDDVDAGEAAVIEIVEVVQTARCAGPSIR
Ga0310910_1024047413300031946SoilDGFDLGLGAVLDRMRDIDDTGLEAQRIALRFDTFGELGRDDVDARQAAAIEIVEVVQTARCAGPSIR
Ga0310902_1117480213300032012SoilRLEAQRIALRGDAVDELGGDDIDARQAAVIEIVEVVQTARCAGPSIA
Ga0315910_1004624733300032144SoilVRDVDDGGFEAQRIALRRDAVDELGGDDVDTGEAAAIEIVEVVQTARCAGPSIR
Ga0335075_1082637223300032896SoilVGDVDDGRLEAQRIALSGDAVDELGGDDVDAGEAAIIEIVEVVQTARCAGASIR
Ga0310810_1112162433300033412SoilDGGLEAQRIALRGDAVDELGGDDVDARQAAVIEIVEVVQTARCAGASIA
Ga0310810_1118884923300033412SoilMRDVDDGRLEAQRIALRGDAVDELGGDDIDAGEAAAIEIVEVVQTARCAGASIR
Ga0314786_167145_15_1793300034664SoilMRDVDDGRLEAQRIALRGDAVDELGGDDIDARQAAVIEIVEVVQTARCAGPSIA
Ga0373950_0025776_523_6873300034818Rhizosphere SoilMRDVDDGRLEAQRIALRGDAVDELGGDDVDARQAAIIEIVKVVQTARCAGASIA


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