3300008128: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159713063 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008128
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053180 | Ga0114847
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159713063 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96914932
• Sequencing Scaffolds: 19
• Novel Protein Genes: 22
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F042387	Metagenome	158	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F051213	Metagenome	144	N
F054109	Metagenome	140	N
F055792	Metagenome	138	N
F068942	Metagenome	124	N
F073671	Metagenome	120	N
F078842	Metagenome	116	N
F084342	Metagenome	112	N
F094006	Metagenome	106	Y
F097527	Metagenome	104	N
F098763	Metagenome	103	N
F099454	Metagenome	103	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114847_100001	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	578624
Ga0114847_100016	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	114881
Ga0114847_100026	All Organisms → cellular organisms → Bacteria → Terrabacteria group	91993
Ga0114847_100195	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	33303
Ga0114847_100661	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	16980
Ga0114847_100697	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	16286
Ga0114847_101274	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	10346
Ga0114847_101301	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	10203
Ga0114847_101931	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7571
Ga0114847_103304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	4890
Ga0114847_103671	All Organisms → cellular organisms → Bacteria	4426
Ga0114847_105323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3091
Ga0114847_105454	All Organisms → Viruses → Predicted Viral	3024
Ga0114847_108937	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1861
Ga0114847_114071	Not Available	1205
Ga0114847_114492	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1170
Ga0114847_123686	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	746
Ga0114847_124976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	711
Ga0114847_134839	Not Available	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114847_100001	Ga0114847_100001588	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLNRLQGNELFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKIVIPEDAILRAAGECGIEMNRNIVEVDRSELSKKLREVQLSPWCKQIDMAYRKAHDESSVNTLFRASYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIAMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDIYETNS*
Ga0114847_100016	Ga0114847_10001645	F033081	MCPPDIAVVHRPQKGAMAWLFKKGMPQDPKPVFVWPRLVTAIKDVGYFSRRELSVLAVGLIIVTIVTIKTLLLVPELNQSVVGLLTHGLEAFLPAGWATGAAWVVGMAGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRSGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0114847_100026	Ga0114847_10002660	F054109	MVGRPKSKKGTKVHTAFKIYPSDKERAQNMADKLGMSLSAYINKAVLEKVERDEKSEN*
Ga0114847_100195	Ga0114847_10019513	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKAIEAVALPHVARLDEGIPLQRIGGLGDLLVAPDVSQTDDL*
Ga0114847_100195	Ga0114847_10019514	F040149	VADEGAEELRGEVLIEEQGIPVLFVEVVAWYDGRVSSSEVLSFVGIALEREPRLAPVWSHDSEDAIHDFIYDISVPKGHTLTAVRERETVVAQLLNIHRIF*
Ga0114847_100661	Ga0114847_1006615	F045567	MRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVKDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKERPSLSSERGCVVERVVR*
Ga0114847_100697	Ga0114847_10069714	F047508	MLGHRLVEGRVKYPYLRRIGEYLRHSFDAEDVGRVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYATRVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0114847_101274	Ga0114847_1012742	F098763	MDRRASLRVLSTALYLATKLFEAVIWATIADDSSDEVEGKGRMNTIPTAVDE*
Ga0114847_101301	Ga0114847_1013012	F094006	MWGTLEPAGSTGALYEPAVCVEAHIGELQAGSIARRGFFAFGGSNVLAVAELGAKAPHAINMYDIAVCEPLSELFAEELEYAFNFGA*
Ga0114847_101931	Ga0114847_1019315	F098763	MDRRTSLRVLSTALYLATKLFEAVVWATIADNPSDEVEGKGGMNAIPTAVDE*
Ga0114847_103304	Ga0114847_1033043	F103436	MITTSKYGWCDDKSDAEILNSLKDWVSSCDVDFKREALKKIDSAFALWGGRQYVAAVDLLDENEVFLKKSDWPYYALGIEILKARKYEFFNE*
Ga0114847_103671	Ga0114847_1036713	F055792	VEIASEALDSTSAVAHRILLLTTQLGESLLTSLRTEDGVIAETMVTGALERDLAIDCALEEVRPVFVDESDDGTEAGTTWGRYPLEAFQKEGYILFEGSMLPCEACGVDSRSSVKSLDLESRIIGKAIEAVALPDMTCLDESIPLQGIGGLRDLLVTPDVSQTDHLQTSRKEGTDLLQLMDIIARKYQLFHTFVS*
Ga0114847_103671	Ga0114847_1036714	F040149	VADEGAEELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRAVGVALEREPWLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNVHRYVYYP*
Ga0114847_105323	Ga0114847_1053235	F097527	MIYFKMEKIGNSRYNKEKKTRSENLVFNTIPAAGVEPARPCGHW
Ga0114847_105454	Ga0114847_1054544	F051213	MKASKLLWAVVVALTFVLTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0114847_108937	Ga0114847_1089373	F084342	VSGQCGAKLFLLGGYLAIPIRRPFFAQALKETLGQERGLRDAYDKDYQNEKALQWVHRRHILGICKEE*
Ga0114847_114071	Ga0114847_1140713	F073671	MNKETEHELAELHEKERSLEKALELVREKIRELVNYTDKNKV*
Ga0114847_114492	Ga0114847_1144922	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYSNRKLSSVIDEAVISDSGIQYKKVVIREYRYNGSEVLVNENIKYHSESYAYNLKDENFTHTYVLNGENITKIHHQISKNVSGGHFYLNPNNMVVIDEEVIYDAKNSPYKNIKGFSALAAEFCSLDEKENTVADYLNFRWASHNPTLIKKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTV
Ga0114847_123686	Ga0114847_1236861	F099454	KPKTHSGIKTLMKASKLLWAVIMAFTFVFTSCDPFSQNEPTLEDRGYKYFDSTAQRKSFRVVTASGKSYNHKVDWHIIGILDQNSGTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGQDRSVFFETKNDYKRTTSPSMKVIQQAK*
Ga0114847_124976	Ga0114847_1249762	F103436	MMATSKYGCCDKSDAEILENLKDWVSKCDVSSKREALKKIDSAFALWGARQYVAAVHLLDENEVFLEKSDWPYYALGIEILKARKHEFFNE*
Ga0114847_126760	Ga0114847_1267601	F068942	SVTEVHWSNVKNPEYGNAINITLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFPKVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFKFSVSVTPPGLYIFKVRQPALPAKAQ*
Ga0114847_134839	Ga0114847_1348391	F054109	MSGRPKSKKGVKVHTAFKIYPDDKARVQAMADKLDVSLSSYINKAVLEKVKRDEKSEN*