3300008133: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763840445 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008133
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052982 | Ga0111365
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763840445 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 154875861
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F051212	Metagenome	144	N
F064818	Metagenome	128	N
F071327	Metagenome	122	N
F072446	Metagenome	121	N
F073671	Metagenome	120	N
F080164	Metagenome	115	N
F081454	Metagenome	114	N
F081510	Metagenome	114	N
F084342	Metagenome	112	N
F084362	Metagenome	112	N
F094006	Metagenome	106	Y
F094007	Metagenome	106	N
F097527	Metagenome	104	N
F098763	Metagenome	103	N
F103431	Metagenome	101	N
F103432	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111365_100238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	48058
Ga0111365_100621	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	26836
Ga0111365_100726	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	24393
Ga0111365_100837	All Organisms → cellular organisms → Bacteria	22278
Ga0111365_101014	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	19311
Ga0111365_102131	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	11546
Ga0111365_102989	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	8747
Ga0111365_106815	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4189
Ga0111365_107447	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3845
Ga0111365_108319	Not Available	3433
Ga0111365_111917	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2340
Ga0111365_114881	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1852
Ga0111365_114902	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1849
Ga0111365_117151	All Organisms → Viruses → Predicted Viral	1593
Ga0111365_118232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1493
Ga0111365_118675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1456
Ga0111365_126936	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	974
Ga0111365_129196	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	892
Ga0111365_133701	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	760
Ga0111365_145708	Not Available	516
Ga0111365_146510	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111365_100238	Ga0111365_10023855	F073671	MNKEQAEHELAELHAQERSLEKALELVREKIRELVNYTDKNKEQK*
Ga0111365_100621	Ga0111365_10062129	F081510	MKFNVNAIKSTAKTTWVTTKILGKKYAPYILLGAGLVGYGYSVYEGIKSGKKLEATKAKYEQMDAQGDQYSRMEVVADIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDTPLETKTVEVDGEEIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYLEWDAHEVWNDDKQETEIQFYVRWKLPRNLYATTNFHDFIPKKTRKELN*
Ga0111365_100726	Ga0111365_1007267	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLQVEMVGKTLFRRHPLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTHDLGNYSYPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDDWLLKTKAEPSLYVPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY*
Ga0111365_100726	Ga0111365_1007268	F080164	MVGLTLCAAPQVTLRERASAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRITLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLLYKGQEGRLVLCEYYESHRGDLFLDVTNAHPEIFGELRPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS*
Ga0111365_100837	Ga0111365_10083711	F094007	MKSKTVEVLELARPNRAGIIDVVDSDGNVVPLDYSGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAEYHRGRGNYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKTGKKRSGWNKGCIDNNA*
Ga0111365_101014	Ga0111365_10101420	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKNNQILTLKMLIIALVAALLFEYAYPWRIIFG*
Ga0111365_102131	Ga0111365_1021313	F043990	MIKKLGIIFTFGVIILGIVVYVNHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDKLDSSFTKLNKLPIKEDLPPNGIPKQFLNIANGYYKYVVDENNDRNFDILIVDTTRKEICIYYQIL*
Ga0111365_102989	Ga0111365_10298910	F033081	MHTDITVVYRPKKGVMAWLFRRALPQDTRPTFVWSRIVTEIENAGYFSRLKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPAGWAKVTAWVVGTTGVFLIGSFTSSYTPSQRLLYSLEATGCGVYDTLLLLALIEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIAISLIAVVLAIDIAKLL*
Ga0111365_106815	Ga0111365_1068153	F081454	MKTFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0111365_107447	Ga0111365_1074472	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEEHGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK*
Ga0111365_108319	Ga0111365_1083193	F072446	MHEFNAQAKNKFNSPTHPQMKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFNGDTLAQIAWNFPYIVEEHYHSISGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKEFETLARQLHALTLPTVGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYKSRRKYDSGRIVTLECEDTESLTARYVVQLGQIRKAELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVPEKEIGR*
Ga0111365_111917	Ga0111365_1119174	F051212	MKKFFFIFVLYWLHSCNGTEKVNADTIKTSISEKQNAEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLKDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQNNTTWDYITKQVMDIKYSQLYNHLNLEK*
Ga0111365_114881	Ga0111365_1148811	F094006	MWSALEPAGPTGALYESAVCVEAHIGELQTGGIACRGLFAFGGSNILAVAELGAEAPHAINMYDIALCKPLSELFAKELEYAFNFGA*
Ga0111365_114902	Ga0111365_1149021	F041827	FFMKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLFEYISNVRFQYKNGNEINRMTINEASIDFEYDTYGRIVKERRFDHKSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRPLTYELPFYNDIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYNKKKTYDNDYLEREKITVYEKSHNDPTHDNYLFSVSPSRYYIKEK*
Ga0111365_114902	Ga0111365_1149022	F041827	MKHFLSALALGCLLLSCNRDLENNETPAPQNEKLVLLDELREGSTITFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDSQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGD
Ga0111365_117151	Ga0111365_1171512	F084362	MSLMNCAFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVWSVDIAVKINNKPAGSLEDGDKPSETEAEQKGFWWEK*
Ga0111365_118232	Ga0111365_1182321	F103431	FIQLFLQGIAWRVAIAHFFHAERGNAAAATFDGAFRENIADCHAEDDNDKNAESKEEGFHVCIPEG*
Ga0111365_118675	Ga0111365_1186753	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFNTIPAAGVEPARPCG
Ga0111365_126936	Ga0111365_1269361	F084342	VSGQCGAKLFLLGGYLAIPIRCPFFAQALKKTLGQARSLGDAYDKDYQNEKALQWIHRRRILGICKEE*
Ga0111365_129196	Ga0111365_1291961	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSEQAFDGQDKVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIPKEFGKKGVYE*
Ga0111365_133701	Ga0111365_1337011	F064818	KFIVVLLPYFTYMNKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLTIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0111365_145708	Ga0111365_1457082	F073671	KEQTEHELAELHEKEQSLEKALEIVREKIRELINYTNKNKAAR*
Ga0111365_146510	Ga0111365_1465102	F098763	MDRRTSLRILSTVLYLATKLFEAVVWTTISYDPSDEVEGKGGMNAIPTAGGGEALG